mRNA_D-mesarthrocarpus_Contig9699.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9699.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9699.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: A0A835YU39_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU39_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.810e-29
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNV 201
            IP+TLLLRN E+AEHIN HHEHPTYLKGIKLP HI ATTDAK AL DATY+IHAVPVQY+R+FL+ V
Sbjct:   28 IPSTLLLRNAEIAEHINVHHEHPTYLKGIKLPWHIRATTDAKDALQDATYVIHAVPVQYSRAFLKKV 94          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: D7FSV6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV6_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.310e-24
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNV 201
            IPTTLL+R+  VAEH+N+H+EHP YLKGIKLP HI AT D K+AL DAT++IHAVPVQYTR FL NV
Sbjct:  306 IPTTLLVRSDSVAEHVNKHNEHPNYLKGIKLPQHIVATADPKEALRDATFVIHAVPVQYTRKFLENV 372          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: B8BQG6_THAPS (Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQG6_THAPS)

HSP 1 Score: 92.0 bits (227), Expect = 1.530e-20
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNVRGE 210
            +PTTLL+R+ +VA HIN +H HP Y+  I LP  + AT D K ALSDATYIIHAVPVQYTR FL +V+ +
Sbjct:   38 VPTTLLVRSEDVASHINENHRHPRYMSDICLPRMVRATCDKKSALSDATYIIHAVPVQYTREFLNSVKDD 107          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: A0A7S3V808_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V808_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.680e-19
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNVR 204
            IPTTLL+R+ ++A+ +N  H HP Y+  I LP  IHAT D + ALSDATYIIHAVPVQ+TR FL +V+
Sbjct:  114 IPTTLLIRDQDIADQLNLEHRHPRYMSDISLPKMIHATADPESALSDATYIIHAVPVQFTRKFLDSVK 181          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: A0A7S1MYH6_HEMAN (Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MYH6_HEMAN)

HSP 1 Score: 88.6 bits (218), Expect = 1.770e-19
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNVR 204
            IP T+L+R  E+A+ +N+ H HP YL G++LP  I+AT+D  +A  DATYI+HAVPVQY+R FLRNV+
Sbjct:   87 IPVTILVRRQEIADILNKDHSHPNYLNGMELPKLIYATSDGSEAFKDATYILHAVPVQYSRDFLRNVK 154          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: B7FQ11_PHATC (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ11_PHATC)

HSP 1 Score: 89.0 bits (219), Expect = 2.030e-19
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNVR 204
            IPTTLL+R+ ++A+ IN +H HP Y+K I LP  I AT+D +KALSDATYI+HAVPVQY+R+FL +V+
Sbjct:   34 IPTTLLVRSDDIAQSINTNHTHPRYMKDIVLPARIRATSDPEKALSDATYIVHAVPVQYSRAFLDSVK 101          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: A0A7S3Q1I8_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1I8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.640e-19
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNVR 204
            IPTTLL+R+ ++A+ +N  H HP Y+  I LP  IHAT D + ALSDATYIIHAVPVQ+TR FL +V+
Sbjct:  114 IPTTLLIRDQDIADQLNLEHRHPRYMSDISLPKMIHATADPESALSDATYIIHAVPVQFTRKFLDSVK 181          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: A0A7S2PMM1_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PMM1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 9.870e-19
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNVRGE 210
            +P TLL+R  EVAE IN +H HP Y+  I LP  + AT + K ALSDATYIIHAVPVQYTR +L  V+ E
Sbjct:   90 VPVTLLVRTEEVAEEINENHRHPRYMTDIALPRTVRATANKKTALSDATYIIHAVPVQYTREYLATVKDE 159          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: K0TJ00_THAOC (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJ00_THAOC)

HSP 1 Score: 87.4 bits (215), Expect = 1.520e-18
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNV 201
            +PTTLL+R+ +VA  IN  H HPTY+  I LP  + ATT+   AL DATYIIHAVPVQYTR FLR+V
Sbjct:  172 VPTTLLVRSDDVARSINEKHRHPTYMSDIALPRTVRATTNKASALGDATYIIHAVPVQYTRQFLRSV 238          
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Match: A0A7S2V5B3_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5B3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.960e-18
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 IPTTLLLRNMEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQYTRSFLRNVR 204
            IPTT+L+R  EVA+ IN++  HP YLKG+ LP    ATTD ++AL+DAT+++HA+PVQ+TRSFL N R
Sbjct:   76 IPTTVLVRKQEVADSINKNRTHPVYLKGVTLPTGFTATTDPQEALADATFLVHAIPVQHTRSFLMNHR 143          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9699.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU39_9STRA4.810e-2980.60Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
D7FSV6_ECTSI1.310e-2473.13Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
B8BQG6_THAPS1.530e-2061.43Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragm... [more]
A0A7S3V808_9STRA1.680e-1960.29Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S1MYH6_HEMAN1.770e-1957.35Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragm... [more]
B7FQ11_PHATC2.030e-1961.76Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S3Q1I8_9STRA3.640e-1960.29Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S2PMM1_9STRA9.870e-1960.00Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragm... [more]
K0TJ00_THAOC1.520e-1862.69Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
A0A7S2V5B3_9STRA1.960e-1858.82Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9699contigD-mesarthrocarpus_Contig9699:3358..4468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSV6
PFAMsNAD_Gly3P_dh_C,NAD_Gly3P_dh_N
Model size210
Max annot lvl2759|Eukaryota
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.1e-20
EggNOG OGsCOG0240@1|root,KOG2711@2759|Eukaryota
Ec32 ortholog descriptionGlycerol-3-phosphate dehydrogenase
Ec32 orthologEc-19_001930.1
EC1.1.1.8
Descriptionglycerol-3-phosphate catabolic process
Cds size183
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791122.2538626-UTR-D-mesarthrocarpus_Contig9699:3357..33841680791122.2538626-UTR-D-mesarthrocarpus_Contig9699:3357..3384Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9699 3358..3384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791122.2692275-CDS-D-mesarthrocarpus_Contig9699:3384..34391680791122.2692275-CDS-D-mesarthrocarpus_Contig9699:3384..3439Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9699 3385..3439 +
1680791122.2796848-CDS-D-mesarthrocarpus_Contig9699:4340..44681680791122.2796848-CDS-D-mesarthrocarpus_Contig9699:4340..4468Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9699 4341..4468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9699.1.1prot_D-mesarthrocarpus_Contig9699.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9699 3385..4468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9699.1.1

