mRNA_D-mesarthrocarpus_Contig97.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig97.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig97.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig97.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig97contigD-mesarthrocarpus_Contig97:150..2063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1450
Hectar predicted targeting categoryother localisation
Exons2
Cds size1449
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791122.3089147-CDS-D-mesarthrocarpus_Contig97:149..3481680791122.3089147-CDS-D-mesarthrocarpus_Contig97:149..348Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig97 150..348 -
1680791122.3223977-CDS-D-mesarthrocarpus_Contig97:813..20631680791122.3223977-CDS-D-mesarthrocarpus_Contig97:813..2063Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig97 814..2063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig97.1.1prot_D-mesarthrocarpus_Contig97.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig97 150..2063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig97.1.1

>prot_D-mesarthrocarpus_Contig97.1.1 ID=prot_D-mesarthrocarpus_Contig97.1.1|Name=mRNA_D-mesarthrocarpus_Contig97.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=483bp
MRSREGQQSRPRSHLSAEQSTGGAGEMHGSLVGGGTHDAKYTFPMVDHQS
GVSLVSSPQDREWDKVDETEGAGEGGGRDPGDQAGVGAGVTEGLNSQGQG
QAVGDRDEKEDEEEERADRLDGMDNLIGRMAEVEERLQSKLERNAAPWNT
PNPGWEASGVMKFTSMDTVSAEAGAIRLDGKGSEATSEEVEKRVGCGDSG
KDFRPGPEGRGAKAGTGTGRSRLRRGRSKGRVRASKGSQVSESLVAPTVS
SSNKARCTVGGRNYLKGRRSRSTGEGGRGRFDGVSHDQDTIASRSCENTP
MEIRAADQGATRQPSDLLRASEDDYRSPRANHELKTVGKRGPKCGHDVAP
GYVPPVASETQAADRDVGGDRGGRDTYEEKDETWVVEGQGGHEGVVYNER
WKHDIGGTREVNAGSYGDHTSTPAQSDSPRNSGDKSKMRISSSRQRPLST
ADSAAREARRMQRLNEELSAVVEQLHGANLSGE
back to top

mRNA from alignment at D-mesarthrocarpus_Contig97:150..2063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig97.1.1 ID=mRNA_D-mesarthrocarpus_Contig97.1.1|Name=mRNA_D-mesarthrocarpus_Contig97.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1914bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig97:150..2063- (Discosporangium mesarthrocarpum MT17_79)
ATGAGGAGCAGGGAGGGCCAGCAATCCCGCCCCAGATCACATTTGTCCGC
TGAGCAGAGCACAGGAGGGGCAGGGGAGATGCATGGGAGTCTTGTTGGGG
GTGGGACGCATGATGCCAAGTATACTTTCCCTATGGTCGACCATCAATCG
GGTGTAAGCCTTGTCTCTTCCCCTCAGGATAGGGAGTGGGATAAGGTGGA
TGAGACAGAGGGAGCAGGTGAGGGAGGAGGAAGAGACCCTGGAGACCAAG
CAGGGGTGGGTGCTGGTGTTACGGAGGGGTTGAACAGTCAGGGGCAGGGG
CAGGCGGTGGGGGACCGGGATGAGAAGGAGGACGAGGAAGAAGAGAGAGC
CGATCGACTGGACGGGATGGACAACCTGATTGGACGCATGGCGGAGGTGG
AGGAACGTCTTCAGTCAAAGCTGGAGAGGAATGCTGCTCCGTGGAACACC
CCCAACCCTGGGTGGGAGGCAAGTGGAGTGATGAAGTTTACCTCCATGGA
CACCGTGTCCGCCGAGGCAGGTGCCATTAGGTTGGATGGCAAGGGTTCGG
AAGCAACAAGTGAAGAAGTGGAAAAGAGGGTTGGGTGTGGGGATAGCGGC
AAGGATTTCAGGCCGGGGCCCGAGGGGCGAGGAGCAAAGGCTGGCACAGG
GACAGGGAGGAGTAGGCTCAGACGGGGCAGGAGCAAGGGCAGGGTTCGGG
CCAGCAAGGGGAGTCAGGTTTCAGAGAGTTTGGTTGCACCGACGGTGAGC
AGCAGCAATAAGGCACGCTGCACAGTGGGGGGCAGGAACTACCTAAAGGG
CAGAAGATCCAGGTCCACAGGGGAGGGGGGGCGGGGCAGGTTTGATGGAG
TCTCTCATGATCAGGATACTATAGCGTCGAGATCTTGTGAGAACACCCCC
ATGGAGATAAGAGCAGCTGATCAAGGGGCCACACGGCAGCCGAGTGATCT
CCTCAGAGCCAGCGAGGATGACTACAGGTCGCCCAGAGCTAACCATGAAC
TTAAGACTGTTGGCAAACGGGGGCCGAAGTGCGGTCACGATGTAGCTCCT
GGGTATGTCCCGCCGGTGGCCTCAGAGACACAGGCGGCAGATAGGGACGT
TGGTGGAGATAGGGGGGGCAGGGATACCTACGAGGAAAAAGACGAAACCT
GGGTCGTGGAGGGACAGGGTGGGCATGAAGGAGTTGTGTACAATGAAAGA
TGGAAGCATGACATTGGTGGAACAAGAGAAGTCAATGCTGGTTCATATGG
GTGAGTTCGACAGGATGGTTATTGAGGTTATTTTCATACTTCAAAGTATT
TTGGCATTGGATTTGGGAAGGCTTTGTACTGCCTACCCCCAACCCCCCGG
GAAGTCATTGTATTTTCTCCAAGCATATTGGTGCTGTGCGTTGATGAGGC
TTCCAGACGCCGTTGCTCCCCTGCTTTGTCCCGTGCTTTGACCTCTTTCC
CTAAAGCATTACACTGTGCCGCACAGCTGATCTCTGACCTTCTGTGCAGA
GGTATGCGCCGAATTACTTCAACCTGCTCCGAAATATTGTAGAGCTGAAT
CACGACAGTAACAGAAAATGCCCCTTCCCTCCCTAGACTTTTCCTTGAGA
TGCACGGTAACGGCAGTCAGCTAGAATGCCAGCCATCGAATGCTCCTCTC
CCCTCTCCCACTCCTACGCCACGTCACTTGACCAAATCCAGCCCGCGTGA
TTACCATCACCCCAGTGACCACACGTCAACTCCGGCACAAAGCGACAGCC
CCCGAAACTCGGGAGACAAGTCTAAGATGCGGATAAGTTCGTCAAGGCAG
AGGCCTCTGTCTACAGCGGACTCCGCTGCGCGAGAAGCCCGGCGCATGCA
GAGGCTCAACGAGGAGCTTTCAGCCGTGGTGGAGCAGCTTCATGGGGCCA
ACCTGTCTGGAGAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig97:150..2063-

