mRNA_D-mesarthrocarpus_Contig974.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig974.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig974.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.320e-30
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 DKTSREALKFRRRFRVPFPFFEELVKEVESQGWLGPEIADASGRPGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGNDL-KVMQRCGAVGFPGAV 369
            D T+REA +FR  FRVP+PFF  LV+ V  + W     +D +GR  +P++LKVLA LQIL R N F DI  +S +S     STFH FC+ FA ++Y++++Y+P G DL KVM++   +GFPGAV
Sbjct:  123 DHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAV 246          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.500e-27
Identity = 63/124 (50.81%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 DKTSREALKFRRRFRVPFPFFEELVKEVESQGWLGPEIADASGRPGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGN-DLKVMQRCGAVGFPGAV 369
            D TSR A +FR  FR+P+PFF ELV  V+ + W      DASGR GIP+QLKVLA LQIL R NCF DI  +S +S   A +TFH F   FA +MY + I++P G+   KVM +   +GF GA 
Sbjct:  107 DPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGAT 230          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.150e-25
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    1 DKTSREALKFRRRFRVPFPFFEELVKEVESQGWLGPEIADASGRPGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGNDL-KVMQRCGAVGFPGAVFH*RDPCAVGEDTHI 414
            D T+  A  FR RFRVP+PFF+ELVK   ++ W  P   DA+ R GIPL+LKVL      G+ NCFDD++QLS MS+S AQ+ FH FC   A +M+++ IY+P G  L +VM     +G  GA       C   + THI
Sbjct:   87 DHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGA-------CGSTDVTHI 212          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.150e-24
Identity = 57/129 (44.19%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 DKTSREALKFRRRFRVPFPFFEELVKEVESQGWLGP-----EIADASGRPGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGNDLK-VMQRCGAVGFPGAV 369
            D ++REA +FRRRFRVP+PFF  LV EV++  W G      E+     R  IP++ KVLAVL+ILGR N FDD+ +++GM ++     FH F E FAC+++  W+ +P  ++LK +M+    VG  GA+
Sbjct:   78 DPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNEDELKDIMKTYDEVGMSGAM 206          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.160e-24
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    7 TSREALKFRRRFRVPFPFFEELVKEVESQGWLGPEIADASGRPGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGNDLK-VMQRCGAVGFPGAV 369
            +SREA  FR  FRVP  FF   V  V +         D +GR  +PL+LKVL VLQ+LGR NCF D+ QLS MS+  A+ +FH FC+CF+  ++ +W+ +PEG  LK V    G +G PGAV
Sbjct:   65 SSREAKAFRSDFRVPHEFFRHFVDLVRTV--FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAV 184          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.320e-24
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 DKTSREALKFRRRFRVPFPFFEELVKEVESQGWLGP-----EIADASGRPGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGNDLK-VMQRCGAVGFPGAV 369
            D ++REA +FRRRFRVP+PFF  LV EV++  W G      E+     R  IP++ KVLAVL+ILGR N FDD+ +++GM ++     FH F E FA + +  W+ +P  ++LK +M+    VG  GA+
Sbjct:   78 DPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDELKDIMKTYDEVGMSGAM 206          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.610e-23
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 DKTSREALKFRRRFRVPFPFFEELVKEVESQGWLGP-------EIADASGRPGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGNDLK-VMQRCGAVGFPGAV 369
            D ++REA +FRRRFRVP+PFF  LV EV++  W  P       E+     R  IP+++KVLAVL+ILGR N FDD+ +++GM ++     FH F E FA + +  W+ +P   +LK +M+    VG  GA+
