mRNA_D-mesarthrocarpus_Contig9721.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9721.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9721.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9721.1.1 vs. uniprot
Match: A0A812RVE1_9DINO (Aste57867_9460 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RVE1_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 3.000e-9
Identity = 47/142 (33.10%), Postives = 66/142 (46.48%), Query Frame = 1 
Query:   13 TTGIYMVRSRHNVLGASARILRVQMHTALSYISMLSMAGGMYAIYSLKNLNGKDHLTTWHSWWGIAAAGLMLAAWVVAMLNAVDVKAGGIKFLWVSRNHRWLGVAAYIASLGAATLGLHSTWAMATFGEVGVWALTANVVLM 438
            TT    +R R     A  ++L V  H   +   +   A G +AI+  KNL+GK H T+WHSW G+A     LA W++ +   +        + W    HR +G  A   SLGA   G+ S W  A  G    W LTA + L+
Sbjct:   55 TTACIAMRGRAPA--ALRKVLAVS-HGVTNIALVAVSAVGFWAIFQNKNLHGKAHFTSWHSWAGLAT----LALWLMNLALGLQRLVALGSWQWRHVLHRLVGTLAGTISLGAVVTGIWSQWGQAALGAHLQWILTALIGLV 189
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BLAST of mRNA_D-mesarthrocarpus_Contig9721.1.1 vs. uniprot
Match: UPI000C763EDB (cytochrome b561 domain-containing protein 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C763EDB)

HSP 1 Score: 55.8 bits (133), Expect = 2.090e-5
Identity = 36/126 (28.57%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:    7 LATTGIYMVRSRHNVLGASARILRVQMHTALSYISMLSMAGGMYAIYSLKNLNGKDHLTTWHSWWGIAAA-GLMLAA-WVVAMLNAVDVKAGGIKFLWVSRNHRWLGVAAYIASLGAATLGLHSTW 378
            L +  I +     ++L  SAR  ++Q+H  L+  +     GG  AIY  K + GK+H TTWH  +G+AA  G M+ A W +    +  +++  +K + +   H   G+  +   + A +L  +S W
Sbjct:   39 LLSQAIVLFSPESSLLLNSARSDKIQLHWILNLFAFFGTMGGFLAIYLNKEIAGKNHFTTWHGRFGLAAVIGTMITALWGLGAKYSSSLRSI-MKPINIKLYHATFGLIVFCLGMSAISLACYSNW 163
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9721.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A812RVE1_9DINO3.000e-933.10Aste57867_9460 protein n=1 Tax=Symbiodinium sp. KB... [more]
UPI000C763EDB2.090e-528.57cytochrome b561 domain-containing protein 2-like n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9721contigD-mesarthrocarpus_Contig9721:1739..3501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZP2
PFAMsCytochrom_B561
Model size1143
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons3
Evalue2.39e-39
EggNOG OGs2D0D3@1|root,2SDR0@2759|Eukaryota
Ec32 ortholog descriptioncytochrome b-561 domain protein
Ec32 orthologEc-08_001190.1
DescriptionEukaryotic cytochrome b561
Cds size492
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791125.2461295-UTR-D-mesarthrocarpus_Contig9721:1738..17651680791125.2461295-UTR-D-mesarthrocarpus_Contig9721:1738..1765Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9721 1739..1765 +
1680791125.3017104-UTR-D-mesarthrocarpus_Contig9721:2877..35011680791125.3017104-UTR-D-mesarthrocarpus_Contig9721:2877..3501Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9721 2878..3501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791125.2677126-CDS-D-mesarthrocarpus_Contig9721:1765..18221680791125.2677126-CDS-D-mesarthrocarpus_Contig9721:1765..1822Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9721 1766..1822 +
1680791125.2775688-CDS-D-mesarthrocarpus_Contig9721:2033..22601680791125.2775688-CDS-D-mesarthrocarpus_Contig9721:2033..2260Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9721 2034..2260 +
1680791125.287851-CDS-D-mesarthrocarpus_Contig9721:2669..28771680791125.287851-CDS-D-mesarthrocarpus_Contig9721:2669..2877Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9721 2670..2877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9721.1.1prot_D-mesarthrocarpus_Contig9721.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9721 1766..2877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9721.1.1

