mRNA_D-mesarthrocarpus_Contig9712.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9712.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9712.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9712.2.1 vs. uniprot
Match: D7FJS5_ECTSI (Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS5_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 2.580e-52
Identity = 155/487 (31.83%), Postives = 225/487 (46.20%), Query Frame = 2 
Query:  395 LPENSSPAEIAVVWPLNDTVIPAAEKRIVFNTRGFKVSAEQPLEIRMPENDDFVRYFEQDLSEIILRGGTIGSHLVNLASHLHPERVETAVFFSTILTPEEIRLRRFLVPP-----------CPGYDVDDVNGAVYNNVEKG--TRWTTRTSDRRERTGSKAPHLKLNF--SPGADFGAKTNEGMEQSAGVTIQAKTNEHLKDPIGAGAHRQPIRLCFVGSWKAGIDGQKEIWLQEMERLPQDRFSATYLTFQAEEDLPGNKGPAEKAAPPTTTASQLALEQRLRAAGVRVIRAPIPPVSLAEIEAGRTACGGENYRGGGGVCDGXXXXXXXXXVEGSEPQQQPHPPDPEALFRAILESLDRAGSKLALMHPPWARRVLEHIIGALGKARPDVLVLGNTRSLGDAVLTRAARLMVPRGDGNGGHSHLRVVVELPNIDPHPEIDADLLVAPSHYVARHEGTQALAREVGAGVVVIPPGVDMRSLLHPA 1810
            LP  +  A + +  PLNDT++P  +  + F T GF  + E P+E+ MP+N D     E+  S +IL      +  V L + +  ERV  +V FST+L  E I   R  +P            CP    +   G    ++ KG  + W T         G    +       S G D G +T EG+ +                         PI L FVGS    +DGQK +WLQ++E+  + RF+  +LTF+ +E   G+   A K     + A++ + +QRL  AGV ++   +P V+ + I     + GG                           Q  P     E  F+A+LES+ RAG    LM PPW   + +HI  A+  A PDVLV+ N ++LGD +LT+AAR  +    G       ++V++ PNI P   +D D++  PSHYVARH  T+ALA   GA VVVIPPGV +   L  A
Sbjct:   99 LPTKNDTAALWITRPLNDTILPLGDIFLTFETHGFTPAVETPIEVLMPQNGDTPFLLEKGNS-MILSSDMPCTQQVTLYATVRGERVSASVLFSTVLGREAILSARTPLPSGAAWGRPRLMVCPPLVREHEEGYNSASLPKGDTSTWQTHEGGTGVMVGKGGVYCSSGSAESQGCDSGEETTEGLPR-------------------------PISLVFVGS--LSLDGQKHVWLQQLEQFSRVRFAPKFLTFEEQEGRNGSTAGAWK-----SNAAE-SFKQRLSRAGVPLVTVRLPQVNSSWIH---DSIGG---------------------------QVAPTHTLKEMAFKAVLESIHRAGGNPHLMSPPWTGEIFQHIADAVESASPDVLVIANGKTLGDDLLTKAARWAMRDNSG------FKIVMDFPNIGPALGVDVDVIATPSHYVARHRDTKALAAAAGAEVVVIPPGVPVAPTLSQA 515
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BLAST of mRNA_D-mesarthrocarpus_Contig9712.2.1 vs. uniprot
Match: A0A6H5K6W1_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W1_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.950e-51
Identity = 154/495 (31.11%), Postives = 225/495 (45.45%), Query Frame = 2 
