mRNA_D-mesarthrocarpus_Contig9711.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9711.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9711.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9711contigD-mesarthrocarpus_Contig9711:2..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1267533.KB906734_gene4226
PFAMsGlyoxalase,SnoaL_3
Model size354
Max annot lvl2|Bacteria
KEGG koko:K04750
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.38e-05
EggNOG OGsCOG2764@1|root,COG2764@2|Bacteria
Descriptionglyoxalase bleomycin resistance protein dioxygenase
Cds size351
COG categoryE
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.221856-CDS-D-mesarthrocarpus_Contig9711:2..3261680791124.221856-CDS-D-mesarthrocarpus_Contig9711:2..326Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9711 3..326 -
1680791124.2337458-CDS-D-mesarthrocarpus_Contig9711:448..4751680791124.2337458-CDS-D-mesarthrocarpus_Contig9711:448..475Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9711 449..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9711.1.1prot_D-mesarthrocarpus_Contig9711.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9711 3..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9711.1.1

>prot_D-mesarthrocarpus_Contig9711.1.1 ID=prot_D-mesarthrocarpus_Contig9711.1.1|Name=mRNA_D-mesarthrocarpus_Contig9711.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=117bp
AKGKCNHPEDPLTLWGVQVYIITANSGKLVEFLTKTVGAHEHRYSEGNSI
VDLVLDIGGDSLLVAEKETKFEKRVDGGTNDSSSSLHLKTPNPESLGVRL
VMSGAKAILPCEERFWS
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9711:2..475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9711.1.1 ID=mRNA_D-mesarthrocarpus_Contig9711.1.1|Name=mRNA_D-mesarthrocarpus_Contig9711.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=474bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9711:2..475- (Discosporangium mesarthrocarpum MT17_79)
GCAAAGGGAAAATGCAATCATCCTGAGGTATGCATTCCCCCTGCTCCGCT
TATGTCCATGGCTGCAGCAGCGTCAGTAGGATACATTTTAGACTTCACTT
TGCCTTCAACAGGCGGAGTGATCCTGTGCCTGTTGCTCTGCTGTTTCAGG
ACCCACTGACACTGTGGGGTGTCCAGGTCTACATCATCACGGCAAACTCT
GGGAAACTCGTTGAATTCTTGACCAAGACTGTTGGGGCTCACGAGCACAG
GTATTCTGAGGGGAACTCGATCGTGGACCTAGTGTTGGACATCGGCGGCG
ATTCACTGCTAGTAGCTGAGAAGGAGACCAAGTTCGAGAAGAGGGTTGAT
GGAGGGACCAACGATTCCAGTTCCAGCTTGCACCTCAAGACTCCTAACCC
CGAGTCTCTAGGTGTGAGATTGGTCATGAGTGGTGCCAAGGCAATCCTCC
CATGTGAGGAGCGATTCTGGAGTG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9711:2..475-

>mRNA_D-mesarthrocarpus_Contig9711.1.1 ID=mRNA_D-mesarthrocarpus_Contig9711.1.1|Name=mRNA_D-mesarthrocarpus_Contig9711.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=351bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9711:2..475- (Discosporangium mesarthrocarpum MT17_79)
GCAAAGGGAAAATGCAATCATCCTGAGGACCCACTGACACTGTGGGGTGT
CCAGGTCTACATCATCACGGCAAACTCTGGGAAACTCGTTGAATTCTTGA
CCAAGACTGTTGGGGCTCACGAGCACAGGTATTCTGAGGGGAACTCGATC
GTGGACCTAGTGTTGGACATCGGCGGCGATTCACTGCTAGTAGCTGAGAA
GGAGACCAAGTTCGAGAAGAGGGTTGATGGAGGGACCAACGATTCCAGTT
CCAGCTTGCACCTCAAGACTCCTAACCCCGAGTCTCTAGGTGTGAGATTG
GTCATGAGTGGTGCCAAGGCAATCCTCCCATGTGAGGAGCGATTCTGGAG
T
back to top