mRNA_D-mesarthrocarpus_Contig9661.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9661.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9661.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: D8LLN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN3_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 3.910e-106
Identity = 173/224 (77.23%), Postives = 192/224 (85.71%), Query Frame = 1
Query:    1 PYRLMSASASRRLIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATEVAEAAKAG 672
            P R   A+    L + P V+ AL +G P+VALESTIISHGMP+PENL MAR VE+I+R  GAVPATVAVL GRPHVGL   QLE LA  GPRA KCSRRDLAVA++QGVDGATTVAAT+YLASLAGV+VFVTGG+GGVHRG E T D+SADLAELA+TP+VVVCAGVKS+LDIEKTLEVLETNGVPVVSLGTD+FPAFFSPSSGV SPLRLDT +EVA AAKAG
Sbjct:   28 PLRRCLAAWGSTLQIEPGVQRALEEGRPIVALESTIISHGMPYPENLAMARGVEDIIRERGAVPATVAVLQGRPHVGLTASQLESLAEAGPRARKCSRRDLAVALAQGVDGATTVAATSYLASLAGVKVFVTGGMGGVHRGAETTFDVSADLAELAQTPIVVVCAGVKSILDIEKTLEVLETNGVPVVSLGTDDFPAFFSPSSGVPSPLRLDTPSEVAAAAKAG 251          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: A0A150GKH1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GKH1_GONPE)

HSP 1 Score: 261 bits (668), Expect = 4.750e-84
Identity = 139/217 (64.06%), Postives = 169/217 (77.88%), Query Frame = 1
Query:   25 ASRRLI-VSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATEVAEAAKAG 672
            A  RLI VSPEV+ AL +G PVVALESTIISHGMP+P+NL  A +VE +VR  GA PAT+A++ G PH+G+   QLE +A  G    K SRRDL V +++ +DGATTV+ATA LA+LAG++VFVTGG+GGVHRGGEATMD+SADL EL RTPV VVCAG KS+LDI +TLEVLET GVPV + GTDEFPAFF+P SG ++P R+D+  E A    AG
Sbjct:    2 ADARLIRVSPEVQAALAEGRPVVALESTIISHGMPWPDNLATALEVEGVVRDSGATPATIAIIEGVPHIGMQRAQLEHIARRGTAVQKVSRRDLPVVIAKRLDGATTVSATAALAALAGIQVFVTGGIGGVHRGGEATMDVSADLTELGRTPVAVVCAGAKSILDIPRTLEVLETLGVPVAAYGTDEFPAFFTPRSGCQAPARVDSPKEAAALLDAG 218          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: A0A2J8A315_9CHLO (Pseudouridine-5'-phosphate glycosidase (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A315_9CHLO)

HSP 1 Score: 256 bits (653), Expect = 2.990e-83
Identity = 133/212 (62.74%), Postives = 164/212 (77.36%), Query Frame = 1
Query:   13 MSASASRRLIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATE 648
            MS   S  L +SPEV+ ALR G PVVALESTIISHGMP+P+NL  A +VE  VR  GA+PAT+A++AG PH+G+  + LE +A  G    K SRRDL V +++  DGATTV+ATA LA+LAG+ VFVTGG+GGVHRGGE+TMD+SADL E+ RTP+ VVCAG KS+LDI +TLEVLET GV V + GTDEFPAFF+P SG R+P R+D+  E