Query:  395 LPENSSPAEIAVVWPLNDTVIPAAEKRIVFNTRGFKVSAEQPLEIRMPENDDF------------VRYFEQDLSEIILRGGTIGSHLVNLASHLHPERVETAVFFSTILTPEEIRLRRFLVPP-----------CPGYDVDDVNGAVYNNVEKGTRWTTRTSDRRERTGSKAPHLKLNFSPGADFGAKTNEGMEQSAGVTIQAKTNEHLKDPIGAGAHRQPIRLCFVGSWKAGIDGQKEIWLQEMERLPQDRFSATYLTFQAEEDLPGNKGPAEKAAPPTTTASQLALEQRLRAAGVRVIRAPIPPVSLAEIEAGRTACGGENYRGGGGVCDGXXXXXXXXXVEGSEPQQQPHPPDPEALFRAILESLDRAGSKLALMHPPWARRVLEHIIGALGKARPDVLVLGNTRSLGDAVLTRAARLMVPRGDGNGGHSHLRVVVELPNIDPHPEIDADLLVAPSHYVARHEGTQALAREVGAGVVVIPPGVDMRSLLHPA 1810
            LP  +  A I +  PLNDT++P  +  + F T GF  + E P+E  M     F              +  +  + IIL      +  V L + +  ERV  +V FST+L  E I   R  +P            CP    +   G ++ ++ KG + T +T +    T        L  S G+    + + G E   G+                    +PI L +VGS    +DGQK IWLQ++E+LP+ RF+A +LTF+ +E   G+   A K     T A++ + +QRL  AGV ++   +P V+ +                                +  +  +Q P     E  FR +LES  RAG    +M P W   + +HI  A+  A PDVLV+ N ++LGD VLT+AAR  +    G       ++V++ PNI P   +D D++  PSHYVARH  TQALA   GA VVVIPPGV + S L  A
Sbjct:   79 LPTKNDTAAIWITRPLNDTILPLGDVFLTFETHGFTPAVETPIEASMSRGATFRFSSVLTSQNGDTPFLLEKGNSIILSSDIPCTQQVTLYATVRGERVSASVLFSTVLGREAILSARTPLPSGVVWGRPRSMVCPPLIREHKKGDIFASLPKGDKSTWQTHE--GGTDVMVGKGGLCCSSGSAESQRCDSGEEAIEGLP-------------------RPISLVYVGS--LSLDGQKHIWLQQLEQLPRVRFAAKFLTFEEQEGTRGSTAGAWK-----TNAAE-SFKQRLSRAGVPLVTVRLPQVNSS-------------------------------WIHDTIGRQAPTNTLKEMAFRTVLESFHRAGGNPHVMSPQWTGEIFQHIADAVQSASPDVLVMANGKTLGDDVLTKAARWAMRDNSG------FKIVMDFPNIGPSLGVDVDVIATPSHYVARHPDTQALAAAAGAEVVVIPPGVPVASPLSQA 507
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BLAST of mRNA_D-mesarthrocarpus_Contig9712.2.1 vs. uniprot
Match: A0A2R5G895_9STRA (GDP-mannose-dependent alpha-mannosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G895_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.810e-5
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 2 
Query: 1397 EALFRAILESLDRAGSKLALMHPPWARRVLEHIIGALGKARPDVLVLGNTRSLGDAVLTRAARLMVPRGDGNGGHSHLRVVVELPNIDPHPEIDADLLVAPSHYVARHEGTQALAREVGAGVVVIPPGVDM 1789
            EA FR I      A    A M    +  ++  ++GA   A  D+L   N++   D +L   ARL      G G     R++++LPN DPHPEI  D++VAPS    R    + LA   GA +V+ P G D+
Sbjct:   21 EANFRRIWWR--PAAPSTASMKKSPSLDLIHRMVGAFEGA--DILFFANSKEFTDVLLVETARLA-----GIG-----RIIMDLPNTDPHPEISPDIVVAPSRATLRETSVKRLA---GAKMVIYP-GADL 133
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9712.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJS5_ECTSI2.580e-5231.83Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus... [more]
