mRNA_D-mesarthrocarpus_Contig97.11.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig97.11.2
Unique NamemRNA_D-mesarthrocarpus_Contig97.11.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig97.11.2 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.000e-37
Identity = 202/640 (31.56%), Postives = 289/640 (45.16%), Query Frame = 1 
Query:   61 LDGLIGCMYIVPVRMEAAMTLYYASCTNGDACGAHSSGADLIMERGGMEAIVHVLDSSITPIDRGVVGAGE-KGYFRPHELEPGEVSLRLWLCATLRQLLLSRPGAASALVALQGVTSLCQVIAADREDVAGYASAALAAAARAEAPGFGSEGVAEA------AVKAGVTSHLIATLTGSDPRAWGSNHGAAPGAPQGGSRGIRIKDHPNPRQAAGAMDLLSILASRPGLAGQLYKAGVGPVSASWLAVLEE-----GMALEPTVKA-VLQGALVTLTGLLSG----LSGTAEGKA--LAAELSSLGSVHWVLALLLRKDPVMTRLASSLILGLLS-CSPMASTGSTRG----IPREMVAMGYLAGLWATITAISSSGARSPSALRSSVEESALSPVNTPLMALARLLSHPEVMVSRASGEPALALVAEGGAVRILVQDYIAPGITDMHMGPGSGVKVNSASGGDPSTPEHLLSIA----LATSALLTFHGLAGSIEPSVHGLMLAVAGVDDLDTSSLTPANPSSSGSNSTPATSWDIVASSLGAAMDFAQNRGMLGTGTGTGAEAVEAALLAMGSVCGAPPLP------------RGMPAATLERLLPQYGDRAGGPSCTAAGCSRQALSLGSTAVQLL 1860
            +DGL+ C+ + P R +AA  L+YA+        A  +G +LI  RGG+  ++ VL+S   P+      A E KG             LR+WLCATL+ ++  RP A  A +A +G+  LC+ + A   D+A +    LA+A R+          A        AV A +   L+  L G   +                          +   +A AM+LL +LAS P  +G+L  AG  P  A   A LE+       A EP  +A ++Q AL+ LTG L G     +  AE K   +AAE+++  +   V+ALL   DP +    + L L L   C P  +  S RG    I ++M+  G L  LW   +         PS +   V   AL+ +     A++R         SRAS E  LALV+EG AV  LV+ ++ P ++ +    G GV    A GG  + P    + A    +ATSALL  H LA + +P+VHGL +  AGVD+           SS+         W  + SS+ A    A+ RG        G   +EAALLA GSVCGAPPLP              + A  ++R+LP Y  RA   +C  A  S  +  L + AV LL
Sbjct:  180 VDGLLECLRVAPARAKAARALFYAA----KVPLAGGTGGELIESRGGVSIMLEVLES--LPLAPPPTAAVETKG-------------LRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLVAGPADIAVHVCGVLASALRSGXXXXXXXXXAAVPRSAIEAVDASIIDPLLGMLAGGTSK--------------------------DAHASALAMELLVVLASHPPFSGRLRAAGTIPAVA---ACLEDHPARGAAAAEPVTRASLMQLALIVLTGFLRGDGDQPAAAAEAKVDEIAAEIAATRAHVRVVALLSAPDPKLRFTTAELALQLSRRCRPGPAPNSNRGGGGGIAKDMIEAGGLGALWRACS--------DPSPMARPVALEALAAMLGTAAAMSR---------SRASSEAVLALVSEG-AVEGLVRQHVDPALSVLGRR-GRGV----AGGGSATIPGDAAAAATXXXVATSALLALHFLAANPDPAVHGLFVVAAGVDEQXXXXXXXXXXSST---------WSTILSSVEAG---AEGRG--------GPAFLEAALLAAGSVCGAPPLPVLGVGGGAVAPSGSVAADEVDRVLPAYQARAQTANCLLAAASATSRGLATRAVALL 728
