mRNA_D-mesarthrocarpus_Contig9770.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9770.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9770.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: D7G793_ECTSI (Mannitol 1-phosphate dehydrogenase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G793_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.280e-27
Identity = 60/103 (58.25%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   16 FNVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAITSKGCGAEVDITVNGSPVVEDVVVISEECDIMDFVGRGVDKIMAVVGDRPTLLQFIHLVSARKC 324
            F+VHFGAGRLGLGLV GAI     PF  VQRPK +W  I S GCG++++ITVNG PVVEDV VISE CD+ +++  GV   M VVGDRPTL Q +   ++  C
Sbjct:   76 FHVHFGAGRLGLGLVVGAIAESKTPFGIVQRPKASWGGIISNGCGSQIEITVNGKPVVEDVTVISEGCDVEEYLKVGVAA-MVVVGDRPTLTQLVKKATSFSC 177
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A7S4DE76_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE76_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 3.260e-15
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:   16 FNVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAITSKGCGAEVDITVNGSPVVEDVVVISEECDIMDFVGRGVDKIMAVVGDRPTLLQ 294
            F+ HFGAGRLGLGLVA AI   G P+  VQRPKTTWKAI+  G G+ + ITVNG PVV+++ V   + +  D++G    + +A++G    +L+
Sbjct:   89 FHTHFGAGRLGLGLVAPAIERSGVPYCVVQRPKTTWKAISKTGSGSALAITVNGEPVVKEMKVALGDLEAADYIGA---QSLALLGSNLEVLK 178
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A7S2C0G2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0G2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.400e-9
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   16 FNVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAITSKGCGAEVDITVNG 177
            F+VHFGAGRLGLGLV  AI   G PF  +QR K TW A+ S+  G  +D+ +NG
Sbjct:   69 FHVHFGAGRLGLGLVVPAIAASGVPFTVLQRKKVTWTAV-SESTGGYMDVIING 121
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A7S3WAX3_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WAX3_EMIHU)

HSP 1 Score: 67.0 bits (162), Expect = 1.530e-8
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:   16 FNVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAI---TSKGCGAE-VDITVNGSPVVEDVVVISEECDIMDFV-------GRGVDKIMAVVGDRPTL 288
            ++VHFGAGRLG+GLV  AI   G PFA VQRPK  W+ +    SKG GA+ VDI VNG  V   +  I+      DF+       G   ++++ +V    +L
Sbjct:  207 YHVHFGAGRLGMGLVVPAISASGIPFAVVQRPKRKWQELFHRASKGTGADQVDIKVNGEVVAHRLEAIAASDGTPDFLPPQALVFGDSTEELLPIVQSATSL 308
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A8J2S2V5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S2V5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.140e-7
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   16 FNVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAITSKGCGAEVDITVNG 177
            F+VHFGAGRLGLGLV  AI   G PFA VQRPK  W+ + +     E+D++VNG
Sbjct:  165 FHVHFGAGRLGLGLVVPAIAASGVPFAVVQRPKPRWEQLFANS--EEIDVSVNG 216
