mRNA_D-mesarthrocarpus_Contig97.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig97.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig97.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig97.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig97contigD-mesarthrocarpus_Contig97:2223..3696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size685
Hectar predicted targeting categoryother localisation
Exons2
Cds size654
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791122.3626366-CDS-D-mesarthrocarpus_Contig97:2222..27981680791122.3626366-CDS-D-mesarthrocarpus_Contig97:2222..2798Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig97 2223..2798 -
1680791122.3780775-CDS-D-mesarthrocarpus_Contig97:3587..36651680791122.3780775-CDS-D-mesarthrocarpus_Contig97:3587..3665Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig97 3588..3665 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791122.3917572-UTR-D-mesarthrocarpus_Contig97:3665..36961680791122.3917572-UTR-D-mesarthrocarpus_Contig97:3665..3696Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig97 3666..3696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig97.2.1prot_D-mesarthrocarpus_Contig97.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig97 2223..3665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig97.2.1

>prot_D-mesarthrocarpus_Contig97.2.1 ID=prot_D-mesarthrocarpus_Contig97.2.1|Name=mRNA_D-mesarthrocarpus_Contig97.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=218bp
MGGVGHRGPKIGGRPGVPFSRERKEQQQAHACEARLFATIEGVRATVARA
VGWRRRQAILARQEKAREINLHANHAAERGRERARDQLRLRAPPPHPRAH
SEDPTDSKVRAQRRGRVRGGLVGDVKGRARVYRGFSDGERGSGSERDEDE
WAKGMGAGRESQDRRKINGVRKRGSWVGGRQASGRGGEHARGRGRSKVGG
VGGEQQREEKNLETSDTD
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mRNA from alignment at D-mesarthrocarpus_Contig97:2223..3696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig97.2.1 ID=mRNA_D-mesarthrocarpus_Contig97.2.1|Name=mRNA_D-mesarthrocarpus_Contig97.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1474bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig97:2223..3696- (Discosporangium mesarthrocarpum MT17_79)
AGGGGGAGAGCAGAAGAAGATTGACCTCAACATGGGGGGTGTGGGTCACC
GAGGCCCAAAGATTGGGGGGAGGCCTGGGGTCCCTTTTTCCAGGGAACGA
AAAGAGCAGGTTCGTTTTGGGGGTGCTTCCGTGTTTGTGATGTGTACTTT
TTGCCCTGTGTTTTGCCTGTCCAATTGAAGTTTGTCCAGAGGCTTTCAAT
ATTCTGGATCCACTGATGAATGGGTGCAAGCAGTACAACATGAAGTTTTA
CAGTGTAGCCCGGTGTGTCAAAGGGAGTTGGGGCCATTATGTTGGTGTGT
CATATTTTTTGTGTCAACCAGAAGAGATTAATCTGTATGGTTTCAATTCC
TGCTGCCCAAAATGCTGCCATACCTGCTTATCAGCACCTGTAATATTCTC
CATCCTTCAATTTTATTTTATTTTCATGTTGCACTGGTCGCAAAAGACAT
CTCTGCCACTGTTGGAGCTGATGAAATTTATTATCAAGGCCGTCGGTGAG
GCCCTGTGGTGGTGGTAGTCATCAGTGTCTAGCATAGCTTTCAATTGCTC
CGTAGATGCTTTGAGGCGTACCTGATATTCCACTTTTTTGAAGTATGTTT
TGTATGCTGCTTCTGTTCAACTGCTACAGCAGTAAGAAACAAAGTGAGAA
CTTTCCTTCAAAAATGAAGGAGAGACCTTTTGACGATTTACTCACAACCT
GTACTTCTTGCTTTGAAATGCCAACCCTAACCCTAACCCTGACAACCCAA
GAAAAAATTAATATAAGAACTCTAGTCTGGCGTTGCTAACTACTCTTAAG
AATCTAAATAACTGCCGTTCCTAAATACTTTCCACCCGCGTCCACCGACC
CCCCCCCCCCCCCCCCATGAACCAACGCTCCATCACCTCACTGCTCAGCA
ACAGGCCCATGCTTGTGAGGCGCGCTTATTCGCCACCATCGAAGGCGTTC
GGGCTACGGTAGCGAGGGCTGTGGGCTGGAGGAGGAGGCAGGCAATCTTG
GCCCGGCAGGAGAAGGCCCGGGAAATAAACCTCCACGCCAATCATGCGGC
GGAGCGAGGCCGTGAGAGAGCGCGGGATCAACTGAGGCTCAGGGCCCCCC
CCCCCCACCCCAGGGCCCACTCCGAAGACCCAACGGACTCCAAGGTTCGT
GCACAGAGACGGGGCAGGGTGCGGGGGGGCCTGGTGGGGGATGTGAAGGG
GAGGGCCAGAGTATACAGAGGTTTCTCTGATGGGGAACGGGGGAGCGGGA
GTGAGAGGGATGAGGATGAGTGGGCCAAGGGAATGGGTGCAGGAAGGGAG
AGTCAGGACCGGAGGAAGATTAACGGTGTTCGGAAGAGGGGCAGCTGGGT
AGGTGGCCGTCAGGCATCAGGCCGTGGCGGTGAGCATGCTAGGGGGAGGG
GAAGGAGCAAGGTCGGAGGCGTGGGAGGGGAACAACAGAGGGAAGAAAAG
AATTTGGAAACCTCCGACACAGAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig97:2223..3696-

>mRNA_D-mesarthrocarpus_Contig97.2.1 ID=mRNA_D-mesarthrocarpus_Contig97.2.1|Name=mRNA_D-mesarthrocarpus_Contig97.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=654bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig97:2223..3696- (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGGTGTGGGTCACCGAGGCCCAAAGATTGGGGGGAGGCCTGGGGT
CCCTTTTTCCAGGGAACGAAAAGAGCAGCAACAGGCCCATGCTTGTGAGG
CGCGCTTATTCGCCACCATCGAAGGCGTTCGGGCTACGGTAGCGAGGGCT
GTGGGCTGGAGGAGGAGGCAGGCAATCTTGGCCCGGCAGGAGAAGGCCCG
GGAAATAAACCTCCACGCCAATCATGCGGCGGAGCGAGGCCGTGAGAGAG
CGCGGGATCAACTGAGGCTCAGGGCCCCCCCCCCCCACCCCAGGGCCCAC
TCCGAAGACCCAACGGACTCCAAGGTTCGTGCACAGAGACGGGGCAGGGT
GCGGGGGGGCCTGGTGGGGGATGTGAAGGGGAGGGCCAGAGTATACAGAG
GTTTCTCTGATGGGGAACGGGGGAGCGGGAGTGAGAGGGATGAGGATGAG
TGGGCCAAGGGAATGGGTGCAGGAAGGGAGAGTCAGGACCGGAGGAAGAT
TAACGGTGTTCGGAAGAGGGGCAGCTGGGTAGGTGGCCGTCAGGCATCAG
GCCGTGGCGGTGAGCATGCTAGGGGGAGGGGAAGGAGCAAGGTCGGAGGC
GTGGGAGGGGAACAACAGAGGGAAGAAAAGAATTTGGAAACCTCCGACAC
AGAC
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