Sbjct:   11 MSGPDSGLLRISPEVQAALRSGQPVVALESTIISHGMPWPDNLATALEVEAEVRASGAIPATIAIIAGVPHIGMQREALEHIARRGVAVQKVSRRDLPVVIAKHADGATTVSATAALAALAGIHVFVTGGIGGVHRGGESTMDVSADLVEMGRTPIAVVCAGAKSILDIPRTLEVLETWGVAVAAYGTDEFPAFFTPRSGCRAPSRVDSPAE 222          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: A0A835Y3Q7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y3Q7_9CHLO)

HSP 1 Score: 259 bits (661), Expect = 5.980e-83
Identity = 133/206 (64.56%), Postives = 163/206 (79.13%), Query Frame = 1
Query:   37 LIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATEVA 654
            L VSPEV+ AL++G PVVALESTIISHGMP+P+NL  A +VE +VR  GAVPAT+A++ G PH+G+   QLE +A  G    K SRRDL V +++ +DGATTV+ATA LA+LAG+ VFVTGG+GGVHRGGE TMD+SADL EL RTP+ VVCAG KS+LDI +TLEVLET GV V + GTDEFPAFF+P SG R+P R+D+  E A
Sbjct:   10 LQVSPEVQAALQQGKPVVALESTIISHGMPWPDNLATALEVEAVVRESGAVPATIAIIQGVPHIGMQRAQLEHIARRGTAVQKVSRRDLPVVIAKRMDGATTVSATAALAALAGIHVFVTGGIGGVHRGGEVTMDVSADLTELGRTPIAVVCAGAKSILDIPRTLEVLETQGVAVAAYGTDEFPAFFTPRSGCRAPARVDSPEEAA 215          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: I0YT19_COCSC (Erwinia chrysanthemi IndA protein-like protein-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YT19_COCSC)

HSP 1 Score: 256 bits (653), Expect = 5.720e-82
Identity = 134/211 (63.51%), Postives = 165/211 (78.20%), Query Frame = 1
Query:   16 SASASRRLIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATE 648
            +A A++ +++S EV+ ALR+G  VVALESTIISHGMPFP+NLE AR VE++VR  GAVPAT+A+L G PHVGL ++QL  LAS   R  K SRRDL   M++ + GATTV+AT  LA+ AG+ +FVTGG+GGVHRGGE+TMD+SADL EL RTPV VVCAG KS+LDI +TLE LET GV V + G DEFPAFF+  SG R+PLR+DT  E
Sbjct:    6 AARAAQGIVLSAEVQRALREGTAVVALESTIISHGMPFPQNLETARAVEDVVRGQGAVPATIAILDGIPHVGLTDEQLHSLASQAHRVRKTSRRDLPYVMAKRLHGATTVSATMLLAARAGIHIFVTGGIGGVHRGGESTMDVSADLTELGRTPVAVVCAGAKSILDIPRTLEYLETQGVGVAAYGADEFPAFFTRRSGCRAPLRIDTPEE 216          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: A0A8J4D4U1_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4D4U1_9CHLO)

HSP 1 Score: 256 bits (654), Expect = 1.260e-81
Identity = 131/206 (63.59%), Postives = 162/206 (78.64%), Query Frame = 1
Query:   37 LIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATEVA 654
            L +SPEV+ AL +G P+VALESTII+HGMP+P+NL  A +VE +VR  GAVPAT+A++ G PH+G+  +QLE +A  G    K SRRDL V M++ +DGATTV+AT+ LA+LAG+ VFVTGG+GGVHRGGE  MDISADL EL RTP+ VVCAG KS+LDI +TLEVLET GV V S GT+EFPAFF+P SG RSP R+D+  E A
