mRNA_D-mesarthrocarpus_Contig967.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig967.1.1
Unique Name	mRNA_D-mesarthrocarpus_Contig967.1.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig967.1.1 vs. uniprot
Match: D7G6X5_ECTSI (Separase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X5_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.830e-20
Identity = 56/114 (49.12%), Postives = 70/114 (61.40%), Query Frame = 1

Query:  232 EGVDVLRHLRDHLERTRQSISAANSSEARLRVIAHNHAKGLLKIAQHGLRNTTGGTELLSLVCNALHILLSLSSHVGVSDLTMEKLWYQALARSIDLGEYRLGLMAAACLQRCL 573
            EG   ++ L  HL R R  +S  +S    L   A    KGLLKIAQ GLRNT GG E L L   A   LL LS  +  +DLTME+LWY+  +RS++LG++ LGL A+ACLQ CL
Sbjct:   34 EGEHAIKQLEAHLARVRLQVSKPHS----LGDAAKQEGKGLLKIAQAGLRNTAGGLEPLRLAYEASRSLLPLSPFISAADLTMERLWYKVASRSVELGDFLLGLRASACLQTCL 143

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig967.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig967.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G6X5_ECTSI	1.830e-20	49.12	Separase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-mesarthrocarpus_Contig967	contig	D-mesarthrocarpus_Contig967:21129..22127 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7G6X5
Preferred name	ESPL1
PFAMs	Peptidase_C50
Model size	575
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02365,ko:K11547
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000070,GO:0000212,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000793,GO:0000794,GO:0000819,GO:0000902,GO:0000910,GO:0000911,GO:0001775,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005886,GO:0005938,GO:0006508,GO:0006807,GO:0006810,GO:0006887,GO:0006915,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007063,GO:0007088,GO:0007098,GO:0007127,GO:0007143,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007338,GO:0007343,GO:0007346,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0009566,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009826,GO:0009888,GO:0009896,GO:0009948,GO:0009949,GO:0009952,GO:0009960,GO:0009987,GO:0010154,GO:0010467,GO:0010564,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0012501,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016485,GO:0016787,GO:0017156,GO:0017157,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030071,GO:0030141,GO:0030154,GO:0030496,GO:0030703,GO:0030997,GO:0031023,GO:0031331,GO:0031410,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032878,GO:0032879,GO:0032886,GO:0032940,GO:0032989,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033206,GO:0034613,GO:0040001,GO:0040007,GO:0040012,GO:0040038,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043901,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045055,GO:0045132,GO:0045143,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045875,GO:0045876,GO:0045931,GO:0046605,GO:0046903,GO:0048285,GO:0048316,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048589,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051046,GO:0051049,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051247,GO:0051276,GO:0051293,GO:0051301,GO:0051304,GO:0051306,GO:0051307,GO:0051321,GO:0051493,GO:0051604,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0051985,GO:0060467,GO:0060468,GO:0060471,GO:0060473,GO:0060560,GO:0060627,GO:0061062,GO:0061458,GO:0061640,GO:0061982,GO:0062033,GO:0065001,GO:0065007,GO:0070011,GO:0070013,GO:0070090,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0071944,GO:0072686,GO:0072687,GO:0080154,GO:0090068,GO:0097708,GO:0098590,GO:0098813,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:0140096,GO:1901564,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902410,GO:1902850,GO:1903046,GO:1903047,GO:1903052,GO:1903364,GO:1903530,GO:1905818,GO:1905820,GO:2000026,GO:2000114,GO:2000241,GO:2000242,GO:2001251,GO:2001252
Exons	3
Evalue	3e-21
EggNOG OGs	COG5155@1\|root,KOG1849@2759\|Eukaryota
EC	3.4.22.49
Description	meiotic chromosome separation
Cds size	573
COG category	DO
BRITE	ko00000,ko00001,ko01000,ko01002,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791119.9172664-CDS-D-mesarthrocarpus_Contig967:21128..21363	1680791119.9172664-CDS-D-mesarthrocarpus_Contig967:21128..21363	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig967 21129..21363 +
1680791119.9315581-CDS-D-mesarthrocarpus_Contig967:21502..21667	1680791119.9315581-CDS-D-mesarthrocarpus_Contig967:21502..21667	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig967 21503..21667 +
1680791119.943122-CDS-D-mesarthrocarpus_Contig967:21953..22126	1680791119.943122-CDS-D-mesarthrocarpus_Contig967:21953..22126	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig967 21954..22126 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig967.1.1	prot_D-mesarthrocarpus_Contig967.1.1	Discosporangium mesarthrocarpum MT17_79	polypeptide	D-mesarthrocarpus_Contig967 21129..22126 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig967:21129..22127+
coding sequence from alignment at D-mesarthrocarpus_Contig967:21129..22127+

