mRNA_D-mesarthrocarpus_Contig9769.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9769.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9769.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9769.1.1 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.860e-20
Identity = 142/447 (31.77%), Postives = 174/447 (38.93%), Query Frame = 1 
Query:   13 AVVMKLCSCTSTLVSEMPYKPLAIIPQASASXXXXXXXXXPQGVPAGARRERMDRVNSSALFGELLGELMAALSAIMMSGDREAGARVAASQALSATLSTKRPLETVDAFLRQFSLPCSGGAPPPPPWHRGRGAGRRDSSCGLRAPSIRATPPTLVSPSWPWPARGRGLVVGGRQPASSSRMPLQPTAAEPYPMVAQRQEGGA---GGVIQSQEKVQPSSVRSGQGAEEECPPPRRRLLGV---------------------GVRA-EAVGNRSAHEAPPPSPPGAXXXXXGVEQGPSSLLPPPEALEPDP------GAGLKRGGED-FVGWLVRLADMPGAPQAEALGLLARLGRTYPWCL---CPERG---EPWTACDYPGAGDGSGARDMSLRGSGGGKGRRGKEEDRVPELLLRCFASSNQNIRLHALKVLEGYLAARAESVA 1239
            AVV KLCSCT  L++EMPY        A   XXXXXXXXX                       E LG+L+  L+ +M+    E  AR+AASQAL+A  STK P+  +D+FL  F    +GG P               SSC       RATPP     S      G   V G     + S +PL+P +A+       R  GG    GGV                                                     G+RA +  G R++ + PPP P  A                    L          G G+  GG D FV  L+ LA  PG  +AEALGLL R+GR+YP  L   C  RG   E  TA  +                            +RV  LLLRCFA  +QN+RLHALKVLE  L ARAE  A
Sbjct:  465 AVVAKLCSCTGALIAEMPYATSQAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEESLGDLLRELARLMVDVAAEPSARIAASQALTAVFSTKEPIAAIDSFLLSFRCSAAGGLP---------------SSCRGSWGGSRATPPPSSPASAARRGNGANAVAGS---GAWSPLPLRPGSADDR---GNRFVGGVARNGGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVXXXXXGGLRASDREGVRASDQMPPPLPREATVDDDTAPAXXXXXXXXXXGLASASEGANGRGDGVDGGGSDSFVDRLIALAGAPGQLRAEALGLLTRIGRSYPAHLSGGCTARGTVAEKTTATTW----------------------------ERVSALLLRCFADPDQNLRLHALKVLEALLLARAEQAA 862
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BLAST of mRNA_D-mesarthrocarpus_Contig9769.1.1 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 7.660e-17
Identity = 142/494 (28.74%), Postives = 179/494 (36.23%), Query Frame = 1 
Query:   13 AVVMKLCSCTSTLVSEMPYKPLAIIPQASASXXXXXXXXXPQGVPAGARRERMDRVNSSALFGELLGELMAALSAIMMSGDREAGARVA---------------------------------------------ASQALSATLSTKRPLETVDAFLRQFSLPCSGGAPPPPPWHRGRGAGRRDSSCGLRAPSIRATPPTLVSPSWPWPARGRGLVVGGRQPASSSRMPLQPTAAEPYPMVAQRQEGGAGGVIQS------------------------QEKVQPSSVRSGQGAEEECPPPRRRLLGVGVRA-------EAVGNRSAHEAPPPSP------PGAXXXXXGVEQGPSSLLPPPEALEPDPGAGLKRGGEDFVGWLVRLADMPGAPQAEALGLLARLGRTYPWCL---CPERG---EPWTACDYPGAGDGSGARDMSLRGSGGGKGRRGKEEDRVPELLLRCFASSNQNIRLHALKVLEGYLAARAE 1230
