mRNA_D-mesarthrocarpus_Contig972.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig972.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig972.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig972.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig972contigD-mesarthrocarpus_Contig972:7621..9843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog9778.XP_004390851.1
Preferred nameNOTCH4
PFAMsAnk,Ank_2,Ank_5,EGF,EGF_CA,NOD,NODP,Notch,hEGF
Model size1154
Max annot lvl33208|Metazoa
KEGG koko:K20996
KEGG Pathwayko01522,ko04320,ko04330,ko04919,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04919,map05165,map05200,map05206,map05224
KEGG ModuleM00682
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0000902,GO:0000904,GO:0001525,GO:0001568,GO:0001569,GO:0001709,GO:0001763,GO:0001885,GO:0001886,GO:0001944,GO:0002009,GO:0002064,GO:0002376,GO:0002520,GO:0003158,GO:0003382,GO:0003674,GO:0005102,GO:0005112,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0008150,GO:0008152,GO:0008593,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009986,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022603,GO:0023051,GO:0023052,GO:0023057,GO:0030097,GO:0030154,GO:0030162,GO:0030855,GO:0030856,GO:0030857,GO:0030879,GO:0031090,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032774,GO:0032879,GO:0032880,GO:0032989,GO:0034641,GO:0034645,GO:0034654,GO:0035239,GO:0035295,GO:0038023,GO:0042175,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045165,GO:0045446,GO:0045595,GO:0045596,GO:0045601,GO:0045602,GO:0045746,GO:0045765,GO:0045766,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0046982,GO:0046983,GO:0048468,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048646,GO:0048729,GO:0048731,GO:0048732,GO:0048754,GO:0048845,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051254,GO:0051716,GO:0060089,GO:0060255,GO:0060429,GO:0060562,GO:0060841,GO:0061138,GO:0065007,GO:0070013,GO:0070613,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080090,GO:0090304,GO:0097659,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:1901342,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903317,GO:1903506,GO:1903508,GO:1903847,GO:1903849,GO:1904018,GO:1905651,GO:1905653,GO:2000026,GO:2000112,GO:2001141
Exons2
Evalue0.000289
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota,39Y8J@33154|Opisthokonta,3BNYU@33208|Metazoa,3D5ZW@33213|Bilateria,489IG@7711|Chordata,497TI@7742|Vertebrata,3J6BU@40674|Mammalia,34XW1@311790|Afrotheria
DescriptionNeurogenic locus notch homolog protein 4
Cds size999
COG categoryT
