mRNA_D-mesarthrocarpus_Contig9758.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9758.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9758.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9758.1.1 vs. uniprot
Match: D7FXU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.050e-15
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:  122 EQQRKLNPLETIIKVYTQNSGQKDTRPDRQYPFFTGLPLKPYFDRRVAQ 268
            E++RKLNPLET++ VYTQ S +KD RPDRQYPFFTGLPLKPYFDR   +
Sbjct:   30 EKKRKLNPLETLLMVYTQTSARKDARPDRQYPFFTGLPLKPYFDRPTVR 78
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BLAST of mRNA_D-mesarthrocarpus_Contig9758.1.1 vs. uniprot
Match: A0A6H5K320_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K320_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-14
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   32 VARHGDAPTQIATAGCRRNRGRLMCSGSQAEQQRKLNPLETIIKVYTQNSGQKDTRPDRQYPFFTGLPLKPYFDR 256
            V R G A T +A  G      +    G   E++RKLNPLET++ VYTQ S + D RPDRQYPF TGLPLKPYFDR
Sbjct:    6 VHRPGSAETSLAAGGAPPADSQQERQG--LEKKRKLNPLETLLMVYTQTSARTDARPDRQYPFLTGLPLKPYFDR 78
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9758.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXU9_ECTSI2.050e-1573.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K320_9PHAE1.480e-1456.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9758contigD-mesarthrocarpus_Contig9758:2456..3237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size651
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791127.4647808-UTR-D-mesarthrocarpus_Contig9758:2455..26561680791127.4647808-UTR-D-mesarthrocarpus_Contig9758:2455..2656Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9758 2456..2656 -
1680791127.5053425-UTR-D-mesarthrocarpus_Contig9758:3162..32371680791127.5053425-UTR-D-mesarthrocarpus_Contig9758:3162..3237Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9758 3163..3237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791127.4803705-CDS-D-mesarthrocarpus_Contig9758:2656..30221680791127.4803705-CDS-D-mesarthrocarpus_Contig9758:2656..3022Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9758 2657..3022 -
1680791127.4923532-CDS-D-mesarthrocarpus_Contig9758:3153..31621680791127.4923532-CDS-D-mesarthrocarpus_Contig9758:3153..3162Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9758 3154..3162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9758.1.1prot_D-mesarthrocarpus_Contig9758.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9758 2657..3162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9758.1.1

>prot_D-mesarthrocarpus_Contig9758.1.1 ID=prot_D-mesarthrocarpus_Contig9758.1.1|Name=mRNA_D-mesarthrocarpus_Contig9758.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=125bp
MPTKSGPLDVLGFPSRAAAQAEPVGDDHQGVHSEFWSKRHSSRPPVPFLH
GSAPQAVLRQASCSAGMNMRGEFGFPTRYHSPLTEGHCESIIHGWLGKIW
RVLLSMKQVEGNRCITASCIDLSR*
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mRNA from alignment at D-mesarthrocarpus_Contig9758:2456..3237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9758.1.1 ID=mRNA_D-mesarthrocarpus_Contig9758.1.1|Name=mRNA_D-mesarthrocarpus_Contig9758.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=782bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9758:2456..3237- (Discosporangium mesarthrocarpum MT17_79)
AGCGTTTATCCCTCAAACACCGCTGTCGCCCGTGGCACGTCATGGGGACG
CCCCTACTCAGATAGCCACGGCTGGATGCCGACGGTGAGAAAGAGAAACG
TAGTGTGCCTGACCTCAGCAATCGCCTGAAACTTTGTCCAGCACGTGATT
ATCGCCCTTGAGCAGTAATTGGGCTAATGACACCAATTCTTGTTTCGTAA
TGAACCCCTTCGTAGAAATCGGGGCCGCTTGATGTGCTCGGGTTCCCAAG
CAGAGCAGCAGCGCAAGCTGAACCCGTTGGAGACGATCATCAAGGTGTAC
ACTCAGAATTCTGGTCAAAAAGACACTCGTCCCGACCGCCAGTACCCTTT
CTTCACGGGTCTGCCCCTCAAGCCGTACTTCGACAGGCGAGTTGCTCAGC
TGGCATGAACATGAGAGGAGAATTTGGTTTCCCGACCAGGTATCATTCCC
CGTTGACAGAGGGGCATTGTGAGAGCATAATTCATGGATGGTTAGGGAAA
ATTTGGCGGGTGTTGCTCTCCATGAAGCAGGTAGAGGGGAACAGATGTAT
TACAGCCAGCTGTATCGATCTTTCGCGATGATCTGTGCGGCAAGCCGTGG
CTTTTGTGTTGACGTATGATATTAGTATAGCTCCTACGTGCAGTCTTTCT
GTCCATTGATCGGCAGGGTGACATTAATAGAAAAACCTTTTCCCTCTCTT
TCCGTCCGTTTCCTCTCTTCTTGATGTAGTGCGGTATGTGAATTATGCAC
CATGAACGTTTGACGTACAGTCCCTTTCAAGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9758:2456..3237-

>mRNA_D-mesarthrocarpus_Contig9758.1.1 ID=mRNA_D-mesarthrocarpus_Contig9758.1.1|Name=mRNA_D-mesarthrocarpus_Contig9758.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=375bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9758:2456..3237- (Discosporangium mesarthrocarpum MT17_79)
ATGCCGACGAAATCGGGGCCGCTTGATGTGCTCGGGTTCCCAAGCAGAGC
AGCAGCGCAAGCTGAACCCGTTGGAGACGATCATCAAGGTGTACACTCAG
AATTCTGGTCAAAAAGACACTCGTCCCGACCGCCAGTACCCTTTCTTCAC
GGGTCTGCCCCTCAAGCCGTACTTCGACAGGCGAGTTGCTCAGCTGGCAT
GAACATGAGAGGAGAATTTGGTTTCCCGACCAGGTATCATTCCCCGTTGA
CAGAGGGGCATTGTGAGAGCATAATTCATGGATGGTTAGGGAAAATTTGG
CGGGTGTTGCTCTCCATGAAGCAGGTAGAGGGGAACAGATGTATTACAGC
CAGCTGTATCGATCTTTCGCGATGA
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