            AVV KLCSCT  L++EMPY        A   XXXXXXXXX                   +   E LG+L+  L+ +M+    E  AR+A                                             +SQAL+A  STK P+  +D+FL  F    +GG P               SSCG      RATPP+    S      G   V G   P + S +PL+P +A+       R     GGV ++                                                R   VG RA       +  G R++ + PPP P                   P+ L  P E        G   GG+ FV  L+ LA  PG  +AEALGLL R+GR+YP  L   C  RG   E  TA  +                            +RV  LLLRCFA  +QN+RLHALKVLE  L ARAE
Sbjct:  453 AVVAKLCSCTGALIAEMPYATSQAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVEESLGDLLRELARLMVDVAAEPSARIAGASFFHDXXXXXXXXXNLLYFCLALLCSVLVQSWPLDRASYRSVSSSQALTAVFSTKEPVAAIDSFLLSFRCSAAGGLP---------------SSCGGSWGGSRATPPSSSPASAARRGNGANAVAG---PGAWSPLPLRPGSAD------DRGNRFVGGVARNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRGADVGGRARGGLRASDRRGARASDQMPPPLPRESTVDDDTAPAAAXXXPAPAGLAAPSEGANDRGDDGDGGGGDSFVDRLIALAGAPGQLRAEALGLLTRIGRSYPAHLSGGCSARGAVAETTTATTW----------------------------ERVSALLLRCFADPDQNLRLHALKVLEALLLARAE 894
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9769.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH12_ECTSI1.860e-2031.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K415_9PHAE7.660e-1728.74DUF4042 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9769contigD-mesarthrocarpus_Contig9769:352..2318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1460
Hectar predicted targeting categoryother localisation
Exons2
Cds size1458
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791128.4098668-CDS-D-mesarthrocarpus_Contig9769:351..6311680791128.4098668-CDS-D-mesarthrocarpus_Contig9769:351..631Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9769 352..631 +
1680791128.424022-CDS-D-mesarthrocarpus_Contig9769:1140..23181680791128.424022-CDS-D-mesarthrocarpus_Contig9769:1140..2318Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9769 1141..2318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9769.1.1prot_D-mesarthrocarpus_Contig9769.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9769 352..2318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9769.1.1

>prot_D-mesarthrocarpus_Contig9769.1.1 ID=prot_D-mesarthrocarpus_Contig9769.1.1|Name=mRNA_D-mesarthrocarpus_Contig9769.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=486bp