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig97.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQZ1_9PHAE4.000e-3731.56FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig97contigD-mesarthrocarpus_Contig97:44251..47842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FT64
PFAMsFYVE,PH,Sec7,zf-RanBP
Model size1882
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.08e-21
EggNOG OGsKOG1729@1|root,KOG1729@2759|Eukaryota
Descriptionlipid binding
Cds size1857
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791123.1601224-CDS-D-mesarthrocarpus_Contig97:44250..452451680791123.1601224-CDS-D-mesarthrocarpus_Contig97:44250..45245Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig97 44251..45245 -
1680791123.1781135-CDS-D-mesarthrocarpus_Contig97:45646..459951680791123.1781135-CDS-D-mesarthrocarpus_Contig97:45646..45995Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig97 45647..45995 -
1680791123.1907725-CDS-D-mesarthrocarpus_Contig97:46794..471241680791123.1907725-CDS-D-mesarthrocarpus_Contig97:46794..47124Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig97 46795..47124 -
1680791123.208705-CDS-D-mesarthrocarpus_Contig97:47635..478181680791123.208705-CDS-D-mesarthrocarpus_Contig97:47635..47818Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig97 47636..47818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791123.2196012-UTR-D-mesarthrocarpus_Contig97:47818..478421680791123.2196012-UTR-D-mesarthrocarpus_Contig97:47818..47842Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig97 47819..47842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig97.11.2prot_D-mesarthrocarpus_Contig97.11.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig97 44251..47818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig97.11.2

>prot_D-mesarthrocarpus_Contig97.11.2 ID=prot_D-mesarthrocarpus_Contig97.11.2|Name=mRNA_D-mesarthrocarpus_Contig97.11.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=619bp
MVSASVNLSVATLDGLIGCMYIVPVRMEAAMTLYYASCTNGDACGAHSSG
ADLIMERGGMEAIVHVLDSSITPIDRGVVGAGEKGYFRPHELEPGEVSLR
LWLCATLRQLLLSRPGAASALVALQGVTSLCQVIAADREDVAGYASAALA
AAARAEAPGFGSEGVAEAAVKAGVTSHLIATLTGSDPRAWGSNHGAAPGA
PQGGSRGIRIKDHPNPRQAAGAMDLLSILASRPGLAGQLYKAGVGPVSAS