Sbjct:    6 LEISPEVQAALSEGRPIVALESTIITHGMPWPDNLSTALEVEEVVRASGAVPATIAIIKGVPHIGMQREQLEYIARNGTAVQKVSRRDLPVVMAKQLDGATTVSATSALAALAGIHVFVTGGIGGVHRGGEINMDISADLTELGRTPIAVVCAGAKSILDIPRTLEVLETWGVAVASYGTNEFPAFFTPRSGCRSPARVDSPAEAA 211          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: A0A8J9REA2_9CHLO (Pseudouridine-5'-phosphate glycosidase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REA2_9CHLO)

HSP 1 Score: 256 bits (653), Expect = 7.230e-81
Identity = 133/217 (61.29%), Postives = 167/217 (76.96%), Query Frame = 1
Query:   19 ASASRRLIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATEVAEAAKA 669
            ++ ++ ++V  EV+ ALR G  VVALESTIISHGMPFP+NLE AR VE+++R  GAVPAT+A+L G PH+GL ++QL  LAS   R  K SRRDLA  M++ + GATTV+AT  LA+ AG+ +FVTGG+GGVHRG E+TMD+SADL EL RTPV VVCAG KS+LDI +TLE LET GV V + GTDEFPAFF+  SG R+P+R+DT  E AE  +A
Sbjct:   87 SATAQGIVVGAEVQRALRMGAAVVALESTIISHGMPFPQNLETARAVESVIREQGAVPATIAILDGVPHIGLTDEQLHSLASQAGRVRKTSRRDLAYVMARRLHGATTVSATMLLAARAGIHIFVTGGIGGVHRGAESTMDVSADLTELGRTPVAVVCAGAKSILDIPRTLEYLETQGVSVAAYGTDEFPAFFTRRSGCRAPMRIDTPEEGAELIRA 303          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: A0A250XM37_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XM37_9CHLO)

HSP 1 Score: 253 bits (646), Expect = 8.160e-81
Identity = 128/205 (62.44%), Postives = 164/205 (80.00%), Query Frame = 1
Query:   40 IVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATEVA 654
            + SPEV  AL++G PVVALESTIISHGMP+P+N++ A +VE +V + GAVPAT+A++ G+P +GL  +QLE +A  GP   K SRRDL + +++G+DGATTV+AT  LA+ +G+ VFVTGG+GGVHRGGE+TMDISADL ELARTPV V+CAG KSVLDI +TLE LET+GV V +  TDEFPAFF+ SSG ++P R D+  EVA
Sbjct:    9 VYSPEVARALQEGRPVVALESTIISHGMPYPQNIQTATEVEEVVSQQGAVPATIAIIGGKPCIGLTREQLEHIAKAGPAVRKVSRRDLPLVIAKGLDGATTVSATMLLAARSGINVFVTGGIGGVHRGGESTMDISADLTELARTPVAVICAGAKSVLDIPRTLEFLETHGVTVTAYQTDEFPAFFTRSSGCKAPCRSDSPLEVA 213          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: A0A2V0PQK0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PQK0_9CHLO)

HSP 1 Score: 254 bits (649), Expect = 1.390e-80
Identity = 134/211 (63.51%), Postives = 163/211 (77.25%), Query Frame = 1
Query:   37 LIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATEVAEAAKA 669
            L V+PEV  ALR+G  VVALESTIISHGMP+P+NLE A +VE  VR GGAVPAT+A++ GR  VGL ++Q+E +A GG    K SRRDL +A++ G DGATTV+AT  LA+ AG+RVFVTGG+GGVHRGGE++MD+SADL EL RTPV V+CAG KSVLDI +TLE LET GVPV + G DE PAFF+  SG ++P R+DT  E A   KA
Sbjct:   67 LTVAPEVAAALREGRAVVALESTIISHGMPYPQNLETALEVEARVRAGGAVPATIAIIGGRCCVGLSKEQIERIARGGSAVQKVSRRDLPLAVASGADGATTVSATMLLAARAGIRVFVTGGIGGVHRGGESSMDVSADLTELGRTPVAVICAGAKSVLDIPRTLEYLETQGVPVAAFGADELPAFFTRHSGCKAPCRVDTPREAAALFKA 277          
