mRNA_D-mesarthrocarpus_Contig9715.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9715.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9715.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: A0A835YRZ2_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.430e-32
Identity = 62/126 (49.21%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   79 ITAGVAAAVGAIWHFKEQEVRALYRDSVLDRVVNWVM-----MAKPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHGGFAD 441
            +T  V       W     ++ ALYR S L     WV      +A+PFT+PS +KL+PDWPP + PPD PCPPTLVLDLE TLV   + R+ GWR A+RPG++ FL+EM   YEIV+FT +H G A+
Sbjct:   91 VTLAVIGGGALAWRLWHDDIAALYRRSPLHAAGRWVNAQLAEIARPFTEPSSDKLLPDWPPSELPPDTPCPPTLVLDLENTLVHMDWHRRTGWRVARRPGVEEFLREMSMYYEIVIFTSAHVGSAE 216          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: D8LBI3_ECTSI (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.510e-29
Identity = 70/131 (53.44%), Postives = 84/131 (64.12%), Query Frame = 1
Query:   64 GKGLLITAGVA---AAVGAIWHFKEQEVRALYRDSVLDRVVNWVMMAKP-FTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHGGFADQ 444
            G G  + AG +   AA+G  W  K  E+R L  DS +D    W M     ++ P ++KL+ D P    PP    PPTLVLDLEGTL+ + Y+RK GWR AKRPGLDAFLKEM QLYEIVVFTDS GG AD+
Sbjct:  170 GWGTKLVAGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWALYSSPVKDKLLLDCP---LPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADE 297          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: A0A8K1FDJ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDJ8_PYTOL)

HSP 1 Score: 113 bits (283), Expect = 3.120e-27
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  190 MAKPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHGGFADQ 444
            +AKP+T+PS+EKL+PDWP PQ PPD P  P LVLDLE TLV S++SRK+GWR AKRPG+D FL+ + Q YEIVVF+ +H   A++
Sbjct:  139 LAKPYTEPSKEKLLPDWPIPQVPPDTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLEALAQYYEIVVFSQNHMYMAEE 223          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: A0A7S1BYC3_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYC3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.980e-26
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  181 WVMMAKPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHGGFAD 441
            W    + FT P  +KL+PDWP P  PPD+PCP TLVLDLE TLV+S + RK+GWR AKRPG+D FL++M Q YEIV++T +  G A+
Sbjct:  145 WDNATEGFTKPHADKLLPDWPMPNVPPDLPCPHTLVLDLENTLVSSTWDRKHGWRHAKRPGVDQFLRKMAQYYEIVLYTSTIQGVAE 231          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: TIM50_PHYIN (Mitochondrial import inner membrane translocase subunit TIM50 n=20 Tax=Phytophthora TaxID=4783 RepID=TIM50_PHYIN)

HSP 1 Score: 110 bits (274), Expect = 9.680e-26
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  196 KPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHG 429
            KPFTDPSR+KL+PDWP PQ P D P  P LVLDLE TLV S++SRK+GWR AKRPG+D FL+ + Q YEIV+F+ ++G
Sbjct:  142 KPFTDPSRQKLLPDWPIPQVPADTPTVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG 219          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: M4C535_HYAAE (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C535_HYAAE)