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A7S0FDE5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FDE5_9DINO)

HSP 1 Score: 63.2 bits (152), Expect = 2.090e-7
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   19 NVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTW-KAITSKGCGAEVDITVNGSPVVEDVVVISEECDIMDFVGRGVDKIMAVVGDRPTLLQ 294
            ++H GAGRLGLGL   A+VGGG+PFA VQRP   W +A T+    A  +I VNG P+V  + V+    ++   +  G +K M V+ +   +LQ
Sbjct:  236 HLHVGAGRLGLGLALPALVGGGRPFAVVQRPSAAWARAATA----ARTEIRVNGQPLVS-LRVVKTRSEVAAAMAAG-EKAMLVLTEDAEVLQ 322
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A7S0EFU2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EFU2_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 3.220e-7
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   19 NVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAITSKGCGAE-VDITVNGSPVVEDVVVIS 210
            ++HFGAGRLGLGLV  AI   G PFA VQRPK  W+A+   G   + + ++VN   VV++V V++
Sbjct:  160 HLHFGAGRLGLGLVVPAISASGVPFAVVQRPKARWQALFKDGSRPDQLRVSVNSKVVVQNVDVVA 224
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A7S4DUK4_9EUKA (Hypothetical protein n=3 Tax=Lotharella TaxID=74819 RepID=A0A7S4DUK4_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 3.240e-7
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   19 NVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAITSKGCGAEVDITVNGSPVVEDVVVIS-EECDIMD 231
            ++HFGAG+LGLGLV  AI   G+P+A VQRP  +WK++   G   +V I VNG  V + + ++  ++ D +D
Sbjct:   36 HLHFGAGKLGLGLVLEAIAQSGRPYAVVQRPSASWKSLMDPGGPKQVTIRVNGKAVGKPMTILQGKDIDTLD 107
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A7S2B3S2_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3S2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.060e-7
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   16 FNVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAITSKGCGAEVDITVN 174
            F++HFGAGRLGLGLV  AI   G PFA +QRPK  W  I S+G G  VDI VN
Sbjct:  167 FHIHFGAGRLGLGLVVPAIYASGIPFAVLQRPKPKWAEIFSEGPGY-VDIKVN 218
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Match: A0A7S3SQ70_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SQ70_9SPIT)

HSP 1 Score: 60.8 bits (146), Expect = 1.530e-6
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   16 FNVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWK---AITSKGCGA-EVDITVNGSPVVEDVVVIS 210
            F++HFGAGRLG+GLV  AI   G PFA VQRPK  W+   A+ S+G    ++DI VN    V  V V+S
Sbjct:  181 FHLHFGAGRLGMGLVVPAISASGIPFAVVQRPKRKWQEMFAVASRGTNENQMDIKVNDVVAVHSVNVLS 249
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9770.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G793_ECTSI1.280e-2758.25Mannitol 1-phosphate dehydrogenase, partial n=1 Ta... [more]