A0A6H5K6W1_9PHAE1.950e-5131.11GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A2R5G895_9STRA7.810e-534.35GDP-mannose-dependent alpha-mannosyltransferase n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9712contigD-mesarthrocarpus_Contig9712:1803..4001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJS5
PFAMsGlycos_transf_1
Model size1857
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.97e-54
EggNOG OGs2E46J@1|root,2SB4R@2759|Eukaryota
DescriptionGlycosyl transferases group 1
Cds size1500
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.31132-UTR-D-mesarthrocarpus_Contig9712:1802..20721680791124.31132-UTR-D-mesarthrocarpus_Contig9712:1802..2072Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9712 1803..2072 +
1680791124.3269424-UTR-D-mesarthrocarpus_Contig9712:2176..22021680791124.3269424-UTR-D-mesarthrocarpus_Contig9712:2176..2202Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9712 2177..2202 +
1680791124.341652-UTR-D-mesarthrocarpus_Contig9712:2216..22751680791124.341652-UTR-D-mesarthrocarpus_Contig9712:2216..2275Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9712 2217..2275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.3607419-CDS-D-mesarthrocarpus_Contig9712:2275..24461680791124.3607419-CDS-D-mesarthrocarpus_Contig9712:2275..2446Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9712 2276..2446 +
1680791124.376065-CDS-D-mesarthrocarpus_Contig9712:2672..40011680791124.376065-CDS-D-mesarthrocarpus_Contig9712:2672..4001Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9712 2673..4001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9712.2.1prot_D-mesarthrocarpus_Contig9712.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9712 2276..4001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9712.2.1

>prot_D-mesarthrocarpus_Contig9712.2.1 ID=prot_D-mesarthrocarpus_Contig9712.2.1|Name=mRNA_D-mesarthrocarpus_Contig9712.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=500bp
MEGMKRHATRTALLPENSSPAEIAVVWPLNDTVIPAAEKRIVFNTRGFKV
SAEQPLEIRMPENDDFVRYFEQDLSEIILRGGTIGSHLVNLASHLHPERV
ETAVFFSTILTPEEIRLRRFLVPPCPGYDVDDVNGAVYNNVEKGTRWTTR
TSDRRERTGSKAPHLKLNFSPGADFGAKTNEGMEQSAGVTIQAKTNEHLK
DPIGAGAHRQPIRLCFVGSWKAGIDGQKEIWLQEMERLPQDRFSATYLTF
QAEEDLPGNKGPAEKAAPPTTTASQLALEQRLRAAGVRVIRAPIPPVSLA
EIEAGRTACGGENYRGGGGVCDGSSSSGSSGAVEGSEPQQQPHPPDPEAL