MQCTAVVMKLCSCTSTLVSEMPYKPLAIIPQASASASASTSTSTPQGVPA
GARRERMDRVNSSALFGELLGELMAALSAIMMSGDREAGARVAASQALSA
TLSTKRPLETVDAFLRQFSLPCSGGAPPPPPWHRGRGAGRRDSSCGLRAP
SIRATPPTLVSPSWPWPARGRGLVVGGRQPASSSRMPLQPTAAEPYPMVA
QRQEGGAGGVIQSQEKVQPSSVRSGQGAEEECPPPRRRLLGVGVRAEAVG
NRSAHEAPPPSPPGAPSAAPGVEQGPSSLLPPPEALEPDPGAGLKRGGED
FVGWLVRLADMPGAPQAEALGLLARLGRTYPWCLCPERGEPWTACDYPGA
GDGSGARDMSLRGSGGGKGRRGKEEDRVPELLLRCFASSNQNIRLHALKV
LEGYLAARAESVAGRGAAGGRAGARSLEGGDGLEEQDAQQQSRGGPTEAL
GGTALEARWATTPTRRIADEHQTGAGAGARAGEVAR
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mRNA from alignment at D-mesarthrocarpus_Contig9769:352..2318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9769.1.1 ID=mRNA_D-mesarthrocarpus_Contig9769.1.1|Name=mRNA_D-mesarthrocarpus_Contig9769.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1967bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9769:352..2318+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAGTGTACGGCAGTGGTCATGAAGTTGTGCTCATGCACCAGCACGCT
GGTGTCAGAAATGCCCTACAAGCCTCTCGCCATCATCCCCCAGGCATCAG
CATCAGCATCAGCATCAACATCAACATCAACACCGCAGGGAGTTCCAGCA
GGAGCTAGGCGTGAACGAATGGACAGGGTCAATTCGTCTGCTTTGTTTGG
CGAGCTCCTGGGTGAGTTGATGGCTGCACTGTCAGCAATCATGATGTCGG
GAGACAGGGAGGCGGGGGCCAGGGTTGCAGGTGAGCGGGGCGTACACTCA
CACACCATGGTGGGAGATTGTGCTTAACCCTACCCCTAACCCTTCACAGA
GTATGATGGTGGCCTAGATTGGGGAAGCGGCTTGATCCCCTAGCTGGATC
CTCTCTCTTGGCATGGCTTGATTTGGAAGACTCCCCCTCAGTCACTGGAA
CAGGGTTGGGGCTGGGCTCAGAGGGGGGAGCTTCCACAGAGAGGTGGATA
CAGTAGCAATCCTTGCCCTTGTTTTTTGTAAGCACATAACACACCATTCC
ACACGTTGATGTAGGGGCACTTTGGAAGGCATAGTTCAAGCATTCGATGG
GTGCCATACTGTAGACCCCCAGATAACCGCCGAACGATAGTGCTGCTGCA
GCCTCAGAAACGCACCCTCTAAGAGACATCAGGATGACCGTGAACCTCCA
CCCCCGTCCCCCCCCCTCCCCTCCCCATGGCCACCCCTGCCTATCGTCGA
TTTTTTTGCCTGCCGGGCTCTCCCGTTCCCCACACCTAGCCTCGCAGGCG
CTCAGCGCCACCCTCTCGACCAAACGCCCGCTGGAGACAGTCGATGCTTT
TTTGCGGCAGTTTTCGCTTCCCTGCTCTGGCGGTGCCCCCCCCCCTCCCC
CCTGGCACCGTGGCAGGGGAGCGGGGAGAAGGGACTCATCTTGTGGGCTA
CGGGCACCATCAATACGGGCCACCCCACCAACACTGGTATCCCCATCTTG
GCCCTGGCCTGCGCGGGGAAGGGGCCTTGTCGTTGGGGGTCGCCAGCCAG
CCAGTAGCTCTCGCATGCCATTGCAACCAACCGCAGCGGAGCCTTATCCC
ATGGTTGCACAGCGGCAGGAGGGGGGGGCAGGGGGGGTAATACAGAGCCA
AGAAAAAGTCCAGCCATCTTCCGTGCGTAGTGGGCAGGGGGCAGAAGAGG
AGTGCCCCCCCCCAAGGAGAAGGCTGTTGGGGGTGGGTGTGAGGGCAGAG
GCCGTGGGGAACAGGAGCGCCCATGAGGCACCACCACCATCGCCACCTGG
GGCCCCATCAGCGGCCCCAGGAGTGGAGCAGGGGCCCAGCTCATTGCTAC
CTCCGCCTGAGGCTCTGGAACCAGATCCCGGGGCAGGCTTGAAGCGGGGG
GGGGAAGACTTTGTAGGCTGGCTTGTGAGGTTGGCGGACATGCCGGGGGC