WLAVLEEGMALEPTVKAVLQGALVTLTGLLSGLSGTAEGKALAAELSSLG
SVHWVLALLLRKDPVMTRLASSLILGLLSCSPMASTGSTRGIPREMVAMG
YLAGLWATITAISSSGARSPSALRSSVEESALSPVNTPLMALARLLSHPE
VMVSRASGEPALALVAEGGAVRILVQDYIAPGITDMHMGPGSGVKVNSAS
GGDPSTPEHLLSIALATSALLTFHGLAGSIEPSVHGLMLAVAGVDDLDTS
SLTPANPSSSGSNSTPATSWDIVASSLGAAMDFAQNRGMLGTGTGTGAEA
VEAALLAMGSVCGAPPLPRGMPAATLERLLPQYGDRAGGPSCTAAGCSRQ
ALSLGSTAVQLLGSKDYVP
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mRNA from alignment at D-mesarthrocarpus_Contig97:44251..47842-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig97.11.2 ID=mRNA_D-mesarthrocarpus_Contig97.11.2|Name=mRNA_D-mesarthrocarpus_Contig97.11.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3592bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig97:44251..47842- (Discosporangium mesarthrocarpum MT17_79)
AAGCAGGGAGGGGTATCTCAGGGCATGGTGTCAGCATCAGTCAATCTCTC
TGTGGCAACCCTTGACGGCTTGATTGGGTGCATGTACATAGTCCCTGTCC
GCATGGAGGCTGCGATGACCCTGTACTATGCCTCATGCACCAACGGTGAT
GCCTGTGGCGCCCATAGCTCCGGGGCGGATCTAATAATGGAGAGGGGGGG
AATGGAGGTAGGAAATACTGGAGCGCCCCGGTGTAGAGAGATGGAGAGGG
CTTGATGGATTCCAATGGAATATTGTTCATGGGGGAAGCTTAGGGTTAGG
GGATATGTAGGTGTTTCCAGGAGGAAGGGTGAGATTTTGTGGATCTTAAG
GGGGGGGCGGCTCAGTCCTCCTTGGGTTGGGTCCTGTCTCAAAGTGTAGG
TGACGGGGCAAGAATATGGTTAGGGGTGAGGGGAAGGAGAGGCCAGGGAC
AAGAAGTACTTAGGGTTAGGGTTAGTCAAGGCGTTGTGCAGCCTGCTTTT
GCCTCTCTTGGACAAGGGCAGACCACTCCACCTGATGGCTCCGTAAAATT
ATTGGTCCAGTTGGGCCCACATCTGTTCAACGCACCCCAAGACCACTGCT
ACCTCTGCACTGTTGTAAGTGATATAAACAAACCGTCTGTTGTTACTGTT
GTAAATGATGTAAACAAACCATCTGTTGTAACTGTTGTAACTGTTGTAAC
TGATGTACTGTTGCCAAGGCCATCGTGCATGTGCTAGACTCCTCCATCAC
CCCAATCGACAGAGGGGTGGTGGGAGCAGGGGAAAAGGGCTACTTCAGAC
CCCATGAACTGGAGCCAGGAGAGGTGTCCCTCCGACTGTGGCTGTGCGCC
ACCCTCCGCCAGCTGCTCCTGAGCCGCCCCGGGGCAGCTTCAGCTCTGGT
GGCACTCCAGGGCGTGACATCACTGTGCCAGGTCATAGCGGCAGATAGGG
AGGATGTGGCAGGTTACGCTTCTGCAGCACTGGCGGCAGCAGCAAGGGCA
GAGGCTCCGGGGTTCGGGTCAGAAGGTGTGGCAGAGGCTGCAGTGAAGGT
GTGTTAGGGGTTGGGGTTGGGGTTTCATTTTCATGCTCAGAAAAAAGCTC
TGGGGGTACATGGGGTGAAGGGGGGTAGCAGGGGGGGAAGAAGAGGGATA
GGGTGGGTTGCAGCACCAGAGAAGGAGAGAAACTGGTTAGGATCCGAGGT
TGAGTGGTTGGGTTGCTTCACTGCCTTATATTTCTGCCCGGTTTAGGCAG
TGGATACAAGGGTCTTGTGTGCACCTGAGTAACCTTTTTTTCTTTTTCCT
GTGATACTGGAAGCCAGGCTGTCAAGTTTGAGAGAGGGGTGGGTAAAGAG
TCAGGGGTCTTCTTGGTCAAGCTCCTCTTTGTCTTGTGCTTGTTGACGGT