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.8628078-CDS-D-mesarthrocarpus_Contig972:7620..86191680791124.8628078-CDS-D-mesarthrocarpus_Contig972:7620..8619Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig972 7621..8619 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.8769329-UTR-D-mesarthrocarpus_Contig972:8619..86731680791124.8769329-UTR-D-mesarthrocarpus_Contig972:8619..8673Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig972 8620..8673 -
1680791124.8869023-UTR-D-mesarthrocarpus_Contig972:9742..98431680791124.8869023-UTR-D-mesarthrocarpus_Contig972:9742..9843Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig972 9743..9843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig972.4.1prot_D-mesarthrocarpus_Contig972.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig972 7621..8619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig972.4.1

>prot_D-mesarthrocarpus_Contig972.4.1 ID=prot_D-mesarthrocarpus_Contig972.4.1|Name=mRNA_D-mesarthrocarpus_Contig972.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=333bp
MFRLQDHPPGSGMWQAVISLISALTTALAITAAELLIGVISLQALKHPRN
DPEPVYREFDDEEPVTMMRMVVRTRTKISPLDLFKTWHNVAIHCVAMAIV
AFATSRCSNRLATRWWARRIVRRGNPCCAQTLIKAVATADLPTVQALLRA
RASPRAALDDEQKGPLHHAACTCSPRAVAIVNSLLEAGADPNQQDQWGRT
PLHYASRTRMRMPPVKRTTVRKRRKPRGWGQGWGWWGGGGGGAIDGGSGA
VTGALLHGGAATGIRGQDGMTALHHAAHKGVVGAVLELVAAGADLEVPDN
YGATALHSACYMLNAGCVELLLRGGADEKAVYG
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mRNA from alignment at D-mesarthrocarpus_Contig972:7621..9843-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig972.4.1 ID=mRNA_D-mesarthrocarpus_Contig972.4.1|Name=mRNA_D-mesarthrocarpus_Contig972.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2223bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig972:7621..9843- (Discosporangium mesarthrocarpum MT17_79)
CTTTCCCATCAGTGATACCCGAAGGTCGGGTATGAGTTCCTCGTCGTCGG
TTGGAAACTAGCGACGAGATGGCTAGGTACTCGAGCAACTGAGTCTGAAA
GGTACGCTTTAACAAGAGATGAACGGCAGAAGACCCTTACCTAAGTTTTC
CTATCTTTCACCTCATGAGTGTCCGAACCATTTCGTGTTCACTGTCTATA
TCACGGTGTACGTCCTGCGTCCCTGTGACCTATGATCTCTGTCCTTACCC
AACTCCGACTCCAATATTCTTCGCTCTGCGGCTGTATCTCCGTGCCCAGT
GATTGACCCCAAATAACCCACTCATACCTACTCCGTCTTGGGAAATGATT
CGCATGCATCATGATAAGCCTGAGTATTCTTTCGCACTCTCCCTGCCTTG
CTGGTACATTCAAGTTGTACTGTACCAGATCCTGATCCTGGATACTATGT
ATCATCAATACCCATCGACGAAAACAACACCAGTGTAGAAATGACCTCAT
GCCGGGCATTTCTCACTGCCCCCCACTCATTATACATATCTAATTGGCAC
TCATGGGCCTGCTTTGGCGTTTCCTTGTTACGCCTATATCGTGATCTTTG
TCGCAACGGCCATATCTTTCACCTGCCCACCCCACCAAATGTCCTGTGTC
ATTTCGCTTTGCGAGGGCAAATCTTGTTGGCATCACCTTTCTCCTTCTCC
GATACTGCTGTGCTCGAGTATGCACCATCTGCTCAATTTTATAATCCACG
AAGCTCCACGCTACGTGTTTCTTCATTACTTGTGCTTCGAGCATGTCTTT
CACGTATTGTCGCAGCTTCAGGCTGACCCGGGTGTTGGAGATATTTGTTA
CTAATCGGACCACATCGATGATTTCCCTGATGCATGGGATACTACCTATC
TGCCGACAAGCTTACCAGGCCATTCCTTATGTGTCACTGGTCCACCTGGC
ACAAGCTTCTCCTTGTCCTTTTGCTTGGTGGATTCTCTTAACATTCGGTA