>mRNA_D-mesarthrocarpus_Contig97.1.1 ID=mRNA_D-mesarthrocarpus_Contig97.1.1|Name=mRNA_D-mesarthrocarpus_Contig97.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1449bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig97:150..2063- (Discosporangium mesarthrocarpum MT17_79)
ATGAGGAGCAGGGAGGGCCAGCAATCCCGCCCCAGATCACATTTGTCCGC
TGAGCAGAGCACAGGAGGGGCAGGGGAGATGCATGGGAGTCTTGTTGGGG
GTGGGACGCATGATGCCAAGTATACTTTCCCTATGGTCGACCATCAATCG
GGTGTAAGCCTTGTCTCTTCCCCTCAGGATAGGGAGTGGGATAAGGTGGA
TGAGACAGAGGGAGCAGGTGAGGGAGGAGGAAGAGACCCTGGAGACCAAG
CAGGGGTGGGTGCTGGTGTTACGGAGGGGTTGAACAGTCAGGGGCAGGGG
CAGGCGGTGGGGGACCGGGATGAGAAGGAGGACGAGGAAGAAGAGAGAGC
CGATCGACTGGACGGGATGGACAACCTGATTGGACGCATGGCGGAGGTGG
AGGAACGTCTTCAGTCAAAGCTGGAGAGGAATGCTGCTCCGTGGAACACC
CCCAACCCTGGGTGGGAGGCAAGTGGAGTGATGAAGTTTACCTCCATGGA
CACCGTGTCCGCCGAGGCAGGTGCCATTAGGTTGGATGGCAAGGGTTCGG
AAGCAACAAGTGAAGAAGTGGAAAAGAGGGTTGGGTGTGGGGATAGCGGC
AAGGATTTCAGGCCGGGGCCCGAGGGGCGAGGAGCAAAGGCTGGCACAGG
GACAGGGAGGAGTAGGCTCAGACGGGGCAGGAGCAAGGGCAGGGTTCGGG
CCAGCAAGGGGAGTCAGGTTTCAGAGAGTTTGGTTGCACCGACGGTGAGC
AGCAGCAATAAGGCACGCTGCACAGTGGGGGGCAGGAACTACCTAAAGGG
CAGAAGATCCAGGTCCACAGGGGAGGGGGGGCGGGGCAGGTTTGATGGAG
TCTCTCATGATCAGGATACTATAGCGTCGAGATCTTGTGAGAACACCCCC
ATGGAGATAAGAGCAGCTGATCAAGGGGCCACACGGCAGCCGAGTGATCT
CCTCAGAGCCAGCGAGGATGACTACAGGTCGCCCAGAGCTAACCATGAAC
TTAAGACTGTTGGCAAACGGGGGCCGAAGTGCGGTCACGATGTAGCTCCT
GGGTATGTCCCGCCGGTGGCCTCAGAGACACAGGCGGCAGATAGGGACGT
TGGTGGAGATAGGGGGGGCAGGGATACCTACGAGGAAAAAGACGAAACCT
GGGTCGTGGAGGGACAGGGTGGGCATGAAGGAGTTGTGTACAATGAAAGA
TGGAAGCATGACATTGGTGGAACAAGAGAAGTCAATGCTGGTTCATATGG
TGACCACACGTCAACTCCGGCACAAAGCGACAGCCCCCGAAACTCGGGAG
ACAAGTCTAAGATGCGGATAAGTTCGTCAAGGCAGAGGCCTCTGTCTACA
GCGGACTCCGCTGCGCGAGAAGCCCGGCGCATGCAGAGGCTCAACGAGGA
GCTTTCAGCCGTGGTGGAGCAGCTTCATGGGGCCAACCTGTCTGGAGAG
back to top