mRNA_D-mesarthrocarpus_Contig968.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig968.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig968.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig968.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig968contigD-mesarthrocarpus_Contig968:662..1144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog29760.VIT_04s0008g04840.t01
PFAMsABC2_membrane,ABC_tran
Model size399
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.79e-09
EggNOG OGsCOG1131@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG0065@2759|Eukaryota,37P62@33090|Viridiplantae,3GB0P@35493|Streptophyta
DescriptionBelongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily
Cds size399
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791120.6105933-CDS-D-mesarthrocarpus_Contig968:661..9061680791120.6105933-CDS-D-mesarthrocarpus_Contig968:661..906Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig968 662..906 -
1680791120.6217585-CDS-D-mesarthrocarpus_Contig968:990..11441680791120.6217585-CDS-D-mesarthrocarpus_Contig968:990..1144Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig968 991..1144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig968.2.1prot_D-mesarthrocarpus_Contig968.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig968 662..1144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig968.2.1

>prot_D-mesarthrocarpus_Contig968.2.1 ID=prot_D-mesarthrocarpus_Contig968.2.1|Name=mRNA_D-mesarthrocarpus_Contig968.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=133bp
MCSFHGPCFHCGRAGHKKEVCKARKAGQAQMTNGGSRQPSNRCGGLGSGN
GETPYEIWCSDTGATCHMTNDDAYMTNFEECDEVITSAFGNEARVLGYGS
LELAHFIPGYKYVVVNLTSVAYYPDLKINLLSG
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mRNA from alignment at D-mesarthrocarpus_Contig968:662..1144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig968.2.1 ID=mRNA_D-mesarthrocarpus_Contig968.2.1|Name=mRNA_D-mesarthrocarpus_Contig968.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=483bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig968:662..1144- (Discosporangium mesarthrocarpum MT17_79)
ATGTGCTCTTTCCACGGGCCGTGTTTCCACTGCGGCCGAGCTGGACATAA
AAAGGAGGTATGCAAAGCTCGCAAAGCAGGGCAGGCTCAGATGACGAACG
GAGGTAGCCGACAACCAAGCAACCGATGTGGAGGATTGGGGTCTGGCAAC
GGGGGTGGAAATCTGCCAACTGGGCGATTCACACACGCTCTGGTGACAAT
TGGACAGCCTCGTCGCCGAGTCAATCAGGTGGGCGGAGAAACCCCATATG
AGATTTGGTGTTCAGATACTGGTGCAACTTGCCACATGACAAATGACGAT
GCATATATGACCAACTTCGAGGAGTGCGATGAAGTTATAACATCCGCTTT
CGGAAATGAAGCTCGAGTTCTAGGATACGGATCCCTTGAGCTGGCCCATT
TTATACCGGGGTACAAATATGTGGTCGTAAACCTGACGTCAGTCGCATAC
TACCCTGATCTGAAGATCAATCTTCTTTCGGGT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig968:662..1144-

>mRNA_D-mesarthrocarpus_Contig968.2.1 ID=mRNA_D-mesarthrocarpus_Contig968.2.1|Name=mRNA_D-mesarthrocarpus_Contig968.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=399bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig968:662..1144- (Discosporangium mesarthrocarpum MT17_79)
ATGTGCTCTTTCCACGGGCCGTGTTTCCACTGCGGCCGAGCTGGACATAA
AAAGGAGGTATGCAAAGCTCGCAAAGCAGGGCAGGCTCAGATGACGAACG
GAGGTAGCCGACAACCAAGCAACCGATGTGGAGGATTGGGGTCTGGCAAC
GGGGAAACCCCATATGAGATTTGGTGTTCAGATACTGGTGCAACTTGCCA
CATGACAAATGACGATGCATATATGACCAACTTCGAGGAGTGCGATGAAG
TTATAACATCCGCTTTCGGAAATGAAGCTCGAGTTCTAGGATACGGATCC
CTTGAGCTGGCCCATTTTATACCGGGGTACAAATATGTGGTCGTAAACCT
GACGTCAGTCGCATACTACCCTGATCTGAAGATCAATCTTCTTTCGGGT
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