A0A7S4DE76_HETAK3.260e-1548.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2C0G2_9STRA8.400e-955.56Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3WAX3_EMIHU1.530e-841.18Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A8J2S2V5_9STRA1.140e-757.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0FDE5_9DINO2.090e-741.94Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S0EFU2_9EUKA3.220e-749.23Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S4DUK4_9EUKA3.240e-743.06Hypothetical protein n=3 Tax=Lotharella TaxID=7481... [more]
A0A7S2B3S2_9STRA4.060e-762.26Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3SQ70_9SPIT1.530e-650.72Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9770contigD-mesarthrocarpus_Contig9770:2195..4543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G793
Model size1000
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.08e-30
EggNOG OGs2BX5V@1|root,2S2EN@2759|Eukaryota
Cds size603
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791129.0753813-UTR-D-mesarthrocarpus_Contig9770:2194..25911680791129.0753813-UTR-D-mesarthrocarpus_Contig9770:2194..2591Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9770 2195..2591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791129.0887523-CDS-D-mesarthrocarpus_Contig9770:2591..30531680791129.0887523-CDS-D-mesarthrocarpus_Contig9770:2591..3053Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9770 2592..3053 -
1680791129.101356-CDS-D-mesarthrocarpus_Contig9770:4402..45431680791129.101356-CDS-D-mesarthrocarpus_Contig9770:4402..4543Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9770 4403..4543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9770.3.1prot_D-mesarthrocarpus_Contig9770.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9770 2592..4543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9770.3.1

>prot_D-mesarthrocarpus_Contig9770.3.1 ID=prot_D-mesarthrocarpus_Contig9770.3.1|Name=mRNA_D-mesarthrocarpus_Contig9770.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=201bp
GGNHPFNVHFGAGRLGLGLVAGAIVGGGQPFAFVQRPKTTWKAITSKGCG
AEVDITVNGSPVVEDVVVISEECDIMDFVGRGVDKIMAVVGDRPTLLQFI
HLVSARKCRRRPLRVQRYSPTPFFCGAPHPHTRACVLHTPSRQRFASLFA
PSFLPVLVFHFTVILLTCSLVGRSTQISLTLYSCWPSIHSCIHQSIYSPC
*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9770:2195..4543-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9770.3.1 ID=mRNA_D-mesarthrocarpus_Contig9770.3.1|Name=mRNA_D-mesarthrocarpus_Contig9770.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2349bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9770:2195..4543- (Discosporangium mesarthrocarpum MT17_79)
GGAGGGAATCACCCCTTTAATGTGCACTTTGGAGCGGGGAGGCTTGGCCT
GGGGCTTGTGGCAGGGGCGATTGTTGGCGGCGGACAGCCATTTGCCTTCG
TTCAGCGCCCTAAGACCACATGGAAGGCCATCACCTCCAAGGTGCGGTGG
GGTGGGGAAGGAAGCGATGATCGGACTGACCTCCACGACAAGGCAGGGGT
CCGGGGCTGGGCTTGGAGTGTGTCGGTGTGTGGTGCTTAGCGCGGGCGTA
GTGCGTCGGGTGTTCTCTGGGACCCCGACCCGGTGAGAGAGAGGCTCGTG
CGCTCTTAGTTTTCACCGTTTTTTTTTTTTTTCCTGCTTCGCCGCCTCCC
CTGCCCTTGCTTCAGACGACTGCCTCTTGCTTCGGTCCAATTGCGTCTGA
TTTTATGATGCGCTGTCTCCTCAAGGCCATATCGGAGGCCATATTCAAAG
