mRNA_D-mesarthrocarpus_Contig9743.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9743.1.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI) HSP 1 Score: 169 bits (429), Expect = 5.290e-46 Identity = 76/143 (53.15%), Postives = 107/143 (74.83%), Query Frame = 1 Query: 4 GGVSHLYRLTVNLVSVRDLDRAVYTSARYHYPYLGTTTSVRTAVVWVPPRSETPLSNSCCTHLFAMTPERLRATAKDHPLVVSLISKDQFSEEELGAVALPLEELLSTSPQFFRCPNTNKTFTTATGFQSHIRSRERAGNIPP 432 G V YR+++NL SV+DL+ A Y A YHYPY GT+ VRT++VW PR +TPLSNSCCT F M+ +RL AT +D +VVSL +KD+F EEE+G V +PL++++ + PQ+FRC +T KTFT+ GF++H+++R+RAG I P Sbjct: 735 GAVPRRYRMSINLASVKDLENAAYVVACYHYPYFGTSAPVRTSMVWAAPRMDTPLSNSCCTFSFGMSFDRLAATVQDRSMVVSLRNKDRFKEEEVGVVTIPLQDVVESPPQYFRCRDTGKTFTSMAGFKAHLKARQRAGVITP 877
BLAST of mRNA_D-mesarthrocarpus_Contig9743.1.1 vs. uniprot
Match: A0A6H5LE02_9PHAE (DUF3668 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE02_9PHAE) HSP 1 Score: 167 bits (423), Expect = 3.300e-45 Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = 1 Query: 10 VSHLYRLTVNLVSVRDLDRAVYTSARYHYPYLGTTTSVRTAVVWVPPRSETPLSNSCCTHLFAMTPERLRATAKDHPLVVSLISKDQFSEEELGAVALPLEELLSTSPQFFRCPNTNKTFTTATGFQSHIRSRERAGNIPP 432 V YR+++NL SV+DL+ A Y A YHYPY GT+ VRT++VW PR +TPLSNSCCT F M+ +RL AT +D LVVSL +KD+F EEE+G V +PL++++ + PQ+FRC +T KTFT+ GF++H++SR+RAG P Sbjct: 433 VPRSYRMSINLASVKDLENAAYVVACYHYPYFGTSAPVRTSLVWAAPRMDTPLSNSCCTFSFGMSFDRLAATVEDRSLVVSLRNKDRFKEEEVGVVTIPLQDVVKSPPQYFRCRDTGKTFTSMAGFKAHLKSRQRAGVTTP 573
BLAST of mRNA_D-mesarthrocarpus_Contig9743.1.1 vs. uniprot
Match: A0A6H5JVP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP1_9PHAE) HSP 1 Score: 155 bits (392), Expect = 4.940e-41 Identity = 72/141 (51.06%), Postives = 101/141 (71.63%), Query Frame = 1 Query: 10 VSHLYRLTVNLVSVRDLDRAVYTSARYHYPYLGTTTSVRTAVVWVPPRSETPLSNSCCTHLFAMTPERLRATAKDHPLVVSLISKDQFSEEELGAVALPLEELLSTSPQFFRCPNTNKTFTTATGFQSHIRSRERAGNIPP 432 V YR++++L SV+DL+ A Y A YHYPY GT+ VRT++VW PR +TPLSNSCCT F M+ +RL AT +D LVVSL + D+F EEE+G VA+PL++++ + PQ RC +T K FT+ GF++H++SR+ AG P Sbjct: 749 VPRSYRMSIDLASVKDLENAAYVVACYHYPYCGTSAPVRTSLVWAAPRMDTPLSNSCCTFSFGMSFDRLAATVQDRSLVVSLRNNDRFKEEEVGVVAIPLQDVVESPPQHVRCRDTGKAFTSMAGFKAHLKSRQWAGVTTP 889
BLAST of mRNA_D-mesarthrocarpus_Contig9743.1.1 vs. uniprot
Match: A0A0H5RA38_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RA38_9EUKA) HSP 1 Score: 60.8 bits (146), Expect = 5.740e-8 Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = 1 Query: 16 HLYRLTVNLVSVRDLDRAVYTSARYHYPYLGTTTSVRT-AVVWVPPRSETPLSNSCCTHLFAMTPERLRATAKDHPLVVSLISKDQFSEEE-LGAVALPLEELLS 324 H YR++V+L SVRDLDR+ ARY YP G + +V T V E L NS C M P L + P VV +I+K++ E +G L + ELLS Sbjct: 260 HHYRISVDLRSVRDLDRSGLVYARYVYPLFGDSETVATHPAVQFELNHEVFLPNSFCAFELDMKPTELERVLSEDPFVVEVIAKNEDQTESVIGLATLNMTELLS 364 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9743.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9743.1.1 >prot_D-mesarthrocarpus_Contig9743.1.1 ID=prot_D-mesarthrocarpus_Contig9743.1.1|Name=mRNA_D-mesarthrocarpus_Contig9743.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=148bp RGGVSHLYRLTVNLVSVRDLDRAVYTSARYHYPYLGTTTSVRTAVVWVPPback to top mRNA from alignment at D-mesarthrocarpus_Contig9743:128..2600- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9743.1.1 ID=mRNA_D-mesarthrocarpus_Contig9743.1.1|Name=mRNA_D-mesarthrocarpus_Contig9743.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2473bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9743:128..2600- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9743:128..2600- >mRNA_D-mesarthrocarpus_Contig9743.1.1 ID=mRNA_D-mesarthrocarpus_Contig9743.1.1|Name=mRNA_D-mesarthrocarpus_Contig9743.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=444bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9743:128..2600- (Discosporangium mesarthrocarpum MT17_79)back to top |