mRNA_D-mesarthrocarpus_Contig970.9.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig970.9.1
Unique NamemRNA_D-mesarthrocarpus_Contig970.9.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: A0A7R9UAS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAS7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.170e-10
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   31 EKERDEKKACTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSVAVEGAPVDDAGNQ 201
            E E  E+K  T+FVGNLP+S   + V R F  +G+V +VR+RS+AV+G  +D+AGNQ
Sbjct:   78 EAETHEEKQRTIFVGNLPVSLKKRHVERFFSRYGRVEAVRLRSMAVKGVKIDEAGNQ 134          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: C1MLA5_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MLA5_MICPC)

HSP 1 Score: 55.5 bits (132), Expect = 3.180e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   43 DEKKACTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSVAVE 171
            DE  +CTVFVGNLP++T PK +  +F +FG V SVRIRSV V+
Sbjct:  161 DELLSCTVFVGNLPLTTKPKLLKSVFSKFGPVVSVRIRSVPVD 203          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: A0A7S3YGS8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGS8_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 3.380e-7
Identity = 23/56 (41.07%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   34 KERDEKKACTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSVAVEGAPVDDAGNQ 201
            +E + K   T+FVGN+PIS    ++ ++F+++G++ S+R+RSV  +G  VD+ GNQ
Sbjct:   76 EENNGKDERTIFVGNIPISVKMAQLQKMFKKYGQIESMRMRSVNTQGVAVDEHGNQ 131          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: L8HJS9_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJS9_ACACA)

HSP 1 Score: 52.0 bits (123), Expect = 5.270e-6
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   43 DEKKACTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSVA 165
            ++KK CT+FVGN+P++   K++ R+F  +GK+ S+R RSVA
Sbjct:  136 EKKKECTIFVGNVPVTVTKKELRRIFAPYGKIQSIRFRSVA 176          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: A0A061RSU3_9CHLO (Rna binding n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RSU3_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.290e-5
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:   58 CTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSVAVE--------GAPVDDAGNQVRQS 213
             T+FVGN+P+S   K +  LFR FGKV SVR+RSV V+        GA +    N+ R S
Sbjct:  136 ATLFVGNVPLSCTKKNLKTLFRRFGKVVSVRVRSVPVKLDSKMPRRGAVITGTTNEARSS 195          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: A0A061SHY7_9CHLO (Nucleolar protein 12 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SHY7_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.350e-5
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:   58 CTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSVAVE--------GAPVDDAGNQVRQS 213
             T+FVGN+P+S   K +  LFR FGKV SVR+RSV V+        GA +    N+ R S
Sbjct:  136 ATLFVGNVPLSCTKKNLKTLFRRFGKVVSVRVRSVPVKLDSKMPRRGAVITGTTNEARSS 195          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: A0A5J4YT46_PORPP (RNA-binding protein 34 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT46_PORPP)

HSP 1 Score: 50.8 bits (120), Expect = 1.370e-5
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   49 KKACTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSVA 165
            +K+ TVFVGN+P +   K++TRLF +FGK+ SVR+RS+A
Sbjct:  255 RKSQTVFVGNVPAAATRKQLTRLFSQFGKIESVRLRSIA 293          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: I1GKN9_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GKN9_BRADI)

HSP 1 Score: 50.1 bits (118), Expect = 2.540e-5
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    4 GGGEELEQEEKERDEKKACTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSVAVEGAPVDDAGNQVR 207
            G G + E+E  + + K   TVFVGNLP+ T  K +T+ F  FG+V SVRIRSV +    +   G  ++
Sbjct:  128 GAGADEEEEAFDDEAKLLRTVFVGNLPLRTKKKALTKEFAAFGEVESVRIRSVPLGDTKIPRKGAVIK 195          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: A0A0B2UR20_TOXCA (RNA-binding protein 34 n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2UR20_TOXCA)

HSP 1 Score: 49.7 bits (117), Expect = 3.440e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   52 KACTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSV 162
            KACTVFVGN PIS   K + +LF ++G + +VR+RSV
Sbjct:  143 KACTVFVGNTPISASRKTIRKLFSKYGPIETVRLRSV 179          
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Match: A0A453MLA8_AEGTS (RRM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MLA8_AEGTS)