GTTGGTAGCTTTATTCGTCCCCAGTTTCCCAGAATCTCATACGTCGGACA
TTTTCCCACCTCCACCAGTCCCCAGTGGATCCAAGCAGGTATCACATCCC
TTGGTATGAGTTCTCATTTCTAACCATCACTAGACAACCCCCTCCCACTC
CCGCCCCCTTGCCTCTGTAGGTGGGTTCGCTTGAAAAATAGGAGTGGGGA
GACGACAGAACAATCAATTATCTCATGTTCAGGTTACAAGATCACCCTCC
GGGTAGCGGGATGTGGCAGGCCGTTATCTCCCTCATCTCTGCCCTCACCA
CTGCGCTAGCGATCACGGCGGCCGAGCTCCTCATAGGTGTCATATCCCTC
CAGGCCCTGAAGCACCCCCGCAACGACCCTGAGCCCGTGTACCGCGAGTT
CGATGACGAGGAGCCCGTGACCATGATGAGGATGGTGGTACGGACAAGGA
CCAAGATCTCCCCCCTGGACCTCTTCAAGACCTGGCACAATGTTGCCATC
CATTGTGTGGCTATGGCTATTGTCGCCTTTGCCACGTCCCGCTGCTCCAA
CCGGCTTGCCACGCGCTGGTGGGCCCGCCGCATCGTCCGCCGGGGAAATC
CCTGCTGTGCCCAGACCCTGATCAAGGCTGTCGCCACCGCCGACCTGCCC
ACTGTCCAGGCCCTCCTCAGGGCCAGGGCATCACCCCGGGCTGCCCTGGA
CGACGAGCAGAAGGGCCCCCTCCACCACGCTGCCTGCACATGCAGCCCCA
GAGCCGTAGCCATCGTGAACTCCCTCCTGGAGGCCGGCGCTGACCCTAAC
CAGCAAGACCAGTGGGGTAGGACCCCCCTCCACTACGCCTCGAGGACCCG
GATGAGGATGCCCCCAGTGAAAAGGACCACTGTGAGGAAGAGACGGAAGC
CCCGGGGCTGGGGCCAGGGCTGGGGCTGGTGGGGGGGCGGTGGCGGGGGT
GCCATTGATGGTGGCTCTGGGGCGGTCACAGGGGCCCTGCTCCATGGCGG
GGCGGCCACTGGGATACGGGGCCAGGATGGGATGACGGCGCTGCATCACG
CCGCGCACAAGGGAGTGGTCGGGGCAGTGCTGGAGCTGGTGGCAGCGGGG
GCTGACCTAGAGGTGCCAGACAACTACGGGGCAACTGCTCTCCACAGTGC
CTGCTACATGCTCAATGCAGGCTGCGTGGAGCTGCTGCTGCGTGGGGGGG
CGGACGAGAAGGCTGTGTACGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig972:7621..9843-

>mRNA_D-mesarthrocarpus_Contig972.4.1 ID=mRNA_D-mesarthrocarpus_Contig972.4.1|Name=mRNA_D-mesarthrocarpus_Contig972.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=999bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig972:7621..9843- (Discosporangium mesarthrocarpum MT17_79)
ATGTTCAGGTTACAAGATCACCCTCCGGGTAGCGGGATGTGGCAGGCCGT
TATCTCCCTCATCTCTGCCCTCACCACTGCGCTAGCGATCACGGCGGCCG
AGCTCCTCATAGGTGTCATATCCCTCCAGGCCCTGAAGCACCCCCGCAAC
GACCCTGAGCCCGTGTACCGCGAGTTCGATGACGAGGAGCCCGTGACCAT
GATGAGGATGGTGGTACGGACAAGGACCAAGATCTCCCCCCTGGACCTCT
TCAAGACCTGGCACAATGTTGCCATCCATTGTGTGGCTATGGCTATTGTC
GCCTTTGCCACGTCCCGCTGCTCCAACCGGCTTGCCACGCGCTGGTGGGC
CCGCCGCATCGTCCGCCGGGGAAATCCCTGCTGTGCCCAGACCCTGATCA
AGGCTGTCGCCACCGCCGACCTGCCCACTGTCCAGGCCCTCCTCAGGGCC
AGGGCATCACCCCGGGCTGCCCTGGACGACGAGCAGAAGGGCCCCCTCCA
CCACGCTGCCTGCACATGCAGCCCCAGAGCCGTAGCCATCGTGAACTCCC
TCCTGGAGGCCGGCGCTGACCCTAACCAGCAAGACCAGTGGGGTAGGACC
CCCCTCCACTACGCCTCGAGGACCCGGATGAGGATGCCCCCAGTGAAAAG
GACCACTGTGAGGAAGAGACGGAAGCCCCGGGGCTGGGGCCAGGGCTGGG
GCTGGTGGGGGGGCGGTGGCGGGGGTGCCATTGATGGTGGCTCTGGGGCG
GTCACAGGGGCCCTGCTCCATGGCGGGGCGGCCACTGGGATACGGGGCCA
GGATGGGATGACGGCGCTGCATCACGCCGCGCACAAGGGAGTGGTCGGGG
CAGTGCTGGAGCTGGTGGCAGCGGGGGCTGACCTAGAGGTGCCAGACAAC
TACGGGGCAACTGCTCTCCACAGTGCCTGCTACATGCTCAATGCAGGCTG
CGTGGAGCTGCTGCTGCGTGGGGGGGCGGACGAGAAGGCTGTGTACGGG
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