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Match: A0A3S3QX17_9MICO (Pseudouridine-5'-phosphate glycosidase n=1 Tax=Phycicoccus flavus TaxID=2502783 RepID=A0A3S3QX17_9MICO)

HSP 1 Score: 252 bits (643), Expect = 1.700e-80
Identity = 140/211 (66.35%), Postives = 167/211 (79.15%), Query Frame = 1
Query:   37 LIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVENIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVAMSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAELARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSGVRSPLRLDTATEVAEAAKA 669
            L ++PEVR+AL  G PVVALESTIISHGMP+PEN+ MAR VE +VR GGAVPAT+AV+AGRP VGL + +LE LAS G    K S RDL   +S G  GATTVA+T  +A LAG+ +FVTGG+GGVH+G E++MD+SADL EL+RTPV VV AGVKS+LDI +TLEVLET GVPVV  GTD+FP+FFS SSGV  P+RLDT  EVA  A+A
Sbjct:   11 LALAPEVRDALADGHPVVALESTIISHGMPYPENVGMARTVEGLVREGGAVPATIAVIAGRPTVGLGDAELELLASDGSVP-KVSVRDLGRVVSTGSHGATTVASTMRIAGLAGIGLFVTGGLGGVHQGAESSMDVSADLTELSRTPVAVVSAGVKSILDIGRTLEVLETLGVPVVGFGTDDFPSFFSRSSGVPVPMRLDTPEEVAALARA 220          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9661.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN3_ECTSI3.910e-10677.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A150GKH1_GONPE4.750e-8464.06Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A2J8A315_9CHLO2.990e-8362.74Pseudouridine-5'-phosphate glycosidase (Fragment) ... [more]
A0A835Y3Q7_9CHLO5.980e-8364.56Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
I0YT19_COCSC5.720e-8263.51Erwinia chrysanthemi IndA protein-like protein-lik... [more]
A0A8J4D4U1_9CHLO1.260e-8163.59Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ... [more]
A0A8J9REA2_9CHLO7.230e-8161.29Pseudouridine-5'-phosphate glycosidase n=1 Tax=Coc... [more]
A0A250XM37_9CHLO8.160e-8162.44Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A2V0PQK0_9CHLO1.390e-8063.51Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A3S3QX17_9MICO1.700e-8066.35Pseudouridine-5'-phosphate glycosidase n=1 Tax=Phy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9661contigD-mesarthrocarpus_Contig9661:211..4192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLN3
PFAMsIndigoidine_A,PfkB
Model size672
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017,RC00432,RC00433
KEGG koko:K16329,ko:K16330
KEGG ReactionR01055,R03315
KEGG Pathwayko00240,map00240
Hectar predicted targeting categoryother localisation
