mRNA_D-mesarthrocarpus_Contig9656.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9656.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig9656.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9656.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9656contigD-mesarthrocarpus_Contig9656:1681..2560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog140110.NechaP88015
Model size880
Max annot lvl140110.NechaP88015|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.85e-05
EggNOG OGs2ED2G@1|root,2SIT3@2759|Eukaryota,38EB4@33154|Opisthokonta,3NZWG@4751|Fungi,3QPVZ@4890|Ascomycota,218IV@147550|Sordariomycetes,3TEW9@5125|Hypocreales
DescriptionZn(2)-Cys(6) zinc finger domain protein
Cds size606
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791118.9665315-UTR-D-mesarthrocarpus_Contig9656:1680..17861680791118.9665315-UTR-D-mesarthrocarpus_Contig9656:1680..1786Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9656 1681..1786 -
1680791118.9981153-UTR-D-mesarthrocarpus_Contig9656:2392..25601680791118.9981153-UTR-D-mesarthrocarpus_Contig9656:2392..2560Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9656 2393..2560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791118.9822187-CDS-D-mesarthrocarpus_Contig9656:1786..23921680791118.9822187-CDS-D-mesarthrocarpus_Contig9656:1786..2392Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9656 1787..2392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9656.4.1prot_D-mesarthrocarpus_Contig9656.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9656 1787..2392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9656.4.1

>prot_D-mesarthrocarpus_Contig9656.4.1 ID=prot_D-mesarthrocarpus_Contig9656.4.1|Name=mRNA_D-mesarthrocarpus_Contig9656.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=202bp
MEGEGRTCISCRVSKVKCDKGLPCSRCLRLNSVCVAQTRGRGRPVQQLKT
SEGIARSAEASQLHQKDRHTRSARYGRTQSKYHASRTSTRRPVRRKGTVI
PQNCAKLALAQRRKNESREKKEETSPKNSSLNTEPVRVIDDHSQELDDTL
LREPLPMVPHQHSDTSPLQQVKPRCGFSTGAVSEVVHHLYRRLLFIGPLI
L*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9656:1681..2560-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9656.4.1 ID=mRNA_D-mesarthrocarpus_Contig9656.4.1|Name=mRNA_D-mesarthrocarpus_Contig9656.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=880bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9656:1681..2560- (Discosporangium mesarthrocarpum MT17_79)
GTTGGAAACGCTTCCGCAAATATTCGGCCCCAGATTTCTCGACATATTGC
TCTGCCAAACAGGGTATGTATCTTGCCCACAGGACTGCAACTATCTAGGC
GCCTTATCTGGCCGTGTCAAGAACCCAACTGATTGGCCCCTTTGTCGTTT
TACCCTCCAATTGCTCATATGGAGGGCGAAGGCCGAACTTGCATATCATG
TCGTGTATCGAAGGTGAAGTGTGACAAGGGTTTGCCTTGTTCGAGGTGTT
TACGCCTCAACTCGGTTTGCGTGGCCCAGACTAGAGGGCGTGGGCGCCCT
GTCCAGCAACTCAAGACCAGTGAGGGGATTGCAAGGTCTGCGGAGGCTTC
TCAACTGCACCAAAAAGACCGCCACACGCGTTCAGCAAGGTATGGTCGCA
CCCAGAGCAAGTATCATGCCAGCCGAACAAGCACGAGGCGACCTGTGAGA
AGGAAGGGTACGGTCATCCCCCAGAACTGCGCTAAGTTGGCACTGGCTCA
ACGCAGGAAAAATGAGTCGCGAGAGAAGAAAGAGGAGACCTCTCCAAAGA
ATTCTAGCCTCAACACAGAGCCGGTGCGGGTTATAGACGACCACTCGCAG
GAACTCGACGATACACTGTTGAGAGAGCCACTGCCGATGGTACCGCATCA
GCACTCAGACACATCGCCTCTCCAACAGGTAAAGCCCCGATGTGGATTCT
CAACTGGTGCTGTTTCAGAGGTCGTACACCATCTCTACCGTAGGCTTCTT
TTCATAGGACCTCTAATCCTGTGAGTCGTGGATGCACTAAGAGAGTAATA
CTTGCAAGGACTTCCTTCTCTCGTGTTGACAATGGTTGCCCATTCCTGGC
GATATATCAGCGAGATGTCTTGTTGCAGGC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9656:1681..2560-

>mRNA_D-mesarthrocarpus_Contig9656.4.1 ID=mRNA_D-mesarthrocarpus_Contig9656.4.1|Name=mRNA_D-mesarthrocarpus_Contig9656.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=606bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9656:1681..2560- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGGGCGAAGGCCGAACTTGCATATCATGTCGTGTATCGAAGGTGAA
GTGTGACAAGGGTTTGCCTTGTTCGAGGTGTTTACGCCTCAACTCGGTTT
GCGTGGCCCAGACTAGAGGGCGTGGGCGCCCTGTCCAGCAACTCAAGACC
AGTGAGGGGATTGCAAGGTCTGCGGAGGCTTCTCAACTGCACCAAAAAGA
CCGCCACACGCGTTCAGCAAGGTATGGTCGCACCCAGAGCAAGTATCATG
CCAGCCGAACAAGCACGAGGCGACCTGTGAGAAGGAAGGGTACGGTCATC
CCCCAGAACTGCGCTAAGTTGGCACTGGCTCAACGCAGGAAAAATGAGTC
GCGAGAGAAGAAAGAGGAGACCTCTCCAAAGAATTCTAGCCTCAACACAG
AGCCGGTGCGGGTTATAGACGACCACTCGCAGGAACTCGACGATACACTG
TTGAGAGAGCCACTGCCGATGGTACCGCATCAGCACTCAGACACATCGCC
TCTCCAACAGGTAAAGCCCCGATGTGGATTCTCAACTGGTGCTGTTTCAG
AGGTCGTACACCATCTCTACCGTAGGCTTCTTTTCATAGGACCTCTAATC
CTGTGA
back to top