Sbjct:   77 DPSTREAKQFRRRFRVPYPFFLSLVDEVKAGKW--PVFTTDEFELGGRGTRRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRMPNEVELKEIMKTYDEVGMTGAM 205          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.830e-23
Identity = 57/121 (47.11%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   10 SREALKFRRRFRVPFPFFEELVKEVESQGWLGPEIADASGRPGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGNDLK-VMQRCGAVGFPGAV 369
            SREA  FR  FRVP+ FF E V+ V           D  GR  +PL+LKVL VLQ+LGR NCF D+   S MS++ A+ +FH FC CFA  ++  WI +PEG  L+ V     ++G+PGAV
Sbjct:  164 SREARAFRADFRVPYEFFLEFVEMVRPV--FPAREHDVCGRLCVPLELKVLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAV 282          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 9.750e-20
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 DKTSREALKFRRRFRVPFPFFEELVKEVESQGWLG--PEIADASGR---PGIPLQLKVLAVLQILGRRNCFDDIQQLSGMSQSRAQSTFHHFCECFACDMYEKWIYVPEGNDLK-VMQRCGAVGFPGAVFH*RDPCAVGED-THI 414
            D T+++A  FRRRFR+P+P F ELVKE++S GW G   +  D  GR   P IP++LKVL      GR N FDDI QLS +S+   Q  FH F + FA + + K +  P+G  L+ +++    VGF G        CA   D THI
Sbjct:   82 DPTTKDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTTDATDLGGRGTRPCIPVELKVL------GRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGG--------CAGSMDCTHI 212          
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.070e-19
Identity = 54/151 (35.76%), Postives = 82/151 (54.30%), Query Frame = 2
Query:  371 STDVTHVRWERIPISEALHYMGKEGFRTVAYQLAVDHTGFARGVTVGLTGAKYDETIMQYNGAIQKIRH----DPKYTLSVINKLVDYEGNEYTKKGTYIIGNGGYHKWRCTISPFKASITRAQVKGTERLESVGKGVECFLGRTKGRWRI 811
            S D TH++W   P SE   ++GKEG+ T+ Y +AV H       T G  GA+ D+TI++++    ++R+    D +YTL         +G +  +KG ++I  GGYH W+   SP +   T+A+     +LE V K  EC  G  KGR+RI
Sbjct:  171 SMDGTHLQWTVCPYSERSSHVGKEGYATLVYNVAVSHDMRVLSCTRGFPGAQNDKTIVKFDKFATEVRNGWYKDVEYTLK------GEDGGDIKEKGPWLIVGGGYHNWKQLQSPIRVPSTKAESGFKRQLEGVRKDSECCFGVVKGRFRI 315          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig974.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH7_9PHAE3.320e-3049.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE6.500e-2750.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE1.150e-2546.04DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K8I3_9PHAE1.150e-2444.19Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE3.160e-2447.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRQ7_9PHAE3.320e-2443.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE4.610e-2342.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE8.830e-2347.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE9.750e-2042.76DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KLF8_9PHAE1.070e-1935.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig974contigD-mesarthrocarpus_Contig974:5098..6292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size811
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.16e-28
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size381
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791126.361096-UTR-D-mesarthrocarpus_Contig974:5097..52531680791126.361096-UTR-D-mesarthrocarpus_Contig974:5097..5253Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig974 5098..5253 +