CTCAAACTAGCCCTAACCCTAGCCCTAACCCTAGGTAAAGCATAGCAGTT
GCCACAGTGGTAGTTAGGGTTAGGGTTACGGTTAGGGTTTCATTCATGCC
TTGAAGTGCAGCACAGCATCTCGAAGTGGTGACATGCCCACAGGACCCTT
CATGTTGGTTTTAACCTTGACTCATGCTGCAGTGATCTGCTGTAACACCC
TGTTGTCGAGAGAGCGAACACGGTATGGTAAACCTCTAGTCCACCCTCCC
AAAAAGTGTGGCCGGGGCAAGATGGCTCTCTGAGGAGACCATGTAGCCAG
TTTTTGGTTTCCCTCAATCAAAGGCACGCCCTCATCCCCTATCCCCAGCC
CCAGCCCCAGCCCACCCATGGCTACATGTCCACCATAACCCCCCTGGAAT
GTCTTCCTAAATTTCATAAACTTCTCTGTTTTTCTCACACACACAAGGCC
GGGGTGACCAGTCATCTCATCGCCACCCTCACAGGGAGTGACCCCAGGGC
CTGGGGTAGCAACCATGGGGCAGCCCCTGGGGCGCCCCAGGGTGGAAGCA
GGGGCATCAGAATCAAGGACCACCCCAACCCCCGCCAAGCGGCAGGGGCG
ATGGACCTTCTTTCCATTCTGGCGTCAAGGCCAGGGCTGGCAGGTCAGCT
CTACAAAGCTGGGGTGGGGCCAGTGTCGGCAAGTTGGCTGGCGGTTTTGG
AAGAAGGCATGGCACTGGAGCCAACGGTGAAGGCGGTGCTGCAGGGGGCG
CTGGTGACACTGACGGGCCTGCTGAGTGGTCTGAGTGGGACCGCTGGTGA
GTGTTGGTTGTGGGCTGGGTTCATTGTTGATGGTTCTATGAGGTTTAGGG
TTGCCAGGTAGGGTTGGGGTCAGTCAGGCATCGCATGGGTGGCAGATGAG
GCTTAGGGTAGTTGGTTTTAGACCTTGCTTGCTCAGCCAACAGTGGAGCC
TCATGACCAAGAATTTGATAATTGTGTGTTCAAGTGCCTCTTCCCATAGA
TGCCACCCCAGGACTTTGGGGAAAGCTGCCAAGTCCAGCCCAGCCCACCC
CAGCCCAGCCCACCTCCTTGGCACAAGACCCTTCTCCTTCCCTGCACCAA
CTGACTACACCCACTAATACAAGTTTTGACACGCACATGCACAGGTGCCA
CAGTACCTTACCCATAGTTCTGACGCCCCCCTGCTCCTTTCTACCAGAGG
GGAAGGCACTGGCAGCAGAGCTGTCCTCTCTGGGCTCAGTCCACTGGGTG
TTGGCCCTCTTGCTGCGCAAGGACCCTGTGATGACAAGGCTTGCCTCAAG
CCTGATCCTGGGGCTCTTGTCCTGCAGCCCCATGGCCAGCACGGGATCGA
CAAGGGGCATACCTAGAGAAATGGTGGCCATGGGCTACTTGGCTGGGCTC
TGGGCCACGATCACGGCCATCTCTAGCTCTGGAGCACGATCCCCATCAGC
CCTCAGAAGCTCCGTGGAGGAAAGTGCTCTTTCTCCGGTAAACACACCCC
TCATGGCCCTGGCAAGGCTCCTGAGCCACCCAGAGGTTATGGTCTCCAGG
GCGTCTGGGGAACCGGCCCTGGCCCTTGTGGCTGAGGGGGGTGCCGTGAG
GATCTTGGTGCAGGACTACATTGCACCTGGCATCACAGACATGCACATGG
GGCCTGGCTCTGGTGTCAAGGTCAATAGCGCTAGTGGCGGGGACCCCTCC
ACCCCAGAGCACCTGCTGTCAATTGCGCTGGCAACATCTGCACTCCTGAC
CTTCCACGGGCTGGCTGGGTCCATTGAACCCTCTGTCCATGGCCTCATGC
TGGCTGTGGCAGGGGTGGACGACCTTGACACATCCTCTTTGACCCCCGCC
AACCCATCCAGTAGTGGTAGCAACAGCACCCCAGCCACATCCTGGGACAT
TGTGGCCTCCAGTCTAGGGGCCGCTATGGATTTTGCCCAGAACAGAGGCA
TGCTGGGGACAGGGACTGGGACAGGGGCAGAGGCAGTTGAAGCGGCACTC
CTGGCAATGGGAAGCGTTTGTGGGGCACCACCACTGCCCCGGGGCATGCC
TGCCGCTACCCTGGAGCGCCTGCTGCCACAGTATGGGGATCGAGCCGGGG
GACCTTCCTGCACTGCAGCAGGGTGCTCTAGGCAGGCTCTGAGTCTGGGC
TCCACGGCAGTTCAGCTCCTGGGCAGCAAGGATTATGTTCCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig97:44251..47842-

