mRNA_D-mesarthrocarpus_Contig9737.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9737.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9737.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: W7U4R7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4R7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.330e-14
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   16 LCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG 150
            +CGVAAGCTKSSITAHF+LR NIAD++AKENAQETAVTL G+V G
Sbjct:  190 MCGVAAGCTKSSITAHFSLRGNIADVSAKENAQETAVTLFGIVGG 234
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: D7FQ06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ06_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.780e-14
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   10 QGLCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG 150
            + LCGVAAGCTK+SIT+HFAL+ N+ADI+AKENAQETAV +CGM+ G
Sbjct:  194 KALCGVAAGCTKTSITSHFALKQNMADISAKENAQETAVNVCGMLLG 240
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: A0A7S2CTD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTD9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.470e-11
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   10 QGLCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVS 147
            + +CGV+AG TKSSITAH AL  N AD+AAKENAQET VTLCG+++
Sbjct:  141 KAMCGVSAGATKSSITAHMALTGNTADVAAKENAQETFVTLCGILA 186
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: A0A7S2WUK5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUK5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.770e-11
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 QGLCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG 150
            + +CGVAAG TK+SITAH ALR N AD+AAKE+AQETAVTL G++ G
Sbjct:  140 KAMCGVAAGSTKASITAHMALRGNNADVAAKESAQETAVTLVGIILG 186
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: A0A1V9Y4Y9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4Y9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.720e-10
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 QGLCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG 150
            + +CGVAAG T+SS+TAHFA   N+ADIAAKE +QET VTLCG++ G
Sbjct:  201 KAMCGVAAGATRSSLTAHFAKNDNMADIAAKEGSQETFVTLCGLLFG 247
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: A0A813KE75_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KE75_POLGL)

HSP 1 Score: 63.5 bits (153), Expect = 2.730e-10
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   10 QGLCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG 150
            + +CGV+AG TK+++TAHFALR N+AD+ AKE +QETAVTL G+++G
Sbjct:  204 KAMCGVSAGATKAALTAHFALRDNMADVQAKEGSQETAVTLMGLIAG 250
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: A0A7R9UTE8_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UTE8_DIALT)

HSP 1 Score: 61.6 bits (148), Expect = 8.890e-10
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   16 LCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSGP 153
            +CGVAAG T++SITAHFALR N+AD++ KE AQETAV+L G++  P
Sbjct:  181 MCGVAAGATRASITAHFALRDNLADVSTKEGAQETAVSLVGLLPLP 226
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: A0A6G0WTG5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTG5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.490e-10
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 QGLCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG 150
            + +CGVAAG T+SS+TAHFA + N+ADIAAKE +QET V +CG++ G
Sbjct:  198 KAMCGVAAGATRSSLTAHFAKQDNMADIAAKEGSQETFVNMCGLLGG 244
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: R1DHG9_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DHG9_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-9
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   16 LCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG 150
            +CG+ AG T++SITAHFAL  N+AD++AKE AQETAVTL G++ G
Sbjct:  184 ICGMVAGATRASITAHFALSGNLADVSAKEGAQETAVTLVGLLVG 228
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BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Match: A0A7S3WC01_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WC01_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 1.770e-9
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   16 LCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG 150
            +CG+ AG T++SITAHFAL  N+AD++AKE AQETAVTL G++ G
Sbjct:  166 ICGMVAGATRASITAHFALSGNLADVSAKEGAQETAVTLVGLLVG 210
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9737.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7U4R7_9STRA2.330e-1482.22Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
D7FQ06_ECTSI3.780e-1474.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CTD9_9STRA1.470e-1169.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2WUK5_9STRA7.770e-1170.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9Y4Y9_9STRA2.720e-1065.96Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A813KE75_POLGL2.730e-1061.70Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A7R9UTE8_DIALT8.890e-1065.22Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A6G0WTG5_9STRA9.490e-1061.70Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
R1DHG9_EMIHU1.310e-964.44Uncharacterized protein (Fragment) n=3 Tax=Emilian... [more]
A0A7S3WC01_EMIHU1.770e-964.44Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9737contigD-mesarthrocarpus_Contig9737:655..834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ06
Preferred nameC16orf58
PFAMsDUF647
Model size180
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.2e-15
EggNOG OGsKOG4249@1|root,KOG4249@2759|Eukaryota
Ec32 ortholog descriptionRoot UVB sensitive family
Ec32 orthologEc-01_007950.1
Descriptionresponse to UV-B
Cds size180
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791126.0644908-CDS-D-mesarthrocarpus_Contig9737:654..8341680791126.0644908-CDS-D-mesarthrocarpus_Contig9737:654..834Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9737 655..834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9737.1.1prot_D-mesarthrocarpus_Contig9737.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9737 655..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9737.1.1

>prot_D-mesarthrocarpus_Contig9737.1.1 ID=prot_D-mesarthrocarpus_Contig9737.1.1|Name=mRNA_D-mesarthrocarpus_Contig9737.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=60bp
MWQQGLCGVAAGCTKSSITAHFALRANIADIAAKENAQETAVTLCGMVSG
PAGGQGGGC*
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mRNA from alignment at D-mesarthrocarpus_Contig9737:655..834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9737.1.1 ID=mRNA_D-mesarthrocarpus_Contig9737.1.1|Name=mRNA_D-mesarthrocarpus_Contig9737.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=180bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9737:655..834+ (Discosporangium mesarthrocarpum MT17_79)
ATGTGGCAGCAGGGGCTGTGTGGGGTGGCGGCAGGGTGCACCAAGAGCTC
CATCACGGCCCACTTTGCCCTCCGTGCCAACATCGCCGACATTGCTGCCA
AGGAAAACGCACAGGAAACTGCAGTTACCCTGTGTGGGATGGTGAGTGGT
CCTGCAGGAGGGCAGGGGGGGGGGTGCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9737:655..834+

>mRNA_D-mesarthrocarpus_Contig9737.1.1 ID=mRNA_D-mesarthrocarpus_Contig9737.1.1|Name=mRNA_D-mesarthrocarpus_Contig9737.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=180bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9737:655..834+ (Discosporangium mesarthrocarpum MT17_79)
ATGTGGCAGCAGGGGCTGTGTGGGGTGGCGGCAGGGTGCACCAAGAGCTC
CATCACGGCCCACTTTGCCCTCCGTGCCAACATCGCCGACATTGCTGCCA
AGGAAAACGCACAGGAAACTGCAGTTACCCTGTGTGGGATGGTGAGTGGT
CCTGCAGGAGGGCAGGGGGGGGGGTGCTAG
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