1680791126.3749118-UTR-D-mesarthrocarpus_Contig974:5348..56221680791126.3749118-UTR-D-mesarthrocarpus_Contig974:5348..5622Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig974 5349..5622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791126.3865552-CDS-D-mesarthrocarpus_Contig974:5622..58741680791126.3865552-CDS-D-mesarthrocarpus_Contig974:5622..5874Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig974 5623..5874 +
1680791126.401997-CDS-D-mesarthrocarpus_Contig974:6163..62921680791126.401997-CDS-D-mesarthrocarpus_Contig974:6163..6292Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig974 6164..6292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig974.3.1prot_D-mesarthrocarpus_Contig974.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig974 5623..6292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig974.3.1

>prot_D-mesarthrocarpus_Contig974.3.1 ID=prot_D-mesarthrocarpus_Contig974.3.1|Name=mRNA_D-mesarthrocarpus_Contig974.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=127bp
MGKEGFRTVAYQLAVDHTGFARGVTVGLTGAKYDETIMQYNGAIQKIRHD
PKYTLSVINKLVDYEGNEYTKKGTYIIGNGGYHKWRCTISPFKASITRAQ
VKGTERLESVGKGVECFLGRTKGRWRI
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mRNA from alignment at D-mesarthrocarpus_Contig974:5098..6292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig974.3.1 ID=mRNA_D-mesarthrocarpus_Contig974.3.1|Name=mRNA_D-mesarthrocarpus_Contig974.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig974:5098..6292+ (Discosporangium mesarthrocarpum MT17_79)
GACAAGACTTCGCGGGAGGCGCTGAAGTTCAGGAGGCGGTTTCGAGTCCC CTTTCCATTCTTCGAGGAGTTAGTGAAGGAGGTTGAAAGCCAAGGGTGGC TTGGTCCGGAGATCGCAGATGCCAGCGGCCGCCCCGGCATACCCCTCCAG CTGAAGGTGAGCATTCCCGCCAGTCCGAATTTGTGTGTGGAAGGGCTGGC TTCTCTGGCCTTCACGATCCAACCCCTCTGGATCCGACTTGTCACCCACA GGTGCTGGCTGTTCTCCAAATCCTCGGCAGGAGAAACTGTTTCGACGATA TTCAGCAACTTTCGGGCATGTCTCAGAGCAGAGCACAGAGTACGTTTCAC CACTTCTGCGAGTGTTTCGCGTGTGATATGTACGAAAAGTGGATTTATGT ACCAGAGGGCAACGATTTGAAGGTCATGCAAAGATGTGGAGCTGTGGGAT TTCCTGGAGCTGTGTTCCACTGACGTGACCCATGTGCGGTGGGAGAGGAT ACCCATATCTGAAGCTCTACACTACATGGGTAAGGAGGGCTTCAGGACAG TTGCCTATCAACTGGCTGTTGATCACACTGGGTTCGCACGGGGGGTGACT GTTGGGCTTACTGGAGCAAAATATGACGAGACAATCATGCAGTACAATGG CGCTATCCAGAAAATAAGGCATGACCCCAAATACACACTAAGTGTGATCA ACAAGCTTGTGGACTACGAAGGGAACGAGTACACCAAGAAAGGCACCTAC ATCATAGGCAATGGGGGCTACCACAAGGTGAGGATATTGCGTGACTTTGT ATGTCATACTTGCACTGCTGTCGTCGTCCTTGGGTGGTACAAGTATTTTC TTCTTTGGGTTATGGAATGCTCACTGTCCCGTTGTTTTCCCAGGGACTCC ATAGGCCGCTCCCTCCTTTTCCCCCCATTTTCACGAAACACAAGGTTTTA ACTCCTGTGGTAAGACTTATGTCTTGGGTATGTCCATGTTATGCTCCTGC AAAAGGGAGTGCTCATGACTCTAGCAAGTTAACAGTCCTTTCCAAACCTG GTCTTTGCGTTTGCAGTGGAGGTGCACGATAAGCCCCTTTAAGGCATCCA TCACACGGGCACAGGTAAAGGGGACCGAAAGACTGGAGAGTGTAGGCAAG GGTGTCGAGTGCTTCCTTGGCAGAACCAAGGGCCGCTGGAGAATC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig974:5098..6292+

>mRNA_D-mesarthrocarpus_Contig974.3.1 ID=mRNA_D-mesarthrocarpus_Contig974.3.1|Name=mRNA_D-mesarthrocarpus_Contig974.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=381bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig974:5098..6292+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGTAAGGAGGGCTTCAGGACAGTTGCCTATCAACTGGCTGTTGATCA
CACTGGGTTCGCACGGGGGGTGACTGTTGGGCTTACTGGAGCAAAATATG
ACGAGACAATCATGCAGTACAATGGCGCTATCCAGAAAATAAGGCATGAC
CCCAAATACACACTAAGTGTGATCAACAAGCTTGTGGACTACGAAGGGAA
CGAGTACACCAAGAAAGGCACCTACATCATAGGCAATGGGGGCTACCACA
AGTGGAGGTGCACGATAAGCCCCTTTAAGGCATCCATCACACGGGCACAG
GTAAAGGGGACCGAAAGACTGGAGAGTGTAGGCAAGGGTGTCGAGTGCTT
CCTTGGCAGAACCAAGGGCCGCTGGAGAATC
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