>prot_D-mesarthrocarpus_Contig9699.1.1 ID=prot_D-mesarthrocarpus_Contig9699.1.1|Name=mRNA_D-mesarthrocarpus_Contig9699.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=61bp
MEVAEHINRHHEHPTYLKGIKLPHHIHATTDAKKALSDATYIIHAVPVQY
TRSFLRNVRGE
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mRNA from alignment at D-mesarthrocarpus_Contig9699:3358..4468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9699.1.1 ID=mRNA_D-mesarthrocarpus_Contig9699.1.1|Name=mRNA_D-mesarthrocarpus_Contig9699.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1111bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9699:3358..4468+ (Discosporangium mesarthrocarpum MT17_79)
ATACCGACAACTCTGCTACTCAGAAACATGGAGGTGGCTGAGCACATCAA CCGGCATCATGAACACCCTACCTACCTCAAGGGTAAGACTCGCACCTTTT AAACCTGCATCCCCCCTTCCTTTCCCCTGAAGCCTCTGAATCTCTTTTTG GTTACCCTGTGGCTTTCGGTGGGTCAGATGATGTGCACTGACACCGAACT GCCAAGCCATATCCCTGGTGCCAAAAGAAAAAAGCGCATTGAATAGAGCA CCCTCTGGAAGAGCGGTTCTGCCGTCGGAGCGCCTTGTGGATATCAGTGG CAATGGGGTTTAACCTAATCCTAACCCTAACCCTGCCAACCCTCCACGGC TGAAACATGTTCCTTTTTTTCTTTGTGAACCGGAGCGGCTTCTTGCTGCA ATGGAGACCATGCCCGTTGCTGTAGCTGCGGCTCCTTGCCGTGCCTAAGC TCAGACGGGTTTGCACACTGTGTTGGCCACGGGGGCGTGTCTTTTTTTTT TTTTCATACTTCTTTCGTTCGATTCTTTTCCGCAAGTATCCAGCACATCA CACGTACGCGCGGCCGAGGTGCATTAGTGTCAACGGTCTGGTAGCAGTGA CGGTGCTCTGGTAGCAGTGACGGTGCTCTGGTAGCAGTGAAGATGCTCTG GTAGCAGTGAAAAGCACAAGTGTCAGGCCGAAGTTGGGGTTTATCAGGAA CCCATCACGTGCTTGCCACAAGGGCGATGGAAACGGAGTAGCAGGAACCA GCAGAGACAAGGCAAGACAACCCTAACGCTACAGGCAAGTATTGAACAAG GGCCACTCAGAAGAGAGACTAGTGGAGGTCCCCCTCCTTTTTTGTCAAGC ATGACTGCAGCCATCCCTAACCCTTACCCTTACCCTCCCCCTCCTCGATC CTGTCAGTTCATCCCTGTCCCTTACCCTTGCTCCCCGCCTCCCCCCCCCT GTGCAACACCCCCCTCGGCCTCATCACCCCCAGGCATCAAGCTCCCTCAC CACATCCATGCCACCACCGATGCAAAGAAGGCCCTCAGTGATGCCACATA CATCATACATGCTGTGCCCGTTCAGTACACCAGGAGCTTCCTGAGAAATG TGAGGGGGGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9699:3358..4468+

>mRNA_D-mesarthrocarpus_Contig9699.1.1 ID=mRNA_D-mesarthrocarpus_Contig9699.1.1|Name=mRNA_D-mesarthrocarpus_Contig9699.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=183bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9699:3358..4468+ (Discosporangium mesarthrocarpum MT17_79)
ATGGAGGTGGCTGAGCACATCAACCGGCATCATGAACACCCTACCTACCT
CAAGGGCATCAAGCTCCCTCACCACATCCATGCCACCACCGATGCAAAGA
AGGCCCTCAGTGATGCCACATACATCATACATGCTGTGCCCGTTCAGTAC
ACCAGGAGCTTCCTGAGAAATGTGAGGGGGGAG
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