HSP 1 Score: 109 bits (273), Expect = 9.960e-26
Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   76 LITAGVAAAVGAIWHFK-EQEVRALYRDSV----LDRVVNWVMM-----AKPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHG 429
            L+  G++ ++  +WHF  +++++   R+++    L  V  +V        KPFTDPSR+KL+PDWP PQ P D P  P LV+DLE TLV S++SRK+GWR AKRPG+D FL+ + Q YEIV+F+ ++G
Sbjct:   93 LLAGGISGSI--LWHFVLDEQLKRRIRETLGATFLGDVYVFVSKKVEETVKPFTDPSRQKLLPDWPIPQVPADTPPVPVLVVDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG 218          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: A0A024GKE5_9STRA (Uncharacterized protein n=13 Tax=Albugo candida TaxID=65357 RepID=A0A024GKE5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.110e-25
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  145 LYRDSVLDRVVNWVMMAKPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSH 426
            LYR S  D++ +W+   +P TDPSR KL+PDWP PQ PP+ P  P LVLDLE TLV S++SRK+GWR AKRPG+D FL+ + Q YEIV+F++++
Sbjct:  946 LYRYSA-DKIADWI---RPITDPSRSKLLPDWPIPQVPPNTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQFYEIVIFSENY 1035          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: A0A3M6VUC8_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUC8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.330e-25
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  112 IWHFK-----EQEVRALYRDSVLDRVVNWVMM-----AKPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHG 429
            +WHF      +  ++A    + L  V  +V        KPFTDPSR+KL+PDWP PQ P + P  P LVLDLE TLV S++SRK+GWR AKRPG+D FL+ + Q YEIV+F+ ++G
Sbjct:  100 LWHFMLDDSIKSRIKATLGATFLGDVYGFVARKVQETVKPFTDPSRQKLLPDWPIPQVPANTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG 215          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: A0A3R7KV46_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KV46_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.350e-25
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  112 IWHFKEQEVRALYRDSVLDRVVN--WVMMAK-------PFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHG 429
            +WHF +  +++    ++    +   +V +AK       PFTDPSR KL+PDWP PQ P D P  P LVLDLE TLV S++SRK+GWR AKRPG+D FL+ + Q YEIV+F+ ++G
Sbjct:  102 LWHFLDDGIKSKVTGALSSTFLGDVYVFVAKKVEETVKPFTDPSRLKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG 216          
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Match: A0A0P1A8K0_PLAHL (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8K0_PLAHL)

HSP 1 Score: 109 bits (272), Expect = 1.400e-25
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  196 KPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLEGTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHG 429
            KPFTDPSR+KL+PDWP PQ P D P  P LVLDLE TLV S++SRK+GWR AKRPG+D FL+ + Q YEIV+F+ ++G
Sbjct:  142 KPFTDPSRQKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG 219          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9715.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRZ2_9STRA1.430e-3249.21Mitochondrial import inner membrane translocase su... [more]
D8LBI3_ECTSI3.510e-2953.44Mitochondrial import inner membrane translocase su... [more]
A0A8K1FDJ8_PYTOL3.120e-2762.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1BYC3_9STRA7.980e-2657.47Mitochondrial import inner membrane translocase su... [more]
TIM50_PHYIN9.680e-2665.38Mitochondrial import inner membrane translocase su... [more]
M4C535_HYAAE9.960e-2646.09Mitochondrial import inner membrane translocase su... [more]
A0A024GKE5_9STRA1.110e-2557.45Uncharacterized protein n=13 Tax=Albugo candida Ta... [more]
A0A3M6VUC8_9STRA1.330e-2549.14Mitochondrial import inner membrane translocase su... [more]
A0A3R7KV46_9STRA1.350e-2548.70Mitochondrial import inner membrane translocase su... [more]
A0A0P1A8K0_PLAHL1.400e-2565.38Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9715contigD-mesarthrocarpus_Contig9715:368..1645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBI3
Preferred nameTIMM50
PFAMsNIF
Model size444
Max annot lvl2759|Eukaryota
KEGG koko:K17496
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
Exons3
Evalue5.76e-30
EggNOG OGsCOG5190@1|root,KOG2832@2759|Eukaryota
Descriptionprotein import into mitochondrial matrix
Cds size444
COG categoryK
BRITEko00000,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.413012-CDS-D-mesarthrocarpus_Contig9715:367..4731680791124.413012-CDS-D-mesarthrocarpus_Contig9715:367..473Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9715 368..473 -
1680791124.4336188-CDS-D-mesarthrocarpus_Contig9715:934..10831680791124.4336188-CDS-D-mesarthrocarpus_Contig9715:934..1083Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9715 935..1083 -
1680791124.4461415-CDS-D-mesarthrocarpus_Contig9715:1456..16451680791124.4461415-CDS-D-mesarthrocarpus_Contig9715:1456..1645Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9715 1457..1645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9715.1.1prot_D-mesarthrocarpus_Contig9715.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9715 368..1645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9715.1.1