HSP 1 Score: 47.0 bits (110), Expect = 5.880e-5
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   10 GEELEQEEKERDEKKACTVFVGNLPISTGPKKVTRLFREFGKVASVRIRSV 162
            G E E E  + + K   TVFVGNLP+ T  K +T+ F  FG+V SVRIRSV
Sbjct:   29 GGESEDEAFDDEGKLLRTVFVGNLPLRTKRKALTKEFAAFGEVDSVRIRSV 79          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig970.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7R9UAS7_9STRA4.170e-1050.88Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
C1MLA5_MICPC3.180e-760.47Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S3YGS8_HETAK3.380e-741.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
L8HJS9_ACACA5.270e-648.78RNA recognition motif domain containing protein n=... [more]
A0A061RSU3_9CHLO1.290e-545.00Rna binding n=1 Tax=Tetraselmis sp. GSL018 TaxID=5... [more]
A0A061SHY7_9CHLO1.350e-545.00Nucleolar protein 12 n=1 Tax=Tetraselmis sp. GSL01... [more]
A0A5J4YT46_PORPP1.370e-556.41RNA-binding protein 34 n=1 Tax=Porphyridium purpur... [more]
I1GKN9_BRADI2.540e-541.18Uncharacterized protein n=1 Tax=Brachypodium dista... [more]
A0A0B2UR20_TOXCA3.440e-556.76RNA-binding protein 34 n=1 Tax=Toxocara canis TaxI... [more]
A0A453MLA8_AEGTS5.880e-552.94RRM domain-containing protein n=1 Tax=Aegilops tau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig970contigD-mesarthrocarpus_Contig970:24932..25147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LFV0
Preferred namemyef2
PFAMsABC2_membrane,ABC_tran,RRM_1
Model size216
Max annot lvl2759|Eukaryota
KEGG koko:K05679,ko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0097159,GO:1901363
Exons1
Evalue2.93e-11
EggNOG OGsCOG1131@1|root,KOG0118@1|root,KOG0061@2759|Eukaryota,KOG0118@2759|Eukaryota
DescriptionRNA binding
Cds size216
COG categoryH
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791123.693907-CDS-D-mesarthrocarpus_Contig970:24931..251471680791123.693907-CDS-D-mesarthrocarpus_Contig970:24931..25147Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig970 24932..25147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig970.9.1prot_D-mesarthrocarpus_Contig970.9.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig970 24932..25147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig970.9.1

>prot_D-mesarthrocarpus_Contig970.9.1 ID=prot_D-mesarthrocarpus_Contig970.9.1|Name=mRNA_D-mesarthrocarpus_Contig970.9.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=72bp
GGGGEELEQEEKERDEKKACTVFVGNLPISTGPKKVTRLFREFGKVASVR
IRSVAVEGAPVDDAGNQVRQS*
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mRNA from alignment at D-mesarthrocarpus_Contig970:24932..25147+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig970.9.1 ID=mRNA_D-mesarthrocarpus_Contig970.9.1|Name=mRNA_D-mesarthrocarpus_Contig970.9.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=216bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig970:24932..25147+ (Discosporangium mesarthrocarpum MT17_79)
GGGGGAGGGGGAGAGGAGCTGGAGCAGGAGGAGAAGGAGAGGGATGAGAA GAAGGCGTGCACGGTGTTCGTGGGCAACCTCCCCATCTCAACTGGCCCAA AGAAGGTTACGAGACTGTTCCGCGAGTTTGGGAAGGTTGCCTCTGTGAGG ATCCGCTCTGTTGCTGTCGAGGGCGCCCCTGTGGATGACGCTGGGAACCA GGTTCGTCAGAGCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig970:24932..25147+

>mRNA_D-mesarthrocarpus_Contig970.9.1 ID=mRNA_D-mesarthrocarpus_Contig970.9.1|Name=mRNA_D-mesarthrocarpus_Contig970.9.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=216bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig970:24932..25147+ (Discosporangium mesarthrocarpum MT17_79)
GGGGGAGGGGGAGAGGAGCTGGAGCAGGAGGAGAAGGAGAGGGATGAGAA
GAAGGCGTGCACGGTGTTCGTGGGCAACCTCCCCATCTCAACTGGCCCAA
AGAAGGTTACGAGACTGTTCCGCGAGTTTGGGAAGGTTGCCTCTGTGAGG
ATCCGCTCTGTTGCTGTCGAGGGCGCCCCTGTGGATGACGCTGGGAACCA
GGTTCGTCAGAGCTAG
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