>mRNA_D-mesarthrocarpus_Contig97.11.2 ID=mRNA_D-mesarthrocarpus_Contig97.11.2|Name=mRNA_D-mesarthrocarpus_Contig97.11.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1857bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig97:44251..47842- (Discosporangium mesarthrocarpum MT17_79)
ATGGTGTCAGCATCAGTCAATCTCTCTGTGGCAACCCTTGACGGCTTGAT
TGGGTGCATGTACATAGTCCCTGTCCGCATGGAGGCTGCGATGACCCTGT
ACTATGCCTCATGCACCAACGGTGATGCCTGTGGCGCCCATAGCTCCGGG
GCGGATCTAATAATGGAGAGGGGGGGAATGGAGGCCATCGTGCATGTGCT
AGACTCCTCCATCACCCCAATCGACAGAGGGGTGGTGGGAGCAGGGGAAA
AGGGCTACTTCAGACCCCATGAACTGGAGCCAGGAGAGGTGTCCCTCCGA
CTGTGGCTGTGCGCCACCCTCCGCCAGCTGCTCCTGAGCCGCCCCGGGGC
AGCTTCAGCTCTGGTGGCACTCCAGGGCGTGACATCACTGTGCCAGGTCA
TAGCGGCAGATAGGGAGGATGTGGCAGGTTACGCTTCTGCAGCACTGGCG
GCAGCAGCAAGGGCAGAGGCTCCGGGGTTCGGGTCAGAAGGTGTGGCAGA
GGCTGCAGTGAAGGCCGGGGTGACCAGTCATCTCATCGCCACCCTCACAG
GGAGTGACCCCAGGGCCTGGGGTAGCAACCATGGGGCAGCCCCTGGGGCG
CCCCAGGGTGGAAGCAGGGGCATCAGAATCAAGGACCACCCCAACCCCCG
CCAAGCGGCAGGGGCGATGGACCTTCTTTCCATTCTGGCGTCAAGGCCAG
GGCTGGCAGGTCAGCTCTACAAAGCTGGGGTGGGGCCAGTGTCGGCAAGT
TGGCTGGCGGTTTTGGAAGAAGGCATGGCACTGGAGCCAACGGTGAAGGC
GGTGCTGCAGGGGGCGCTGGTGACACTGACGGGCCTGCTGAGTGGTCTGA
GTGGGACCGCTGAGGGGAAGGCACTGGCAGCAGAGCTGTCCTCTCTGGGC
TCAGTCCACTGGGTGTTGGCCCTCTTGCTGCGCAAGGACCCTGTGATGAC
AAGGCTTGCCTCAAGCCTGATCCTGGGGCTCTTGTCCTGCAGCCCCATGG
CCAGCACGGGATCGACAAGGGGCATACCTAGAGAAATGGTGGCCATGGGC
TACTTGGCTGGGCTCTGGGCCACGATCACGGCCATCTCTAGCTCTGGAGC
ACGATCCCCATCAGCCCTCAGAAGCTCCGTGGAGGAAAGTGCTCTTTCTC
CGGTAAACACACCCCTCATGGCCCTGGCAAGGCTCCTGAGCCACCCAGAG
GTTATGGTCTCCAGGGCGTCTGGGGAACCGGCCCTGGCCCTTGTGGCTGA
GGGGGGTGCCGTGAGGATCTTGGTGCAGGACTACATTGCACCTGGCATCA
CAGACATGCACATGGGGCCTGGCTCTGGTGTCAAGGTCAATAGCGCTAGT
GGCGGGGACCCCTCCACCCCAGAGCACCTGCTGTCAATTGCGCTGGCAAC
ATCTGCACTCCTGACCTTCCACGGGCTGGCTGGGTCCATTGAACCCTCTG
TCCATGGCCTCATGCTGGCTGTGGCAGGGGTGGACGACCTTGACACATCC
TCTTTGACCCCCGCCAACCCATCCAGTAGTGGTAGCAACAGCACCCCAGC
CACATCCTGGGACATTGTGGCCTCCAGTCTAGGGGCCGCTATGGATTTTG
CCCAGAACAGAGGCATGCTGGGGACAGGGACTGGGACAGGGGCAGAGGCA
GTTGAAGCGGCACTCCTGGCAATGGGAAGCGTTTGTGGGGCACCACCACT
GCCCCGGGGCATGCCTGCCGCTACCCTGGAGCGCCTGCTGCCACAGTATG
GGGATCGAGCCGGGGGACCTTCCTGCACTGCAGCAGGGTGCTCTAGGCAG
GCTCTGAGTCTGGGCTCCACGGCAGTTCAGCTCCTGGGCAGCAAGGATTA
TGTTCCC
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