GOsGO:0001522,GO:0003674,GO:0003824,GO:0004730,GO:0006139,GO:0006213,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009116,GO:0009451,GO:0009987,GO:0016070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016835,GO:0016836,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050225,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:1901135,GO:1901360,GO:1901564,GO:1901657
Exons4
Evalue6.18e-106
EggNOG OGsCOG2313@1|root,KOG3009@2759|Eukaryota
EC2.7.1.83,4.2.1.70
DescriptionPseudouridine-metabolizing bifunctional protein
Cds size660
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791119.3608248-UTR-D-mesarthrocarpus_Contig9661:210..2221680791119.3608248-UTR-D-mesarthrocarpus_Contig9661:210..222Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9661 211..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791119.37794-CDS-D-mesarthrocarpus_Contig9661:222..3621680791119.37794-CDS-D-mesarthrocarpus_Contig9661:222..362Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9661 223..362 +
1680791119.3888404-CDS-D-mesarthrocarpus_Contig9661:1027..11961680791119.3888404-CDS-D-mesarthrocarpus_Contig9661:1027..1196Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9661 1028..1196 +
1680791119.399674-CDS-D-mesarthrocarpus_Contig9661:2731..29441680791119.399674-CDS-D-mesarthrocarpus_Contig9661:2731..2944Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9661 2732..2944 +
1680791119.4101148-CDS-D-mesarthrocarpus_Contig9661:4054..41921680791119.4101148-CDS-D-mesarthrocarpus_Contig9661:4054..4192Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9661 4055..4192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9661.1.1prot_D-mesarthrocarpus_Contig9661.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9661 223..4192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9661.1.1

>prot_D-mesarthrocarpus_Contig9661.1.1 ID=prot_D-mesarthrocarpus_Contig9661.1.1|Name=mRNA_D-mesarthrocarpus_Contig9661.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=220bp
MSASASRRLIVSPEVREALRKGLPVVALESTIISHGMPFPENLEMARDVE
NIVRRGGAVPATVAVLAGRPHVGLDEQQLEGLASGGPRAWKCSRRDLAVA
MSQGVDGATTVAATAYLASLAGVRVFVTGGVGGVHRGGEATMDISADLAE
LARTPVVVVCAGVKSVLDIEKTLEVLETNGVPVVSLGTDEFPAFFSPSSG
VRSPLRLDTATEVAEAAKAG
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9661:211..4192+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9661.1.1 ID=mRNA_D-mesarthrocarpus_Contig9661.1.1|Name=mRNA_D-mesarthrocarpus_Contig9661.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3982bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9661:211..4192+ (Discosporangium mesarthrocarpum MT17_79)
