mRNA_D-mesarthrocarpus_Contig9708.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9708.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9708.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: D7FQ27_ECTSI (Chorismate mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ27_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.960e-35
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:    1 EDGSTYQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEETV------------YKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGIHN 300
            ED  TYQ LCR GD  GV  LLT++ VEE+VL+RAF+KAS YG DIN +  S E              +KV+PQ I +IYRD VIPLTKD EILYLFQRTG PCP LEGIH+
Sbjct:  284 EDSKTYQDLCRAGDARGVLELLTNKAVEEKVLKRAFMKASTYGSDINDVPVSTEDAKGGDGAAKAEQNFKVNPQFIVDIYRDTVIPLTKDVEILYLFQRTGYPCPSLEGIHD 395
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: A0A6U1P8R8_9STRA (Chorismate mutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1P8R8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.240e-32
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 EDGSTYQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEETVYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGIHN 300
            ++ S Y++L R GD +GV  LLT+ +VEE VL+RAF KAS YGQDI      E T YKV+P+II  +Y+ ++IPLTK+ E+LYLF+R GCPCP L GIH+
Sbjct:  269 DNPSQYEALVRAGDAKGVYDLLTNASVEELVLQRAFRKASTYGQDITATGDPETTEYKVEPRIIRGLYKSVIIPLTKEVEVLYLFERVGCPCPDLSGIHD 368
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: A0A836CAA2_9STRA (Chorismate mutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.810e-28
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 EDGSTYQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEETVYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGIHN 300
            EDG  Y++LC  G+  GVN LLT++ VE++V+ RA  KA+AY Q+I     +    +KV P+ IS IY+D++IPLTKD EILYLFQRTG  CP L GIH+
Sbjct:  126 EDGDLYRNLCSEGNARGVNELLTNKAVEKKVIERALNKATAYAQEITWEGAAGSR-FKVRPEAISAIYKDIIIPLTKDVEILYLFQRTGYTCPSLAGIHD 224
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: A0A4D9CWZ2_9STRA (Chorismate mutase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWZ2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.430e-22
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 EDGSTYQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEETVYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCP-PLEG 291
            ED + Y++L    DV+GV SLLT+  VE RVL RA +KAS YGQDI      E    KV+P +I+ IYRD++IPLTKD E+LYLF+R G   P P+ G
Sbjct:  164 EDEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDI----MGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPMPG 257
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: W7U1H9_9STRA (Chorismate mutase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1H9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.620e-21
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 EDGSTYQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEETVYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCP-PLEG 291
            E+ + Y++L    DV+GV SLLT+  VE RVL RA +KAS YGQDI      E    KV+P +I+ IYRD++IPLTKD E+LYLF+R G   P PL G
Sbjct:  330 EEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDI----MGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPG 423
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: M4B4R8_HYAAE (Chorismate mutase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4R8_HYAAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.170e-18
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   16 YQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEETVYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGI 294
            Y  L    D +G+   LTD TVE++VL R  +KAS YGQD N  +TS +   KVDPQ+IS++YRD V+PLTK  ++ YL QR       + G+
Sbjct:  145 YTKLILANDADGIMEALTDSTVEKKVLERVKLKASTYGQDPNSPATSSDKELKVDPQLISDLYRDFVMPLTKQVQVRYLLQRVAHSSIAVTGV 237
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: H3H3Y7_PHYRM (Chorismate mutase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3Y7_PHYRM)

HSP 1 Score: 89.0 bits (219), Expect = 1.740e-18
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   16 YQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEETVYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGIHN 300
            Y  L    D +G+   LT+  VEE+VL R  +KAS YGQD N  + S++  +KV+PQ+IS++YRD V+PLTK+ ++ YL QR   P   + G+  
Sbjct:  407 YTKLILANDADGIMQALTNLAVEEKVLERVKLKASTYGQDPNAPTASDDKEWKVNPQLISDLYRDFVMPLTKEVQVQYLLQRVAHPSIAVAGVEG 501
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: A0A2D4BD73_PYTIN (Chorismate mutase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD73_PYTIN)