GCCGTATGGGGGGGCCCTGATAAGCCACCACGCAACGGCCTTGCTCGGTG
GCTTGACAGTTGTGTTGGCGAATCCATCGGGATCAGCATGAGCGTGTTGG
TCATGGCATCCAATTTGCCTCGTTTTTTCTTTTCATCTGCAGGCGCTCAA
TGGAACAAGCACTACCGTAAGCATAGTCTGAAGGCCGTTAAACTGTAGCA
CCAGGCAGAAAGGTAGGGGAGCCTTTGTTTTTCCCTTATTCCTCAATCTT
CTCACGCCAGATGCATGCTGCATAGAACGCCTCAAATGCCAAATCCCAGG
AGGCCCTGCTTCTTGAGCCTGAGATGGAGGAGCGCCCTCTTTTACCTTTT
ATTTTGTCTGCATGGTTCAATGGCGACCAGTGTAGAATCAATGAGAGTCT
CCCCCCATAGCTAATCCTAACCGTAACCCCATCAAGCTCTACCGTAAGCA
TAGTCTGAAGGCCGTTAAACTGTAGCACCAGGCAGAAAGATAGGGGAGCC
TTTGTTTTTAACTTATTCCTCCATCGTCTAACGCCAGATGCATGCTGCAT
ATCCTTACAGTGGTGCTGCATAGTTCTTCTGGGGGCACTTTGTACTGACC
CTAACCCTAACCCTAACCCCAGTGCATAAGTCCCTAGCCATGTGAACACA
CCCATCCCCTTTTCTCAACGTAACCCTGACTCCCATAACCCTTTTCCTGC
ACACCATACATTATAGTAGCATGCCGGACAGAACCCTCTGTAGGGTCATA
ATCCCCAGCACTTAACGCCTGAGGGCCGTAATCTCTGTCGACTCTTTGCA
TTGAAGCTGGAAAAGCTCCACTGCACATCTTCAGAGGTACGGCAGTGACT
TGTGAGTAGAAGTGGATGGAACCCCCTGAAGATAGGAACTATATGCACGC
CCTGGCCCTTTACCGTTGTGCTGACTCCCTCCCTGTGAGCGGGGGCCTCT
GGCACTCGGGTTCTTGCTTAATGTTCCTGATGGTGTCGCTTGGCCTCACC
GTTCTTGCCGTTTCTCCCCTCTCTCTCTCTCTTTTGGCAGGGGTGTGGGG
CAGAGGTCGACATCACAGTGAACGGGAGTCCCGTGGTGGAAGATGTGGTG
GTCATCAGCGAAGAGTGTGACATCATGGACTTTGTGGGCAGAGGGGTGGA
TAAGATCATGGCCGTGGTTGGGGACCGGCCCACCCTCTTGCAATTCATCC
ACCTTGTGAGTGCGCGGAAGTGTCGCCGTCGGCCTCTCCGGGTCCAGAGG
TATTCGCCGACACCATTTTTTTGCGGGGCTCCTCACCCACACACAAGAGC
GTGCGTGCTGCACACCCCCAGCCGCCAGCGTTTCGCTTCGCTCTTTGCTC
CCTCGTTCCTACCCGTGCTAGTGTTTCATTTCACTGTAATTCTCCTTACT
TGTTCCTTAGTGGGCCGCTCTACGCAAATCAGTCTCACCCTTTATTCGTG
TTGGCCATCGATCCACTCATGCATCCATCAATCCATCTATTCTCCCTGTT
AAGCTGTGCTTGAAGTCGGCTGTTATTAGGGTTAGGGTATGGTGCACAGC
AAGTACATCGGTAAGCACCACGTTACACCGGTGTTTTCACTACTTTTTTT
TTATGCTTACCGAAAATTTTTGATCTGACTGATTTTTTTTTTTTTTTAAA
CCTGAAATGCCCAACTTTGGGTCAGACCTGATGTGCAGCAAGCACGGTGT
GAAGAATTGATCAGGTCGTTGCGCTGCGGGTCACTTAAATCCTCTCACAT
TTCATCTTTAATCACCTCAAAACCCTCTGGGAAAAGGACAAGAGCAATAA
GAAACAAGAGGTTTGAGACAAGAAAAAGGGAAACTCAGAAAGCAACGCAA
AAACCACCATGCTCGAATCGGTTCCACAAGCAGCATGGAATGCTTATCC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9770:2195..4543-

>mRNA_D-mesarthrocarpus_Contig9770.3.1 ID=mRNA_D-mesarthrocarpus_Contig9770.3.1|Name=mRNA_D-mesarthrocarpus_Contig9770.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=603bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9770:2195..4543- (Discosporangium mesarthrocarpum MT17_79)
GGAGGGAATCACCCCTTTAATGTGCACTTTGGAGCGGGGAGGCTTGGCCT
GGGGCTTGTGGCAGGGGCGATTGTTGGCGGCGGACAGCCATTTGCCTTCG
TTCAGCGCCCTAAGACCACATGGAAGGCCATCACCTCCAAGGGGTGTGGG
GCAGAGGTCGACATCACAGTGAACGGGAGTCCCGTGGTGGAAGATGTGGT
GGTCATCAGCGAAGAGTGTGACATCATGGACTTTGTGGGCAGAGGGGTGG
ATAAGATCATGGCCGTGGTTGGGGACCGGCCCACCCTCTTGCAATTCATC
CACCTTGTGAGTGCGCGGAAGTGTCGCCGTCGGCCTCTCCGGGTCCAGAG
GTATTCGCCGACACCATTTTTTTGCGGGGCTCCTCACCCACACACAAGAG
CGTGCGTGCTGCACACCCCCAGCCGCCAGCGTTTCGCTTCGCTCTTTGCT
CCCTCGTTCCTACCCGTGCTAGTGTTTCATTTCACTGTAATTCTCCTTAC
TTGTTCCTTAGTGGGCCGCTCTACGCAAATCAGTCTCACCCTTTATTCGT
GTTGGCCATCGATCCACTCATGCATCCATCAATCCATCTATTCTCCCTGT
TAA
back to top