CCATACCGTCTGATGTCGGCGTCAGCATCGAGGAGGTTGATCGTGAGCCC CGAAGTGAGGGAGGCGCTACGAAAGGGGCTTCCGGTCGTAGCCCTGGAAT CGACCATCATTTCTCATGGGATGCCTTTCCCTGAGAACTTGGAGATGGCC AGGTGTGGTTAATTATTTCCCACTTATTATTTCACGGTTGGCTGAGCCCT GTGTGTGCAAGTGATTTTATCCAGGTGATACTATCCTGGTTGCTCCGGGA AGAATATGGGCATGTTGAACAAGGAGCAATACCCCCAGCGATTCGTAAGG AACCGTTAAATCAGGACGAGACTCTACTGTAATATGAAGCTTTGATGTTG TTGCTGGTGTTCTTTGCTGGGGTGAGTGGATGGTTATCCTGTTCGTACGC GAGCAGCATACTGCAAGATCAAAGCTCCCAACAACCGTAGAAGCTCGCGC ATCTTGACTGTCCGCCCTGTGAGCGACAAATTGTTAGTTCGGATTCATCT GAATGGACTTGGTGGGTCAAGCGGAGCAGTCTGAATCCCCGCACCAAAGC ATCTTGACTGCAGGGCATGGATTGCATTAACCCCCCCTTCAGCTCCATGC TCCCCGTATAAGGCTCCAGAGTATAGTAGTACTTCGAAGTACCAAGTTAG GAGTATTTCGACATGTAGCAGCACACCCTGACCCTAACCCTGAGCCTGAC CCTGTATGTGTTGTGCCAAGCAGAATGACAGCAATGCACCAACAGAAACT TGACTGCATGCCCACGCTCATACTGCATGTTGTAAACACACCAAACACAC CGCCTTGCTTTCACAAGGGACGTGGAGAACATTGTCCGGCGAGGGGGGGC TGTCCCAGCCACAGTCGCTGTGCTTGCTGGCAGGCCTCACGTGGGCCTTG ACGAGCAACAGCTGGAGGGCTTGGCCAGTGGGGGGCCCAGGGCATGGAAG TGCTCGCGACGAGATTTGGCAGTGGCAATGTCCCAGGTGCATGGGTGGCT AGGGAGGGGAGCGGGGGGGGGATAGCTCTCGGGACAGCACAGGGAACAAG AGAATTTGTGTCTTGTCCATGGCCTTGCGCCTGCCTGTGCATTGACTTTC CACCGCGAGCGCTGAGGAGTGGGACAGATCTGATTGGTTGAGTGGCCAGC TGGCGGATATGTCTTGTGATTGGTCTACTTCAAGTGCCGTGATTGGTCTA CTTCAAGTGCTGTGATTGGTCTCTCCGGCACGAAATGGGAAGTGGAGGTC TCTCTTGGCATTGTTGTTGTTGCTGCTGCCGGTGTTGTTGTTCGCTGTTG GTCAGTGCTTGCCGTACTGGGTTTGGAGTACACGTGTCAGCCTTGAAGCT GTCAGGGTTTCCACGGCACTCTTTTCAAGGCGGAGAACTCCAGGGCGGGC GCTGCACTCCCTGTCGGGAAAATTGTAACCCTTTACCAGCGGGCTCTCAG CCGATGGACGTGCTTGGGGGTGGAATGGACACTTCCAGAAAATGCGATTC GGGAGATCTTTACCCTTCCGTGTGCCATGTTCGGATCTACGTAAGCTCGG AACCACTTTAGAACCACTTTGGAACCACTTTGGAAGCGTAGGAAGAATTC ATTTTTCTAAAGGCTTTTATCGATGGTCTAATCTTCATAACAAGACAGAG ACCAAGAGTCTGCTGCACAGATTGATAATGAAGTCTCTGAAGCTGGCGTA ACGGCAGAGGCATACATGTCTAGTGTTTTTTAACAGAGAATCCATTTTTG GAGGGCACTTCAGGCCAATGCTCTTCCAAGACACATATTCAGTGGGTTCG AAATTGTACATTCTGAAGAGTTTTCTTTATTTTGCGGGGGGGCGAGAGTT CTGCTGACCAATCGAGAGCTGTTGGGGCATGAATGGATTTATGAAGGCTC TCCCCAATGAGGACAATCGACCGCGAGCAAGAGATGGAAAATCTCAGACA GAGGCACTTATTCGTCGTTTTTTTGTTTCTGCTACACTGTAGCTCTGTAT TGTCAACTGAGCTTCTAGAAGTTTCCCGCGAACGGCAGCCCCATGGCCTT GTAAAACCTGGAACCATGGGCAGGCACACCTGAGAAAACCATCCACCCCG CTGACCCCCAAACCATAGGCACCCCCTCCCCTGCCTTTCCAGCTTGACCA TGCCCCCTCCCAACATGCCCCAAGCAAAACATAGCACTTATAGTGCCGTG GCTCAACACTGTACTATACTGTACTCTTGTAATGGATACAGTACACCATT TAACACCTTTGAAGCAGTTGTGACATGTCCGAGCCCCCTCCCGCGCAACC CATTTCCTCCCCTGCCACAATACCCCCACCTCCACCTATGTGTGTGCTAG CCCTTGCCCCCCTCCCCCCTCCCTCCCTCCTCCGCCCCCCCTGAAAACCT AACCCTAACGCTAACCATAAACTTGCCGGGGATGTGGATCCTTAAACAGA CTGGGAAAAACAATTAAATATTTTTATTTTTATTTTTTAAGTAAGAAGAA AAAAATGAAAAAAATCGACAGGGGGTGGACGGGGCAACCACAGTGGCTGC