FRAILESLDRAGSKLALMHPPWARRVLEHIIGALGKARPDVLVLGNTRSL
GDAVLTRAARLMVPRGDGNGGHSHLRVVVELPNIDPHPEIDADLLVAPSH
YVARHEGTQALAREVGAGVVVIPPGVDMRSLLHPADAEARLQGRGEFPTK
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mRNA from alignment at D-mesarthrocarpus_Contig9712:1803..4001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9712.2.1 ID=mRNA_D-mesarthrocarpus_Contig9712.2.1|Name=mRNA_D-mesarthrocarpus_Contig9712.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2199bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9712:1803..4001+ (Discosporangium mesarthrocarpum MT17_79)
GGAGCATGGTGGTCGATCCTGTTCACGGTCCTGGCTGCTCAGGCTGTTGG
ACACGATATCCAACTCAACTTGACGTATGAAACTGTCCAAAATGGGGTGC
TAGTGCAACCGTCGTGGCTCGGTCAGAACGAGATCGAGGGCCTGAACGGC
ATTACAGTTCCCGTCTGCGTAACCCTCGGATTACTTGGGGACATTGCCTG
CATCGATATTCCCGATCAAGGTGCCGTATTTGCTATCGAGGATGTCGAAG
AGAAGATCGTGCACTTCAAGGTGAGCGAAGCCAGGTGTCCAACTTATCAC
ATCTGGCAGAAACATTGTCGCTCCTATGGATCTACCTGAGTTTACCATGT
ATTGATCATCCCCCTGGAACTCAGGTAGCCTGGGAAGGGGGGCGTGGGGG
GCCGCACATCTCAGTTCGGTTTGGAGGGACGCAGATCTTCGATCGCGGGA
AAGGGAACATTTTGACAGCAGATATGGAGGGAATGAAACGACATGCAACT
CGGACGGCACTACTACCGGAGAATTCGTCTCCCGCAGAAATTGCCGTGGT
CTGGCCTCTCAACGACACCGTCATCCCAGCGGCCGAAAAGCGGATTGTGT
TCAATACGCGTGGTTTCAAGGTCTCCGCCGAGCAGCCCCTCGAGGTTGGA
CGTATTGTTTCAATAGTAAAACAAAGAACTGATGCTTGGAACATGATGCT
GCTGCTCAATGAACTCTCGAAGTATCTGCCTTGGCTACACTGAAATTGTG
GTGCTCGATCGCCGCCCTACTTACTTGTGGTGACAAATGATATTGAAAAT
TCCCAACCTCTCCTCTTGCAGTTTGAACGAGGCATAAACAAACACGCGCC
GCCGTCGCCCCACGCTCCAGATACGCATGCCAGAGAACGATGACTTCGTT
CGATACTTCGAGCAAGACCTATCGGAGATAATACTGCGGGGGGGGACGAT
TGGAAGTCATTTGGTCAATCTCGCCAGTCATTTGCACCCTGAACGGGTTG
AAACCGCTGTGTTCTTCTCAACAATCCTCACCCCAGAGGAGATCCGATTA
CGGAGGTTTCTCGTCCCACCCTGTCCTGGCTACGACGTTGACGATGTAAA
TGGTGCAGTATACAATAACGTTGAAAAAGGCACCAGATGGACGACACGAA
CGAGCGATAGGCGTGAGAGGACGGGATCGAAGGCCCCACACTTGAAATTA
AATTTTTCACCGGGCGCAGATTTTGGCGCTAAGACGAATGAAGGGATGGA
ACAAAGTGCCGGTGTTACCATTCAAGCCAAAACCAATGAACACCTTAAGG
ATCCCATTGGGGCAGGTGCACACCGGCAGCCCATTCGCCTCTGCTTCGTT
GGAAGCTGGAAGGCCGGGATTGACGGGCAGAAGGAGATTTGGCTCCAAGA
GATGGAGAGGCTCCCACAGGACCGCTTCTCCGCCACCTACCTCACCTTCC
AGGCGGAGGAGGACTTGCCTGGCAACAAAGGTCCAGCCGAGAAGGCGGCA
CCGCCAACAACCACAGCGTCCCAGCTTGCCCTGGAGCAACGGCTCCGAGC
CGCTGGGGTGCGTGTAATCCGAGCACCGATCCCACCAGTGTCCTTGGCTG
AGATTGAGGCTGGCCGCACAGCCTGTGGCGGCGAAAATTACAGAGGCGGC
GGGGGTGTGTGTGATGGGAGCAGCAGCAGTGGCAGTAGTGGTGCAGTGGA
GGGCTCTGAGCCCCAGCAGCAGCCTCACCCCCCAGACCCCGAGGCCCTGT
