mRNA_D-mesarthrocarpus_Contig9712.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9712.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9712.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9712.1.1 vs. uniprot
Match: D7FJS7_ECTSI (MAP kinase phosphatase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 6.830e-13
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  115 KVVDSFLYVGGEDAAKEERLLARSGITHILNCAGPQCPNYLE 240
            +V  SFLYV GEDAAK++ L+A  GITHI+NCAGPQCPNYLE
Sbjct:   32 EVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLE 73
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BLAST of mRNA_D-mesarthrocarpus_Contig9712.1.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 9.420e-13
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  115 KVVDSFLYVGGEDAAKEERLLARSGITHILNCAGPQCPNYLE 240
            +V  SFLYV GEDAAK++ L+A  GITHI+NCAGPQCPNYLE
Sbjct:  152 EVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLE 193
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BLAST of mRNA_D-mesarthrocarpus_Contig9712.1.1 vs. uniprot
Match: A0A835YKW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.090e-8
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:  115 KVVDSFLYVGGEDAAKEERLLARSGITHILNCAGPQCPNYLE 240
            ++V  FLYV GE+ A +   LAR GITH++NCAGP CPNY E
Sbjct:   62 EIVPGFLYVSGEEVACDGTALARVGITHVINCAGPHCPNYHE 103
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJS7_ECTSI6.830e-1373.81MAP kinase phosphatase 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L2L8_9PHAE9.420e-1373.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKW6_9STRA1.090e-859.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9712contigD-mesarthrocarpus_Contig9712:284..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJS7
PFAMsDSPc
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K04459,ko:K21278
KEGG Pathwayko04010,ko04726,ko05418,map04010,map04726,map05418
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.12e-13
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota
EC3.1.3.16,3.1.3.48
Descriptionprotein tyrosine/serine/threonine phosphatase activity
Cds size243
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.2745905-CDS-D-mesarthrocarpus_Contig9712:283..5261680791124.2745905-CDS-D-mesarthrocarpus_Contig9712:283..526Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9712 284..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9712.1.1prot_D-mesarthrocarpus_Contig9712.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9712 284..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9712.1.1

>prot_D-mesarthrocarpus_Contig9712.1.1 ID=prot_D-mesarthrocarpus_Contig9712.1.1|Name=mRNA_D-mesarthrocarpus_Contig9712.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=81bp
PPPTIRIHSPHPGLRRSVYSDPRKMILTISRNFCPKRYKVVDSFLYVGGE
DAAKEERLLARSGITHILNCAGPQCPNYLEQ
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mRNA from alignment at D-mesarthrocarpus_Contig9712:284..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9712.1.1 ID=mRNA_D-mesarthrocarpus_Contig9712.1.1|Name=mRNA_D-mesarthrocarpus_Contig9712.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=243bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9712:284..526- (Discosporangium mesarthrocarpum MT17_79)
CCACCCCCTACCATACGGATCCATTCCCCACACCCCGGTCTCCGGCGATC
CGTTTATAGCGATCCACGCAAAATGATTCTAACCATCTCGCGAAATTTCT
GTCCTAAACGGTACAAGGTGGTGGACTCCTTCCTGTACGTCGGAGGCGAG
GACGCTGCCAAGGAAGAGAGGCTGTTAGCACGCTCGGGCATAACTCACAT
CCTCAATTGTGCGGGTCCTCAGTGCCCGAACTATCTCGAGCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9712:284..526-

>mRNA_D-mesarthrocarpus_Contig9712.1.1 ID=mRNA_D-mesarthrocarpus_Contig9712.1.1|Name=mRNA_D-mesarthrocarpus_Contig9712.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=243bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9712:284..526- (Discosporangium mesarthrocarpum MT17_79)
CCACCCCCTACCATACGGATCCATTCCCCACACCCCGGTCTCCGGCGATC
CGTTTATAGCGATCCACGCAAAATGATTCTAACCATCTCGCGAAATTTCT
GTCCTAAACGGTACAAGGTGGTGGACTCCTTCCTGTACGTCGGAGGCGAG
GACGCTGCCAAGGAAGAGAGGCTGTTAGCACGCTCGGGCATAACTCACAT
CCTCAATTGTGCGGGTCCTCAGTGCCCGAACTATCTCGAGCAG
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