>prot_D-mesarthrocarpus_Contig9715.1.1 ID=prot_D-mesarthrocarpus_Contig9715.1.1|Name=mRNA_D-mesarthrocarpus_Contig9715.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=148bp
AGAGNSGGGLEGAARSSKSRMGKGLLITAGVAAAVGAIWHFKEQEVRALY
RDSVLDRVVNWVMMAKPFTDPSREKLMPDWPPPQAPPDIPCPPTLVLDLE
GTLVASQYSRKNGWRTAKRPGLDAFLKEMHQLYEIVVFTDSHGGFADQ
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mRNA from alignment at D-mesarthrocarpus_Contig9715:368..1645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9715.1.1 ID=mRNA_D-mesarthrocarpus_Contig9715.1.1|Name=mRNA_D-mesarthrocarpus_Contig9715.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1278bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9715:368..1645- (Discosporangium mesarthrocarpum MT17_79)
GCTGGTGCAGGGAATTCTGGTGGTGGGTTGGAAGGTGCAGCACGGAGCTC GAAGAGTCGGATGGGCAAAGGCTTGTTGATTACGGCTGGGGTTGCTGCGG CTGTGGGGGCAATATGGCACTTCAAGGAGCAGGAAGTGAGGGCACTATAT CGCGACAGTGTCTTGGACAGGGTCGTCAACTGGGTCATGGTCCAGATTGG CACGGTAAGGCTGGTGGAAGAGGCTAAGAAAAGGTTTGCACATTGAATTA TTGGAAACTACGTCATTGAATTATTTTGATGTACTTCGATTTATGAACGG AAGATTAACCGTGTCTGTGATGGCCGTGGACTTTCAAGGTGCCATTCCCA CAACTCCAGTACACACACCTCTCGAAAATATTGCAGGTGCAGTGTGTGTT TCGCGGACCATATCCACTGTCCCCAGAAGCCCTTTGTCGCTTCAAACGAT AGGATCAGCCCTGTTGGCCTGTGATGGCTACTAATTCATCATCCCCCATC CCCGCCCATCCATGGGTGTCATGCCAAACTGTTACTGCGCACCCTTCCCG TCCGTCTCAAAGATGGCCAAGCCATTCACAGATCCAAGCCGTGAGAAATT GATGCCTGATTGGCCACCGCCACAGGCACCGCCGGACATTCCTTGCCCTC CAACACTGGTGCTTGACTTGGAGGGGACTCTCGTGGCTTCACAATATAGT CGAAAAAATGGGTGAGTGGAAATTTCTCGTGTGGAGGGGAACGGCTTGTC CTTCCAGTGCCTTCAGAGATGAACTTTTGTTTTGAGGGGCAAGCGGTGGT TCTGAAAAGTTGTATGCTTCCGTCAACAAGAAAGGTGTGGGCCTTGCTCA TTGAAATGCTATCCACAGACAGGCGCTTGCTCCTTTGCATTAATTATTCG AGCCTATGATCGTAGGTCCCGAGAATTCGATCGAATTATGGACAATTCAG ATAAGCTTCAGCTTCTAGTTCATGCAAGGACTCCTCCCTCCGTTGGGTAT GCTTCTTGTCTTGTTTGCATTCGTTGAAAGGTCAGATCTTGTGCTATTTG TCATGTGTGTGCAAGAGAGAGAGACACGTCAACACAGCATGTACACAGTG GTCATGACTCCTGCGTGCCCACCATACCACAACGCCACATGTTTGGACAC CGTGCCCCCTCTCATTCCTCAGGTGGCGCACAGCAAAGCGTCCTGGGCTT GATGCTTTCCTCAAGGAAATGCACCAGCTCTATGAGATTGTGGTTTTTAC TGACAGCCATGGGGGCTTTGCTGACCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9715:368..1645-

>mRNA_D-mesarthrocarpus_Contig9715.1.1 ID=mRNA_D-mesarthrocarpus_Contig9715.1.1|Name=mRNA_D-mesarthrocarpus_Contig9715.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=444bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9715:368..1645- (Discosporangium mesarthrocarpum MT17_79)
GCTGGTGCAGGGAATTCTGGTGGTGGGTTGGAAGGTGCAGCACGGAGCTC
GAAGAGTCGGATGGGCAAAGGCTTGTTGATTACGGCTGGGGTTGCTGCGG
CTGTGGGGGCAATATGGCACTTCAAGGAGCAGGAAGTGAGGGCACTATAT
CGCGACAGTGTCTTGGACAGGGTCGTCAACTGGGTCATGATGGCCAAGCC
ATTCACAGATCCAAGCCGTGAGAAATTGATGCCTGATTGGCCACCGCCAC
AGGCACCGCCGGACATTCCTTGCCCTCCAACACTGGTGCTTGACTTGGAG
GGGACTCTCGTGGCTTCACAATATAGTCGAAAAAATGGGTGGCGCACAGC
AAAGCGTCCTGGGCTTGATGCTTTCCTCAAGGAAATGCACCAGCTCTATG
AGATTGTGGTTTTTACTGACAGCCATGGGGGCTTTGCTGACCAG
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