>prot_D-mesarthrocarpus_Contig9721.1.1 ID=prot_D-mesarthrocarpus_Contig9721.1.1|Name=mRNA_D-mesarthrocarpus_Contig9721.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=164bp
MVRSRHNVLGASARILRVQMHTALSYISMLSMAGGMYAIYSLKNLNGKDH
LTTWHSWWGIAAAGLMLAAWVVAMLNAVDVKAGGIKFLWVSRNHRWLGVA
AYIASLGAATLGLHSTWAMATFGEVGVWALTANVVLMGCGVVLSGLTRKG
ATSASAKKAGKGS*
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mRNA from alignment at D-mesarthrocarpus_Contig9721:1739..3501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9721.1.1 ID=mRNA_D-mesarthrocarpus_Contig9721.1.1|Name=mRNA_D-mesarthrocarpus_Contig9721.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1763bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9721:1739..3501+ (Discosporangium mesarthrocarpum MT17_79)
CTTGCATTGGCGACGACTGGGATTTACATGGTGCGGTCGAGACACAACGT
GCTCGGGGCCTCGGCAAGGATCTTGCGTGTACAGGTGACCCGAGCAAACG
TATGCAGTCGGAAGAGAAACAACAGATGTATTCAATACAATACTCATTTT
TGTGACCCTGCAGCATCCCCAAACGTTCCGCTGAAATCCACCTCAAACTT
AAACACCTCATTTCTCGTACTGCTGAGCGTAAGAAGTAGAGCTTAACCAC
TCACACTCCCCAAGTTCTCGGCCACCTTTCCCCAAACCCTTGTAGATGCA
CACTGCATTGAGCTATATATCAATGCTCTCGATGGCTGGAGGAATGTACG
CGATCTACTCTCTCAAAAACTTGAACGGCAAGGACCATCTCACCACCTGG
CACTCTTGGTGGGGAATCGCCGCGGCTGGACTCATGCTGGCAGCGTGGGT
TGTGGCGATGCTGAACGCTGTTGATGTGAAGGCTGGAGGAATCAAGTTTC
TCTGGGTGTCGAGAAATCACAGGTGCCTAGCGCAACCAAACCAAATGATA
CGCTAACATGCGTCTATCGTGAGAAACACTGGTACCCATGTTGCCTGTAA
CACAAGAAGGCTGCCCGTCCACGATCTTGTTATAGTGATATGTGTACAGG
TACATTAGATTTCTTACTCCATCATTTATACGTCCTGCTGTTGTGAAGGA
GGGGAAAAGTCTTTCTTGTCAACCACATCTTGACAAGAGACAACATTTAT
TTGAGCAACCTAGCTTGGGTGTGTCCGGGGGTAAACACGTTGTGCAACAT
TTAGGAACACAACGCGTAACGTGTGACATGTTTTTGGACTGTTGACACTA
ATGTAAAGCAACCGCTCTCAGCTCACACCACCCCATGCTGCTATGGCCCT
CCTGTCACTCCACCCGCCCCCCTGCTACAAGGTGGCTCGGCGTAGCTGCA
TACATCGCCAGCCTAGGAGCAGCCACCCTAGGACTGCACAGCACTTGGGC
CATGGCCACCTTTGGAGAGGTTGGGGTATGGGCGCTGACAGCAAACGTGG
TCCTCATGGGGTGTGGGGTGGTCCTTTCAGGGCTCACCAGGAAGGGGGCA
ACTTCAGCAAGTGCAAAAAAGGCAGGCAAGGGTAGTTAAGGAGTAAGTGG
GTGTGGACCATGCATGCTCTCTTTTTTTGCTCTAGGAAGGGGGACCTGCC
AAGGATAAAGAAAAGGCGGGGAAGTGTGGTGGGAATGGTAAAGGGGCATA
GCGTGGGTCACCGACACGCTTTGTTTTGAACACGGGCGCCTGGAGCAGTT
TTCGATTTAACTTGATGGCTTTCAAAATCTCCGCGCCCATATCTCTTTTA
GGGCTCTGTCGTAGAGGCCTCTTTGTCTACTTTCTGCGTTTCTGATCAAG
GGGTCCAATCAGAGAGGGCCTTGACAGCCTGTGTCGACAACCAAGCAGGG
GTAATCGGAGAGCTCCATCTCTCCCCCCACATGTCGTGATCCCCCTGTAA
TCCTTCCATATCTCTACCAACGGCACTGTACGTGCGACCGTGTGCCGGGT
GCTTCAAGGAATGCTGTGTGTCAAGCCATGCGGAGCGCTGGTAGTAAATA
TTTCGAAGCGTTGGTTGACCTTGGCTCCGAACCCAGACCAGGCCCGCTTC
TTTTTTTTATCTTTTTTTCTTGGTGCGGTTTTCGTTGAGCCAAGACTTGA
CAAAACTGCCCGTTTTTTTGGTGGCTGCGTTGAAGCACACAGTTTGTTTT
TTTTTTGGGGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9721:1739..3501+

>mRNA_D-mesarthrocarpus_Contig9721.1.1 ID=mRNA_D-mesarthrocarpus_Contig9721.1.1|Name=mRNA_D-mesarthrocarpus_Contig9721.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=492bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9721:1739..3501+ (Discosporangium mesarthrocarpum MT17_79)
ATGGTGCGGTCGAGACACAACGTGCTCGGGGCCTCGGCAAGGATCTTGCG
TGTACAGATGCACACTGCATTGAGCTATATATCAATGCTCTCGATGGCTG
GAGGAATGTACGCGATCTACTCTCTCAAAAACTTGAACGGCAAGGACCAT
CTCACCACCTGGCACTCTTGGTGGGGAATCGCCGCGGCTGGACTCATGCT
GGCAGCGTGGGTTGTGGCGATGCTGAACGCTGTTGATGTGAAGGCTGGAG
GAATCAAGTTTCTCTGGGTGTCGAGAAATCACAGGTGGCTCGGCGTAGCT
GCATACATCGCCAGCCTAGGAGCAGCCACCCTAGGACTGCACAGCACTTG
GGCCATGGCCACCTTTGGAGAGGTTGGGGTATGGGCGCTGACAGCAAACG
TGGTCCTCATGGGGTGTGGGGTGGTCCTTTCAGGGCTCACCAGGAAGGGG
GCAACTTCAGCAAGTGCAAAAAAGGCAGGCAAGGGTAGTTAA
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