HSP 1 Score: 88.6 bits (218), Expect = 2.310e-18
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   16 YQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEETVY--KVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGIHN 300
            Y  L    D EG+ + LT+  VEE+VLRR  +KAS YGQD+   S +  T    KVDPQ+IS++YRD V+PLTK+ +++YL QR   P   + G+  
Sbjct:  197 YTQLILANDAEGIMAALTNMAVEEKVLRRVQLKASTYGQDVQEGSQTTATANECKVDPQLISDLYRDFVMPLTKEVQVMYLLQRLAHPSISVAGVEG 293
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: A0A5D6XK63_9STRA (Chorismate mutase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK63_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.090e-17
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:   16 YQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLSTSEET---VYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGIHN 300
            Y  L R  D  G+   LT+  VEE+VL R  +KAS YGQD+   +T+ E     +KVDPQ+IS+IYRD V+PLTK+ ++ YL QR   P   + G+  
Sbjct:  188 YTRLIRANDAVGLMDALTNLAVEEKVLERVKLKASTYGQDLEGAATAPEPHACEWKVDPQLISDIYRDFVMPLTKEVQVAYLLQRLAHPSVSVAGVEG 285
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BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Match: K3X8Z2_GLOUD (Chorismate mutase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8Z2_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 1.090e-17
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   16 YQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLS-TSEETVYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGIHN 300
            Y  L    D  G+   LT+  VEE+VL R  +KAS YGQD+   + +S  T +KVDPQ+IS+IYRD V+PLTK+ ++ YL QR   P   + G+  
Sbjct:  188 YSQLILANDAAGIMEALTNMAVEEKVLERVKLKASTYGQDLEGSAPSSSSTEWKVDPQLISDIYRDFVMPLTKEVQVAYLLQRLAHPTISVAGVEG 283
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9708.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ27_ECTSI3.960e-3559.82Chorismate mutase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A6U1P8R8_9STRA4.240e-3256.00Chorismate mutase n=1 Tax=Fibrocapsa japonica TaxI... [more]
A0A836CAA2_9STRA3.810e-2854.00Chorismate mutase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9CWZ2_9STRA4.430e-2253.06Chorismate mutase n=1 Tax=Nannochloropsis salina C... [more]
W7U1H9_9STRA5.620e-2153.06Chorismate mutase n=1 Tax=Nannochloropsis gaditana... [more]
M4B4R8_HYAAE1.170e-1846.24Chorismate mutase n=1 Tax=Hyaloperonospora arabido... [more]
H3H3Y7_PHYRM1.740e-1843.16Chorismate mutase n=1 Tax=Phytophthora ramorum Tax... [more]
A0A2D4BD73_PYTIN2.310e-1845.36Chorismate mutase n=1 Tax=Pythium insidiosum TaxID... [more]
A0A5D6XK63_9STRA1.090e-1744.90Chorismate mutase n=1 Tax=Pythium brassicum TaxID=... [more]
K3X8Z2_GLOUD1.090e-1744.79Chorismate mutase n=1 Tax=Globisporangium ultimum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9708contigD-mesarthrocarpus_Contig9708:4123..4428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQ27
Preferred nameARO7
PFAMsPDT
Model size306
Max annot lvl2759|Eukaryota
KEGG rclassRC03116
KEGG koko:K01850
KEGG ReactionR01715
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00024,M00025
Hectar predicted targeting categoryother localisation
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004106,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006568,GO:0006570,GO:0006571,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016866,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223
Exons1
Evalue6.5e-36
EggNOG OGsCOG1605@1|root,KOG0795@2759|Eukaryota
Ec32 ortholog descriptionChorismate Mutase
Ec32 orthologEc-01_007700.1
EC5.4.99.5
Descriptionchorismate mutase activity
Cds size306
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.1310885-CDS-D-mesarthrocarpus_Contig9708:4122..44281680791124.1310885-CDS-D-mesarthrocarpus_Contig9708:4122..4428Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9708 4123..4428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9708.2.1prot_D-mesarthrocarpus_Contig9708.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9708 4123..4428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9708.2.1

>prot_D-mesarthrocarpus_Contig9708.2.1 ID=prot_D-mesarthrocarpus_Contig9708.2.1|Name=mRNA_D-mesarthrocarpus_Contig9708.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=102bp
EDGSTYQSLCRCGDVEGVNSLLTDETVEERVLRRAFIKASAYGQDINVLS
TSEETVYKVDPQIISNIYRDLVIPLTKDAEILYLFQRTGCPCPPLEGIHN
R*
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mRNA from alignment at D-mesarthrocarpus_Contig9708:4123..4428-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9708.2.1 ID=mRNA_D-mesarthrocarpus_Contig9708.2.1|Name=mRNA_D-mesarthrocarpus_Contig9708.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=306bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9708:4123..4428- (Discosporangium mesarthrocarpum MT17_79)
GAGGATGGGAGCACATACCAGTCGCTGTGCCGGTGTGGGGATGTGGAGGG
CGTGAACTCCCTGCTGACGGACGAGACGGTGGAGGAGAGGGTCCTCCGCC
GCGCCTTTATCAAGGCCTCTGCATACGGTCAAGACATCAATGTCTTGAGC
ACCAGTGAGGAGACCGTGTACAAGGTCGACCCCCAGATCATCTCAAACAT
ATACCGTGACCTCGTCATCCCCCTGACCAAGGACGCGGAAATCCTATACC
TCTTCCAGAGGACTGGCTGCCCCTGCCCCCCCCTGGAAGGCATCCACAAC
AGATGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9708:4123..4428-

>mRNA_D-mesarthrocarpus_Contig9708.2.1 ID=mRNA_D-mesarthrocarpus_Contig9708.2.1|Name=mRNA_D-mesarthrocarpus_Contig9708.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=306bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9708:4123..4428- (Discosporangium mesarthrocarpum MT17_79)
GAGGATGGGAGCACATACCAGTCGCTGTGCCGGTGTGGGGATGTGGAGGG
CGTGAACTCCCTGCTGACGGACGAGACGGTGGAGGAGAGGGTCCTCCGCC
GCGCCTTTATCAAGGCCTCTGCATACGGTCAAGACATCAATGTCTTGAGC
ACCAGTGAGGAGACCGTGTACAAGGTCGACCCCCAGATCATCTCAAACAT
ATACCGTGACCTCGTCATCCCCCTGACCAAGGACGCGGAAATCCTATACC
TCTTCCAGAGGACTGGCTGCCCCTGCCCCCCCCTGGAAGGCATCCACAAC
AGATGA
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