ACCTCAAGCTGAGGCTCTGGGGTTGCTGGCCAGGCTGGGGAGGACATACC
CATGGTGCTTGTGCCCAGAGCGAGGAGAGCCATGGACAGCATGTGATTAC
CCTGGGGCAGGGGATGGTAGTGGGGCCAGAGACATGAGTTTACGTGGGTC
CGGGGGGGGCAAGGGACGGAGGGGCAAAGAGGAGGATCGCGTGCCAGAGC
TTCTGCTGAGGTGTTTCGCAAGCTCCAACCAGAACATCCGCCTGCACGCC
CTCAAGGTCCTGGAAGGTTACCTGGCCGCTAGGGCTGAATCAGTCGCTGG
GAGAGGGGCTGCAGGGGGCAGGGCCGGGGCAAGGAGCCTTGAGGGTGGAG
ATGGTTTGGAAGAACAGGACGCACAGCAGCAGTCAAGGGGAGGTCCCACG
GAGGCATTGGGGGGCACTGCCCTAGAAGCACGGTGGGCAACAACACCGAC
CAGGAGAATCGCGGATGAGCATCAGACAGGGGCTGGGGCCGGGGCCAGGG
CTGGGGAGGTGGCAAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9769:352..2318+

>mRNA_D-mesarthrocarpus_Contig9769.1.1 ID=mRNA_D-mesarthrocarpus_Contig9769.1.1|Name=mRNA_D-mesarthrocarpus_Contig9769.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1458bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9769:352..2318+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAGTGTACGGCAGTGGTCATGAAGTTGTGCTCATGCACCAGCACGCT
GGTGTCAGAAATGCCCTACAAGCCTCTCGCCATCATCCCCCAGGCATCAG
CATCAGCATCAGCATCAACATCAACATCAACACCGCAGGGAGTTCCAGCA
GGAGCTAGGCGTGAACGAATGGACAGGGTCAATTCGTCTGCTTTGTTTGG
CGAGCTCCTGGGTGAGTTGATGGCTGCACTGTCAGCAATCATGATGTCGG
GAGACAGGGAGGCGGGGGCCAGGGTTGCAGCCTCGCAGGCGCTCAGCGCC
ACCCTCTCGACCAAACGCCCGCTGGAGACAGTCGATGCTTTTTTGCGGCA
GTTTTCGCTTCCCTGCTCTGGCGGTGCCCCCCCCCCTCCCCCCTGGCACC
GTGGCAGGGGAGCGGGGAGAAGGGACTCATCTTGTGGGCTACGGGCACCA
TCAATACGGGCCACCCCACCAACACTGGTATCCCCATCTTGGCCCTGGCC
TGCGCGGGGAAGGGGCCTTGTCGTTGGGGGTCGCCAGCCAGCCAGTAGCT
CTCGCATGCCATTGCAACCAACCGCAGCGGAGCCTTATCCCATGGTTGCA
CAGCGGCAGGAGGGGGGGGCAGGGGGGGTAATACAGAGCCAAGAAAAAGT
CCAGCCATCTTCCGTGCGTAGTGGGCAGGGGGCAGAAGAGGAGTGCCCCC
CCCCAAGGAGAAGGCTGTTGGGGGTGGGTGTGAGGGCAGAGGCCGTGGGG
AACAGGAGCGCCCATGAGGCACCACCACCATCGCCACCTGGGGCCCCATC
AGCGGCCCCAGGAGTGGAGCAGGGGCCCAGCTCATTGCTACCTCCGCCTG
AGGCTCTGGAACCAGATCCCGGGGCAGGCTTGAAGCGGGGGGGGGAAGAC
TTTGTAGGCTGGCTTGTGAGGTTGGCGGACATGCCGGGGGCACCTCAAGC
TGAGGCTCTGGGGTTGCTGGCCAGGCTGGGGAGGACATACCCATGGTGCT
TGTGCCCAGAGCGAGGAGAGCCATGGACAGCATGTGATTACCCTGGGGCA
GGGGATGGTAGTGGGGCCAGAGACATGAGTTTACGTGGGTCCGGGGGGGG
CAAGGGACGGAGGGGCAAAGAGGAGGATCGCGTGCCAGAGCTTCTGCTGA
GGTGTTTCGCAAGCTCCAACCAGAACATCCGCCTGCACGCCCTCAAGGTC
CTGGAAGGTTACCTGGCCGCTAGGGCTGAATCAGTCGCTGGGAGAGGGGC
TGCAGGGGGCAGGGCCGGGGCAAGGAGCCTTGAGGGTGGAGATGGTTTGG
AAGAACAGGACGCACAGCAGCAGTCAAGGGGAGGTCCCACGGAGGCATTG
GGGGGCACTGCCCTAGAAGCACGGTGGGCAACAACACCGACCAGGAGAAT
CGCGGATGAGCATCAGACAGGGGCTGGGGCCGGGGCCAGGGCTGGGGAGG
TGGCAAGG
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