protein sequence of mRNA_D-mesarthrocarpus_Contig967.1.1

>prot_D-mesarthrocarpus_Contig967.1.1 ID=prot_D-mesarthrocarpus_Contig967.1.1|Name=mRNA_D-mesarthrocarpus_Contig967.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=191bp
LIFELPCVLARWRLLLTTFDQSCASASMARPKAGSRSEILMKPGSAVKNV
GAVHGGDIDALVAHLSKLTIQPKPASTEGVDVLRHLRDHLERTRQSISAA
NSSEARLRVIAHNHAKGLLKIAQHGLRNTTGGTELLSLVCNALHILLSLS
SHVGVSDLTMEKLWYQALARSIDLGEYRLGLMAAACLQRCL

mRNA from alignment at D-mesarthrocarpus_Contig967:21129..22127+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig967.1.1 ID=mRNA_D-mesarthrocarpus_Contig967.1.1|Name=mRNA_D-mesarthrocarpus_Contig967.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=999bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig967:21129..22127+ (Discosporangium mesarthrocarpum MT17_79)
TTGATATTTGAGTTGCCATGTGTGCTGGCACGTTGGCGTCTCCTGCTAAC
AACCTTTGACCAGAGTTGCGCGAGCGCAAGTATGGCGAGACCCAAGGCTG
GATCTAGAAGTGAGATCCTGATGAAGCCGGGTTCCGCCGTTAAGAACGTG
GGAGCCGTTCATGGAGGAGATATAGATGCGCTCGTGGCCCATCTGTCCAA
GCTCACCATCCAGCCGAAGCCAGCGTCGACAGAAGGTAAGGAGCGGACTT
TGCACGATAATAAAAACCGAACCCAATCAGATGACAAACTCAACTCAGTT
TGGTGGTGGCGAAGCGCACCCAAGGGGACCAAGCACTTCGTTTCTGCCGT
TTTGGGCTCGATCATTGTTTTCAGGTGTCGACGTCCTCCGACACCTGCGA
GATCACCTGGAAAGGACGCGGCAATCCATATCAGCGGCCAATTCCTCCGA
GGCGAGACTTCGCGTGATTGCTCACAATCACGCTAAGGGTCTTTTAAAGA
TCGCCCAACATGGACTCAGAAACACAACCGGAGGAACAGGTGCACAAGTG
CTGACTTTGTGAGGGAGACCGGCCTAGAGCTTGACTAACCATGTCTTTTT
TTGCTCTCAGGGGAGCAGTTGGCAACGTTATGGGGATCTATGAAGTTGCA
GCTTGCGCGCCACCGATGACAAAAAAGGGACTGCTCTTCAATTTTTGGTT
TGGTTGATAAGAGCAATCTTTTTACGTCCTCGACCAGATCTACCGCAAAG
AGTGTGCCCTCCCAAAGACGGGTGCTGACTTTGATGCGAACGAACCCATC
CACCCTCTCTTCTTTCCTTCCTCAGAACTCCTTAGCCTTGTGTGCAATGC
CCTCCACATCCTCCTCTCACTGTCATCCCACGTCGGGGTGAGCGATCTCA
CGATGGAAAAGCTTTGGTACCAGGCGCTGGCTCGCAGCATAGACCTTGGC
GAGTACCGCCTGGGACTGATGGCAGCAGCTTGCCTCCAGAGGTGCCTGC

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig967:21129..22127+

>mRNA_D-mesarthrocarpus_Contig967.1.1 ID=mRNA_D-mesarthrocarpus_Contig967.1.1|Name=mRNA_D-mesarthrocarpus_Contig967.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=573bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig967:21129..22127+ (Discosporangium mesarthrocarpum MT17_79)
TTGATATTTGAGTTGCCATGTGTGCTGGCACGTTGGCGTCTCCTGCTAAC
AACCTTTGACCAGAGTTGCGCGAGCGCAAGTATGGCGAGACCCAAGGCTG
GATCTAGAAGTGAGATCCTGATGAAGCCGGGTTCCGCCGTTAAGAACGTG
GGAGCCGTTCATGGAGGAGATATAGATGCGCTCGTGGCCCATCTGTCCAA
GCTCACCATCCAGCCGAAGCCAGCGTCGACAGAAGGTGTCGACGTCCTCC
GACACCTGCGAGATCACCTGGAAAGGACGCGGCAATCCATATCAGCGGCC
AATTCCTCCGAGGCGAGACTTCGCGTGATTGCTCACAATCACGCTAAGGG
TCTTTTAAAGATCGCCCAACATGGACTCAGAAACACAACCGGAGGAACAG
AACTCCTTAGCCTTGTGTGCAATGCCCTCCACATCCTCCTCTCACTGTCA
TCCCACGTCGGGGTGAGCGATCTCACGATGGAAAAGCTTTGGTACCAGGC
GCTGGCTCGCAGCATAGACCTTGGCGAGTACCGCCTGGGACTGATGGCAG
CAGCTTGCCTCCAGAGGTGCCTG