AACCGCCTACCTGGCCTCCCTGGCAGGCGTGCGTGTCTTCGTCACAGGGG GAGTGGGAGGCGTGCACAGGGGGGGGGAGGCCACCATGGACATCTCCGCC GACCTGGCCGAGCTGGCACGCACCCCGGTGGTGGTGGTGTGCGCAGGGGT GAAGTCTGTCCTTGACATTGAGAAAACCCTAGAGGTGGGTGCTAGGGGGA AAGTTGGGGGGGGGGTCAGGGTAACGGGGGGAGCTGAGCAGGCTCAGTTT TTTCTGCCTTGTGTGGTGCTCTGAAGTGCCCCTCAGCGTTCAGGGGATTC GGCCTTCCGCCTGGAGTAGAAATGTACAGCCGGCTGCTTAAACCACATGT GTGTACCGATATCATACAGTCATGACTGTGTAGCATACACCTTTTTTCAC AGACCTTGCAGGAATCGACATCCAATCCACTGCTCAGACTTCTTCTTTGG TTTAACAAGGTTGAGTTAACCCAGCTTGGCTGTTCAACGAGGCACGACCC CATACATATATGCCCCTGATGATGCGCACGCACAGAATGGTGCATTCAAG CCTGCTTTCTATTTCTGTCTGTGTTCTTGGCAAAACATTCAGGATCAAAA CTTATTGGCACCCACTCACTGTAATCAGCTCGAGGTAGCCATCACGGGGT GCTGTGAGAGGGAGAGTTCTCACACAGTAAAAATAAACCATAAACATAAT CCTGGCCCTGAGTGAGTGAAGGCAGAGGAGGAAACACACCTTGGTCGAAA TGGCAGCAAATCTATTTGTTCTCCCCTGCAAACAGGGGCAGGTGAAAGGA AAAGCTGCAGCACTGATATTGTAGCAGACAGGCGCTGGGCAGTGCTGGTC CCCGGCTCACACACACACACACACACATGACCCCTCTGTGTAGGGCCATG CGCTGTGTGTCAACCAATCATCTGTCTTCTCTCAACCAATCAGGTTTCTT CTCTCACGATGAACAGGAAGTGGAAGGAGAAATCCCTGTCTCACAGAGTT AGGGTTAGGGTTAGGGTTAACCTTGGCCGATCCCATTCTTCTTATGTTTT TCTTTTCCTTTGTCGTTTGCGTGCTGTCACCCCAACCCAAGCCCTAACCC TGACCCTAACCCTCAGGAAAAGTAAAGGAGCCCTGCTGACCACTACACAA GTAGAGAAGGAGGGGATCGCCGCCCTGCACCCACCGGCCAGCTGACACAC CATGGGCCTTATTTCTTAATACATCCCCTGCCCTCTCGCCCCCCCCCCCC CCGCCCCCCAACCCCCACCCCCTGTCTCCATTCCATCGGTGCAGGTCCTG GAGACCAATGGGGTGCCTGTGGTGTCCCTGGGCACAGACGAATTCCCGGC ATTCTTCAGTCCGTCCAGCGGGGTGCGCTCGCCGCTCCGGCTCGATACTG CCACGGAGGTGGCAGAAGCAGCAAAGGCGGGT
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9661:211..4192+

>mRNA_D-mesarthrocarpus_Contig9661.1.1 ID=mRNA_D-mesarthrocarpus_Contig9661.1.1|Name=mRNA_D-mesarthrocarpus_Contig9661.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=660bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9661:211..4192+ (Discosporangium mesarthrocarpum MT17_79)
ATGTCGGCGTCAGCATCGAGGAGGTTGATCGTGAGCCCCGAAGTGAGGGA
GGCGCTACGAAAGGGGCTTCCGGTCGTAGCCCTGGAATCGACCATCATTT
CTCATGGGATGCCTTTCCCTGAGAACTTGGAGATGGCCAGGGACGTGGAG
AACATTGTCCGGCGAGGGGGGGCTGTCCCAGCCACAGTCGCTGTGCTTGC
TGGCAGGCCTCACGTGGGCCTTGACGAGCAACAGCTGGAGGGCTTGGCCA
GTGGGGGGCCCAGGGCATGGAAGTGCTCGCGACGAGATTTGGCAGTGGCA
ATGTCCCAGGGGGTGGACGGGGCAACCACAGTGGCTGCAACCGCCTACCT
GGCCTCCCTGGCAGGCGTGCGTGTCTTCGTCACAGGGGGAGTGGGAGGCG
TGCACAGGGGGGGGGAGGCCACCATGGACATCTCCGCCGACCTGGCCGAG
CTGGCACGCACCCCGGTGGTGGTGGTGTGCGCAGGGGTGAAGTCTGTCCT
TGACATTGAGAAAACCCTAGAGGTCCTGGAGACCAATGGGGTGCCTGTGG
TGTCCCTGGGCACAGACGAATTCCCGGCATTCTTCAGTCCGTCCAGCGGG
GTGCGCTCGCCGCTCCGGCTCGATACTGCCACGGAGGTGGCAGAAGCAGC
AAAGGCGGGT
back to top