mRNA_D-mesarthrocarpus_Contig966.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig966.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig966.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A4D9DCK2_9STRA (Dynamin-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCK2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.300e-19
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            V+++YENFV ++VDDCL RCRDDLKALTRFVTWDLHERSAGALQRSL
Sbjct:  657 VRRIYENFVYKTVDDCLVRCRDDLKALTRFVTWDLHERSAGALQRSL 703
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A835Z2U6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.860e-18
Identity = 37/47 (78.72%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            V+++YENF+E S+DDCL RCRDDLKALTRFVTWDL+ERS+GAL RSL
Sbjct:  286 VRRIYENFIEASIDDCLVRCRDDLKALTRFVTWDLNERSSGALHRSL 332
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A835YPI8_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.490e-18
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            V+++YENF+E SVDDCL RCRDDLKALTRFVTWDL ERS+GAL RSL
Sbjct:  610 VRRIYENFIEASVDDCLVRCRDDLKALTRFVTWDLGERSSGALHRSL 656
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: D8LDP8_ECTSI (ARC5, dynamin-related protein involved in plastid division n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.560e-17
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            VK+VYE FVE++VD+ L RCRDDL ALTRFVTWDLHERSAGAL+RSL
Sbjct:  625 VKRVYEKFVEKAVDETLARCRDDLTALTRFVTWDLHERSAGALRRSL 671
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A6H5JQ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ42_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.560e-17
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            VK+VYE FVE++VD+ L RCRDDL ALTRFVTWDLHERSAGAL+RSL
Sbjct:  385 VKRVYEKFVEKAVDETLARCRDDLTALTRFVTWDLHERSAGALRRSL 431
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A7S0CK04_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK04_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.720e-13
Identity = 28/47 (59.57%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            V+ +++NF++++ D  + RCRDDL +LT+FVTWDLHERS GAL+RSL
Sbjct:  487 VRTIFDNFLQKTSDSAMSRCRDDLVSLTKFVTWDLHERSGGALRRSL 533
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A7S2UD37_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD37_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.060e-12
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            ++ ++E FV++  D  + RCRDDL ALTRFVTWDLHER  GAL+RSL
Sbjct:  748 IQAIFEEFVQKCSDSAMSRCRDDLTALTRFVTWDLHERGGGALRRSL 794
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A7S3UW64_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW64_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-12
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            +++VY  FV+ ++D+ + +CR DLKA+TRFVTWDLHER  GALQRSL
Sbjct:  584 LEKVYTQFVDETIDNAIDQCRYDLKAITRFVTWDLHERGTGALQRSL 630
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A7S4N729_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N729_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.970e-12
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            V+ +++ F+E+     ++RC+DDL A+TRFVTWDLHERSAGAL+RSL
Sbjct:  319 VRSIFDKFIEKCSHSTMRRCQDDLTAMTRFVTWDLHERSAGALRRSL 365
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BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Match: A0A7S1YZI6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZI6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-11
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL 141
            V+ +++ FV +  D  + RCRDDL++LTRFVTWDL+ERS+GAL+RSL
Sbjct:  303 VRTIFDQFVRKCSDSTMIRCRDDLQSLTRFVTWDLNERSSGALRRSL 349
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig966.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A4D9DCK2_9STRA1.300e-1985.11Dynamin-type G domain-containing protein n=2 Tax=M... [more]
A0A835Z2U6_9STRA2.860e-1878.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YPI8_9STRA5.490e-1880.85Dynamin-type G domain-containing protein n=1 Tax=T... [more]
D8LDP8_ECTSI3.560e-1780.85ARC5, dynamin-related protein involved in plastid ... [more]
A0A6H5JQ42_9PHAE3.560e-1780.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0CK04_9STRA7.720e-1359.57Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S2UD37_9STRA1.060e-1261.70Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3UW64_HETAK1.440e-1261.70Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4N729_9STRA1.970e-1259.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1YZI6_9STRA2.400e-1159.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig966contigD-mesarthrocarpus_Contig966:25256..25396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDP8
Preferred nameARC5
PFAMsDynamin_N,WD40
Model size141
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006996,GO:0007031,GO:0007623,GO:0008017,GO:0008092,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009657,GO:0009658,GO:0009707,GO:0009941,GO:0009987,GO:0010020,GO:0015631,GO:0016020,GO:0016043,GO:0016462,GO:0016559,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0042170,GO:0042579,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043572,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048511,GO:0071840,GO:0098588,GO:0098805
Exons1
Evalue5.84e-18
EggNOG OGsCOG0699@1|root,KOG0446@2759|Eukaryota
Descriptionmitochondrial fission
Cds size141
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791119.2445414-CDS-D-mesarthrocarpus_Contig966:25255..253961680791119.2445414-CDS-D-mesarthrocarpus_Contig966:25255..25396Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig966 25256..25396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig966.2.1prot_D-mesarthrocarpus_Contig966.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig966 25256..25396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig966.2.1

>prot_D-mesarthrocarpus_Contig966.2.1 ID=prot_D-mesarthrocarpus_Contig966.2.1|Name=mRNA_D-mesarthrocarpus_Contig966.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=47bp
VKQVYENFVERSVDDCLKRCRDDLKALTRFVTWDLHERSAGALQRSL
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mRNA from alignment at D-mesarthrocarpus_Contig966:25256..25396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig966.2.1 ID=mRNA_D-mesarthrocarpus_Contig966.2.1|Name=mRNA_D-mesarthrocarpus_Contig966.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=141bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig966:25256..25396- (Discosporangium mesarthrocarpum MT17_79)
GTGAAGCAGGTGTACGAAAACTTTGTCGAAAGATCCGTGGATGACTGCCT
CAAGCGGTGCCGGGACGACCTTAAGGCCCTAACCCGGTTCGTTACCTGGG
ACCTTCATGAGCGATCTGCAGGGGCCCTCCAGCGCTCCCTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig966:25256..25396-

>mRNA_D-mesarthrocarpus_Contig966.2.1 ID=mRNA_D-mesarthrocarpus_Contig966.2.1|Name=mRNA_D-mesarthrocarpus_Contig966.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=141bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig966:25256..25396- (Discosporangium mesarthrocarpum MT17_79)
GTGAAGCAGGTGTACGAAAACTTTGTCGAAAGATCCGTGGATGACTGCCT
CAAGCGGTGCCGGGACGACCTTAAGGCCCTAACCCGGTTCGTTACCTGGG
ACCTTCATGAGCGATCTGCAGGGGCCCTCCAGCGCTCCCTC
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