mRNA_D-mesarthrocarpus_Contig972.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig972.7.1
Unique NamemRNA_D-mesarthrocarpus_Contig972.7.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig972.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig972contigD-mesarthrocarpus_Contig972:15089..16128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDL3
PFAMsPPR,PPR_2,PPR_3,RRM_1
Model size627
Max annot lvl2759|Eukaryota
KEGG koko:K08737,ko:K17710
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.03e-06
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size624
COG categoryS
BRITEko00000,ko00001,ko00002,ko03016,ko03029,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791125.039259-CDS-D-mesarthrocarpus_Contig972:15088..155371680791125.039259-CDS-D-mesarthrocarpus_Contig972:15088..15537Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig972 15089..15537 +
1680791125.0510857-CDS-D-mesarthrocarpus_Contig972:15952..161271680791125.0510857-CDS-D-mesarthrocarpus_Contig972:15952..16127Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig972 15953..16127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig972.7.1prot_D-mesarthrocarpus_Contig972.7.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig972 15089..16127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig972.7.1

>prot_D-mesarthrocarpus_Contig972.7.1 ID=prot_D-mesarthrocarpus_Contig972.7.1|Name=mRNA_D-mesarthrocarpus_Contig972.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=208bp
CFGCWWQLGKVDMRRSFAARLSMQGTRAKFPGPPTLNARQLLGVGNVGAQ
QSATRHGSFAIECRSHDARMAGPARYISSTTTMLKGRRGGSSALIQKDRH
GHRHAKKKSRKNEKAVGEHLWRIKEARRREAKAAREEEAIAALSSQERSR
LEQVAEEFLSSPVGHPDLGGWTHLLDKDPDALLAQLEKPPVAIKSALYEK
QKSGEGAG
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mRNA from alignment at D-mesarthrocarpus_Contig972:15089..16128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig972.7.1 ID=mRNA_D-mesarthrocarpus_Contig972.7.1|Name=mRNA_D-mesarthrocarpus_Contig972.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1040bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig972:15089..16128+ (Discosporangium mesarthrocarpum MT17_79)
TGCTTTGGCTGCTGGTGGCAGCTTGGCAAGGTTGACATGCGTCGTTCCTT
CGCTGCACGATTGTCCATGCAAGGTACTAGAGCCAAGTTTCCCGGACCGC
CTACCCTCAATGCGCGGCAACTCCTTGGTGTGGGTAATGTTGGGGCTCAA
CAAAGCGCCACCAGACATGGATCCTTCGCGATTGAATGTCGGTCACACGA
CGCTCGAATGGCGGGGCCTGCGAGGTACATATCCTCGACAACTACCATGT
TAAAGGGTCGTAGGGGGGGTTCATCTGCCCTCATCCAGAAAGATAGACAC
GGACATCGGCATGCAAAGAAGAAGAGCCGAAAAAACGAGAAGGCCGTGGG
CGAGCACCTCTGGCGTATCAAGGAAGCAAGGCGTCGAGAAGCCAAGGCGG
CGAGGGAAGAGGAGGCCATTGCAGCCTTGTCTTCTCAGGAGCGTTCAAGG
TGGGTAGGGGAAGGAATACTTGTGGGCAAGGTTTGGCTGGAACCGGGACG
GATTAGACTGAAAGAGCCTCTCTCGAACTGATGATGTGCTGTCAAGATAC
TTCCAGGAGTAAAGAGCTGAAGACCAAACGTGGAATTCCTCCGTCAGGGT
ACATATTTACCAGCTTCATGGAAAGATGATAAGATGCTTCAACAGGAGTT
GTACATGATGCCTTCAGTATGCCACTGCCTATGTTAACAGGCATCATCGC
CTAGCTGAGCAGTCCCCGTTTGATGCAAGTTCTCCCACCGCTGGTTGCTA
CTAAGTGCAGCCAAATCACCCTCCACCCCCCTCAAAAAGCATAAACAAGA
ATCTGAACACCACGGTTTACATGCCCCTCTCGCTTTCCCACCATTCTGTT
GTGGCCATCATCAGGCTGGAACAGGTGGCAGAGGAGTTCCTCAGCTCTCC
CGTTGGGCACCCGGACCTTGGCGGGTGGACCCATCTGCTGGATAAGGATC
CCGACGCCCTTCTCGCTCAGCTCGAAAAGCCCCCAGTGGCGATCAAGAGT
GCCTTGTACGAGAAGCAAAAATCCGGGGAAGGGGCAGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig972:15089..16128+

>mRNA_D-mesarthrocarpus_Contig972.7.1 ID=mRNA_D-mesarthrocarpus_Contig972.7.1|Name=mRNA_D-mesarthrocarpus_Contig972.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=624bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig972:15089..16128+ (Discosporangium mesarthrocarpum MT17_79)
TGCTTTGGCTGCTGGTGGCAGCTTGGCAAGGTTGACATGCGTCGTTCCTT
CGCTGCACGATTGTCCATGCAAGGTACTAGAGCCAAGTTTCCCGGACCGC
CTACCCTCAATGCGCGGCAACTCCTTGGTGTGGGTAATGTTGGGGCTCAA
CAAAGCGCCACCAGACATGGATCCTTCGCGATTGAATGTCGGTCACACGA
CGCTCGAATGGCGGGGCCTGCGAGGTACATATCCTCGACAACTACCATGT
TAAAGGGTCGTAGGGGGGGTTCATCTGCCCTCATCCAGAAAGATAGACAC
GGACATCGGCATGCAAAGAAGAAGAGCCGAAAAAACGAGAAGGCCGTGGG
CGAGCACCTCTGGCGTATCAAGGAAGCAAGGCGTCGAGAAGCCAAGGCGG
CGAGGGAAGAGGAGGCCATTGCAGCCTTGTCTTCTCAGGAGCGTTCAAGG
CTGGAACAGGTGGCAGAGGAGTTCCTCAGCTCTCCCGTTGGGCACCCGGA
CCTTGGCGGGTGGACCCATCTGCTGGATAAGGATCCCGACGCCCTTCTCG
CTCAGCTCGAAAAGCCCCCAGTGGCGATCAAGAGTGCCTTGTACGAGAAG
CAAAAATCCGGGGAAGGGGCAGGG
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