TCCGGGCCATCCTCGAGAGCCTGGATCGTGCCGGCTCCAAGCTTGCCCTC
ATGCACCCCCCCTGGGCCCGCCGGGTCCTGGAGCACATCATAGGGGCCTT
AGGGAAGGCCCGCCCTGACGTTCTAGTCTTGGGCAACACAAGGTCCCTCG
GGGACGCGGTGCTGACCCGGGCGGCGAGGCTGATGGTGCCCAGGGGCGAC
GGCAACGGCGGCCACAGTCACCTCCGTGTGGTGGTGGAACTTCCAAACAT
TGACCCGCACCCGGAAATTGATGCAGACCTGCTGGTGGCGCCCTCACACT
ATGTGGCCCGCCATGAGGGCACCCAGGCGCTGGCCCGGGAAGTGGGGGCC
GGTGTGGTGGTCATACCCCCCGGGGTCGACATGCGTTCCCTCTTGCACCC
TGCCGACGCCGAGGCGAGGCTACAGGGAAGAGGAGAATTCCCAACAAAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9712:1803..4001+

>mRNA_D-mesarthrocarpus_Contig9712.2.1 ID=mRNA_D-mesarthrocarpus_Contig9712.2.1|Name=mRNA_D-mesarthrocarpus_Contig9712.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1500bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9712:1803..4001+ (Discosporangium mesarthrocarpum MT17_79)
ATGGAGGGAATGAAACGACATGCAACTCGGACGGCACTACTACCGGAGAA
TTCGTCTCCCGCAGAAATTGCCGTGGTCTGGCCTCTCAACGACACCGTCA
TCCCAGCGGCCGAAAAGCGGATTGTGTTCAATACGCGTGGTTTCAAGGTC
TCCGCCGAGCAGCCCCTCGAGATACGCATGCCAGAGAACGATGACTTCGT
TCGATACTTCGAGCAAGACCTATCGGAGATAATACTGCGGGGGGGGACGA
TTGGAAGTCATTTGGTCAATCTCGCCAGTCATTTGCACCCTGAACGGGTT
GAAACCGCTGTGTTCTTCTCAACAATCCTCACCCCAGAGGAGATCCGATT
ACGGAGGTTTCTCGTCCCACCCTGTCCTGGCTACGACGTTGACGATGTAA
ATGGTGCAGTATACAATAACGTTGAAAAAGGCACCAGATGGACGACACGA
ACGAGCGATAGGCGTGAGAGGACGGGATCGAAGGCCCCACACTTGAAATT
AAATTTTTCACCGGGCGCAGATTTTGGCGCTAAGACGAATGAAGGGATGG
AACAAAGTGCCGGTGTTACCATTCAAGCCAAAACCAATGAACACCTTAAG
GATCCCATTGGGGCAGGTGCACACCGGCAGCCCATTCGCCTCTGCTTCGT
TGGAAGCTGGAAGGCCGGGATTGACGGGCAGAAGGAGATTTGGCTCCAAG
AGATGGAGAGGCTCCCACAGGACCGCTTCTCCGCCACCTACCTCACCTTC
CAGGCGGAGGAGGACTTGCCTGGCAACAAAGGTCCAGCCGAGAAGGCGGC
ACCGCCAACAACCACAGCGTCCCAGCTTGCCCTGGAGCAACGGCTCCGAG
CCGCTGGGGTGCGTGTAATCCGAGCACCGATCCCACCAGTGTCCTTGGCT
GAGATTGAGGCTGGCCGCACAGCCTGTGGCGGCGAAAATTACAGAGGCGG
CGGGGGTGTGTGTGATGGGAGCAGCAGCAGTGGCAGTAGTGGTGCAGTGG
AGGGCTCTGAGCCCCAGCAGCAGCCTCACCCCCCAGACCCCGAGGCCCTG
TTCCGGGCCATCCTCGAGAGCCTGGATCGTGCCGGCTCCAAGCTTGCCCT
CATGCACCCCCCCTGGGCCCGCCGGGTCCTGGAGCACATCATAGGGGCCT
TAGGGAAGGCCCGCCCTGACGTTCTAGTCTTGGGCAACACAAGGTCCCTC
GGGGACGCGGTGCTGACCCGGGCGGCGAGGCTGATGGTGCCCAGGGGCGA
CGGCAACGGCGGCCACAGTCACCTCCGTGTGGTGGTGGAACTTCCAAACA
TTGACCCGCACCCGGAAATTGATGCAGACCTGCTGGTGGCGCCCTCACAC
TATGTGGCCCGCCATGAGGGCACCCAGGCGCTGGCCCGGGAAGTGGGGGC
CGGTGTGGTGGTCATACCCCCCGGGGTCGACATGCGTTCCCTCTTGCACC
CTGCCGACGCCGAGGCGAGGCTACAGGGAAGAGGAGAATTCCCAACAAAA
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