mRNA_D-mesarthrocarpus_Contig973.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig973.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig973.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig973.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig973contigD-mesarthrocarpus_Contig973:5129..5695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010710.1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791125.7895904-CDS-D-mesarthrocarpus_Contig973:5128..54731680791125.7895904-CDS-D-mesarthrocarpus_Contig973:5128..5473Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig973 5129..5473 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791125.8019783-UTR-D-mesarthrocarpus_Contig973:5473..56951680791125.8019783-UTR-D-mesarthrocarpus_Contig973:5473..5695Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig973 5474..5695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig973.2.1prot_D-mesarthrocarpus_Contig973.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig973 5129..5473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig973.2.1

>prot_D-mesarthrocarpus_Contig973.2.1 ID=prot_D-mesarthrocarpus_Contig973.2.1|Name=mRNA_D-mesarthrocarpus_Contig973.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=115bp
MPNRALRMDVRQYTAGGSDGTNPAQILENSTRGSRDPDPRTRPDAKSTTV
ICDVVIEERDSRMSSIRQSKRRSSRVNATCTGHDQSILTITGEAGTETYR
FRKADCKLFRAFTHE
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mRNA from alignment at D-mesarthrocarpus_Contig973:5129..5695-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig973.2.1 ID=mRNA_D-mesarthrocarpus_Contig973.2.1|Name=mRNA_D-mesarthrocarpus_Contig973.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=567bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig973:5129..5695- (Discosporangium mesarthrocarpum MT17_79)
ATTGGCTCACAGCTGTAACAACGTCGGAGGCCCCAAGCTCAACAACTGTG
GTCTGGCTTGCCTCCTTTATTTTCCTTCCTGGCTTGTACCTATCCGGTTT
GCTGAGTATTTCTCCGTATTCATAGTTTCTGGAAAAATATCTTCTCAGGT
TTGAGGTGGTCGTGGGACCTAATCTTCTGCCTTGCTCTCTGCTACTTGGG
CACCTTTCATGCTTCTTGCTCGATGCCCAACCGAGCACTACGCATGGACG
TAAGACAGTACACAGCGGGGGGCAGTGATGGCACGAATCCTGCCCAGATA
CTTGAAAATAGCACCCGTGGAAGTCGTGACCCGGACCCACGGACCCGTCC
TGACGCAAAGTCTACAACCGTCATCTGTGATGTTGTGATTGAGGAGCGCG
ATTCACGAATGTCATCCATTCGACAGAGTAAACGTCGAAGTTCCCGAGTA
AACGCGACATGTACAGGGCACGACCAATCAATACTGACCATCACCGGCGA
GGCAGGGACGGAGACATACCGATTCCGGAAAGCCGACTGCAAGCTGTTTC
GTGCCTTCACCCACGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig973:5129..5695-

>mRNA_D-mesarthrocarpus_Contig973.2.1 ID=mRNA_D-mesarthrocarpus_Contig973.2.1|Name=mRNA_D-mesarthrocarpus_Contig973.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=345bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig973:5129..5695- (Discosporangium mesarthrocarpum MT17_79)
ATGCCCAACCGAGCACTACGCATGGACGTAAGACAGTACACAGCGGGGGG
CAGTGATGGCACGAATCCTGCCCAGATACTTGAAAATAGCACCCGTGGAA
GTCGTGACCCGGACCCACGGACCCGTCCTGACGCAAAGTCTACAACCGTC
ATCTGTGATGTTGTGATTGAGGAGCGCGATTCACGAATGTCATCCATTCG
ACAGAGTAAACGTCGAAGTTCCCGAGTAAACGCGACATGTACAGGGCACG
ACCAATCAATACTGACCATCACCGGCGAGGCAGGGACGGAGACATACCGA
TTCCGGAAAGCCGACTGCAAGCTGTTTCGTGCCTTCACCCACGAG
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