mRNA_D-mesarthrocarpus_Contig9744.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9744.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9744.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9744.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9744contigD-mesarthrocarpus_Contig9744:741..3301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size957
Hectar predicted targeting categoryother localisation
Exons3
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791126.8846602-CDS-D-mesarthrocarpus_Contig9744:740..7681680791126.8846602-CDS-D-mesarthrocarpus_Contig9744:740..768Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9744 741..768 -
1680791126.8956192-CDS-D-mesarthrocarpus_Contig9744:2072..25631680791126.8956192-CDS-D-mesarthrocarpus_Contig9744:2072..2563Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9744 2073..2563 -
1680791126.9142518-CDS-D-mesarthrocarpus_Contig9744:2864..30531680791126.9142518-CDS-D-mesarthrocarpus_Contig9744:2864..3053Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9744 2865..3053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791126.9277894-UTR-D-mesarthrocarpus_Contig9744:3053..33011680791126.9277894-UTR-D-mesarthrocarpus_Contig9744:3053..3301Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9744 3054..3301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9744.1.1prot_D-mesarthrocarpus_Contig9744.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9744 741..3053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9744.1.1

>prot_D-mesarthrocarpus_Contig9744.1.1 ID=prot_D-mesarthrocarpus_Contig9744.1.1|Name=mRNA_D-mesarthrocarpus_Contig9744.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=236bp
MGWGGGNSVRVWWQPPRSMRLFFIMILSQAFTNVDLAGTGSPHPFAEGVD
RTISPESRLDNTQMQPTLAVGKPAGAPASVGSPPAETYAPPFPAEWEEGD
DLLHPSVTAAGVGLIHSRGFSSSQSPNTGAYQPEVQCGDGSKTSVPHCPP
GQPPWKCPSPGELLEGRVPGSECEGGGLSSSGGERWPEYSGEPLPVPEGI
EFDPPVLIFPESQVCTVHVQTVVVHNRNNPRDFLGG
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mRNA from alignment at D-mesarthrocarpus_Contig9744:741..3301-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9744.1.1 ID=mRNA_D-mesarthrocarpus_Contig9744.1.1|Name=mRNA_D-mesarthrocarpus_Contig9744.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2561bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9744:741..3301- (Discosporangium mesarthrocarpum MT17_79)
TCCTCGTGCACGAAACCCAGCTGAGGGGCCAAGGGCCTAGTGCGACCCTT
AGCGGTTTGCAGACTGCATGGGGTGGGAATACCATCAAGAAATATCCCGC
CCCCTCAGCTCTGGCAAAGCATTCTTGGGTGTCTGGAAACTGACCTCGGT
TCGATCTGGCGAGTTCAGGGTTCCCTGACTGTGCTCTTGCATTCTCTCCA
AGGACCCTATCCCACAATAGAAGTAGTTCTGATTTCCTCATACTATCAAT
GGGCTGGGGAGGGGGTAATTCGGTGCGGGTTTGGTGGCAGCCCCCTCGAA
GCATGCGCCTATTTTTCATCATGATTTTATCTCAAGCCTTCACGAACGTG
GACCTCGCGGGAACTGGCAGCCCTCACCCGTTCGCGGAGGGAGTGGATCG
AACGATCTCGCCTGAAAGTCGACTGGACAATACACAGGTGGGTTACCCAC
TGATGATGCAGTTCACGATGTGGAAAGGCTGAACATCCGTGTCTTGGATC
CTCCCCAAGAATATTGTGTCACTCTCTCTCACGACCAAACTGTGGCAGTT
TGTGGTTGTGGGGGTGAAACGGGAGCTTGACAACCTCCGCTACAATCAAT
TGAATGATCCTTCCGTAATCTTTTCCTTATCAGGGTTTTGGACTGTAGAA
GCTGTCGTTTTTTTTTTCGCTGAAAGAGACCAAACACCAAGCTCAGCTTT
TGCCTCTCAGCTTTTGCCTTACTCTCTTCACAACACAGATGCAGCCGACA
CTGGCTGTGGGGAAACCCGCAGGTGCGCCTGCGTCCGTTGGGTCCCCACC
CGCGGAGACCTATGCCCCACCGTTTCCCGCTGAGTGGGAGGAGGGTGATG
ATCTCTTGCACCCCTCGGTCACCGCGGCTGGGGTCGGCTTGATTCACTCC
CGCGGGTTTTCTTCGTCCCAGTCACCAAACACAGGGGCTTACCAGCCAGA
GGTGCAGTGCGGCGATGGGTCAAAGACCAGCGTCCCTCATTGCCCGCCAG
GACAGCCGCCGTGGAAGTGTCCCAGCCCGGGGGAACTTCTTGAGGGGCGA
GTTCCGGGAAGTGAGTGTGAGGGGGGTGGGTTGTCTTCTAGTGGGGGCGA
ACGGTGGCCGGAGTATTCAGGAGAGCCGTTGCCTGTGCCCGAGGGGATAG
AATTCGATCCGCCGGTCTTGATATTTCCGGAGAGCCAAGTGTGCACGGTG
CATGTGCAGACTGTCGTCGTACACAACAGGTGAGAGGTTATAGGAGTGCG
TGTGTGGTGTGTTAGTTAACACGCTTTGCCAGAGTGTGCGTGTGGGGGGG
GGGGGGGACTGTGCCTCTGTTCCCTTGGATTTTATGACCCTACTACCGGT
ACATATACTGTCTAACCCTAACCCCAACCCTAACCCAACCTTTCGCAGGA
GCTCTCTCTCTATTGATAGGATTCAAGCAGAAGAGACTGGGTATTAGTGT
GTTATGTTAAGGTTAGGGATAAGGTTAGGAGTTTCGAATGCATTTCCGAA
CCCTGTAGTGTACAAGGCAGTGGGATTTGGGTATGGGATAGGGTTAGGGT
TAGGGTTAGATTGTGTTGGATCCAACCCTCACTTACCCTTTACTTCTCGC
CAGGACACATGTCCTAACCGTAACCCTACCCCTGACCGTTGCTGTGCCAC
CCTACCCCAACAACCCTAACCCTAACCCCAACCAGTGCTCAGATGAATTC
CATGCACACTTTTCTTTAACCCTCAGCCTAACCCTAAGTTTACCTCTATC
GCTAACCCTAAGCTAGCCCTCACCCTAAGCTAGCCCTAACCCTAACCCTA
ACCCTAACCCTGTTACCCTAACCCTAACTGTAACCCTAACCCTAACCCTG
TTACCCTAACCCTAACTGTAACCCTAATCCTAACCCTAAGCCTAAACCTA
GACCTAAGCCTAAGCCTAACACTGACCCAAACCCAAACCCTAACCCTAAC
CCTGACCCTAACCCTAACCCTAACCTAGCCCTAACCCTGTTACCCTAACC
CTAACCCTGTTACCCTAACCCTAACTGTAACCCTAATCCTAACCCTAAGC
CTAAGCCTAACACTGACCCAAACCCTAACCCTAACCCTAACCCTAACCCT
AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA
GCCTAAGCCTAAACCTAGACCTAAGCCTAACCCTAACACTGACCCAAACC
CTAACCCTAACCCTAGCCCTAGCCCTAACCCTTACCCTGTTACCCTAACC
CTAACTGTAACCCTAATCCTAACCCTAAGCCTAAACCTAGACCTGAGCCT
AAGCCTAACACTGACCCAAACCCTAACCCTAATCCTGACCCTAGCCCTGC
TGGAGATCGAACCCTTCTCACTCTCCATTGCTTGCATACATTTGTCCCCC
ACGGCACTTCCACCCCCTCACTCCCCCCTCCACTGCACTCCATCTCCCTC
TTTCCTCATTTCCCCCATACTCCCGTGCCCCTCTGTCCTCACCCCGACTG
GCCTGCAAACCAAAATGCCTCACCACAATTTAGGAACAACCCTCGCGACT
TTCTGGGGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9744:741..3301-

>mRNA_D-mesarthrocarpus_Contig9744.1.1 ID=mRNA_D-mesarthrocarpus_Contig9744.1.1|Name=mRNA_D-mesarthrocarpus_Contig9744.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=708bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9744:741..3301- (Discosporangium mesarthrocarpum MT17_79)
ATGGGCTGGGGAGGGGGTAATTCGGTGCGGGTTTGGTGGCAGCCCCCTCG
AAGCATGCGCCTATTTTTCATCATGATTTTATCTCAAGCCTTCACGAACG
TGGACCTCGCGGGAACTGGCAGCCCTCACCCGTTCGCGGAGGGAGTGGAT
CGAACGATCTCGCCTGAAAGTCGACTGGACAATACACAGATGCAGCCGAC
ACTGGCTGTGGGGAAACCCGCAGGTGCGCCTGCGTCCGTTGGGTCCCCAC
CCGCGGAGACCTATGCCCCACCGTTTCCCGCTGAGTGGGAGGAGGGTGAT
GATCTCTTGCACCCCTCGGTCACCGCGGCTGGGGTCGGCTTGATTCACTC
CCGCGGGTTTTCTTCGTCCCAGTCACCAAACACAGGGGCTTACCAGCCAG
AGGTGCAGTGCGGCGATGGGTCAAAGACCAGCGTCCCTCATTGCCCGCCA
GGACAGCCGCCGTGGAAGTGTCCCAGCCCGGGGGAACTTCTTGAGGGGCG
AGTTCCGGGAAGTGAGTGTGAGGGGGGTGGGTTGTCTTCTAGTGGGGGCG
AACGGTGGCCGGAGTATTCAGGAGAGCCGTTGCCTGTGCCCGAGGGGATA
GAATTCGATCCGCCGGTCTTGATATTTCCGGAGAGCCAAGTGTGCACGGT
GCATGTGCAGACTGTCGTCGTACACAACAGGAACAACCCTCGCGACTTTC
TGGGGGGG
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