mRNA_D-mesarthrocarpus_Contig9655.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9655.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig9655.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9655.5.1 vs. uniprot
Match: A0A6H5JA16_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA16_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.350e-11
Identity = 79/250 (31.60%), Postives = 111/250 (44.40%), Query Frame = 1 
Query:    1 SEVVEGYLGLCE--LVVGLSGGGPPGKA-SLMLETLQGACMLLRLPGEGMRDKQKQGWKDSLRMVEG------------QQGFGPVPSIQEAFREHHAQARIVRVMEQVAGAGTGASGRCAAEDGAXXXXXXXXICWSESDRCAVILALLAFLTALMARNSLGKTAFQRALAD-----KAGAWAFVSDREGGDRAWEARRGRGRHPGAPGIG--PYAALAGLVDPLPSWELFPALMEMLLDGPVPLDMVD 684
            S +VEGY+ LCE   V  ++G        SL+L+ L GAC L+R        +     +  ++   G            Q+  G +P +QE FREH A AR++ V+E VAG         AA               SE     ++ A L+  TA+MARNSLGK A +RAL++     K    A  S    G   W             GIG   + ALA L   + S  +  +L+EML+DG VP  ++D
Sbjct: 1053 SGLVEGYICLCERAAVATVAGSAATDDGPSLLLDALHGACALMRSEAPRNMGEVSASGRGGIQSTSGGAENGPSSRPTRQEDTGVLPLLQETFREHWASARLLVVLESVAG-------DLAASRSTPNSSSVPKEGCSE-----IVTACLSLFTAMMARNSLGKKAIRRALSEHYVGRKDSPGAVPSSMPCGAAGW-------------GIGGSSFVALAHLAGVVSSASMCESLVEMLMDGEVPECVLD 1277
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BLAST of mRNA_D-mesarthrocarpus_Contig9655.5.1 vs. uniprot
Match: D8LL16_ECTSI (Similar to neurobeachin like 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL16_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.640e-10
Identity = 77/245 (31.43%), Postives = 107/245 (43.67%), Query Frame = 1 
Query:    1 SEVVEGYLGLCE--LVVGLSGGGPPGKAS-LMLETLQGACMLLRLPGEGMRDKQKQGWKDSLRMVEGQQGFGP------------VPSIQEAFREHHAQARIVRVMEQVAGAGTGASGRCAAEDGAXXXXXXXXICWSESDRCAVILALLAFLTALMARNSLGKTAFQRALAD-----KAGAWAFVSDREGGDRAWEARRGRGRHPGAPGIG--PYAALAGLVDPLPSWELFPALMEMLLDGPVP 669
            S +VEGY+ LCE   V  ++G         L+L+ L GAC L+R        +     +  ++   G    GP            +P +QE FREH A AR++ V+E VAG         AA               SE     ++ A L+  TA+MARNSLGK A +RAL++     K    A  S   GG   W             GIG   + ALA L   + +  +  +L+EML+DG VP
Sbjct:  716 SGLVEGYICLCERAAVATVAGSAATDDGPRLLLDALHGACALMRSEAPRNMGEASTSDRGGIQGTSGGAENGPSSRPTRQGDTGVLPLLQETFREHWASARLLVVLESVAG-------DLAASRSTPNSSSVPKEGCSE-----IVTACLSLFTAMMARNSLGKKAIRRALSEHYFGRKDLPGAVPSSMPGGAAGW-------------GIGGSSFVALAHLAGVVSAASMCESLVEMLMDGEVP 935
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9655.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA16_9PHAE1.350e-1131.60BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LL16_ECTSI3.640e-1031.43Similar to neurobeachin like 1 n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9655contigD-mesarthrocarpus_Contig9655:2125..2904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LL16
PFAMsBeach,PH_BEACH
Model size780
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.96e-11
EggNOG OGsKOG1787@1|root,KOG1787@2759|Eukaryota
Descriptionplatelet formation
Cds size780
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791118.862789-CDS-D-mesarthrocarpus_Contig9655:2124..29041680791118.862789-CDS-D-mesarthrocarpus_Contig9655:2124..2904Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9655 2125..2904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9655.5.1prot_D-mesarthrocarpus_Contig9655.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9655 2125..2904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9655.5.1

>prot_D-mesarthrocarpus_Contig9655.5.1 ID=prot_D-mesarthrocarpus_Contig9655.5.1|Name=mRNA_D-mesarthrocarpus_Contig9655.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=260bp
SEVVEGYLGLCELVVGLSGGGPPGKASLMLETLQGACMLLRLPGEGMRDK
QKQGWKDSLRMVEGQQGFGPVPSIQEAFREHHAQARIVRVMEQVAGAGTG
ASGRCAAEDGAGAGARADGICWSESDRCAVILALLAFLTALMARNSLGKT
AFQRALADKAGAWAFVSDREGGDRAWEARRGRGRHPGAPGIGPYAALAGL
VDPLPSWELFPALMEMLLDGPVPLDMVDPAARRAATAGEDGAQEAGASAG
AAGATRGDDG
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mRNA from alignment at D-mesarthrocarpus_Contig9655:2125..2904+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9655.5.1 ID=mRNA_D-mesarthrocarpus_Contig9655.5.1|Name=mRNA_D-mesarthrocarpus_Contig9655.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=780bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9655:2125..2904+ (Discosporangium mesarthrocarpum MT17_79)
TCCGAGGTAGTGGAGGGTTATCTTGGGCTCTGTGAGCTCGTGGTGGGGTT
GAGTGGAGGGGGCCCGCCGGGGAAGGCATCTCTGATGCTGGAAACCCTGC
AGGGGGCATGCATGCTGCTGCGACTGCCTGGGGAGGGGATGAGAGACAAG
CAAAAGCAGGGGTGGAAAGATTCTCTCAGGATGGTGGAGGGGCAGCAAGG
CTTCGGGCCTGTCCCTTCTATTCAGGAGGCCTTTCGAGAACACCATGCCC
AGGCTCGAATCGTCAGGGTGATGGAGCAGGTGGCAGGGGCAGGGACGGGG
GCGAGCGGAAGGTGCGCCGCCGAGGATGGGGCTGGGGCCGGGGCCAGGGC
TGATGGTATCTGCTGGTCAGAGAGCGACCGCTGTGCAGTGATATTGGCTT
TGCTGGCATTCCTCACAGCGCTCATGGCCCGGAATTCATTGGGGAAAACC
GCCTTCCAGCGGGCGCTAGCAGACAAGGCCGGGGCGTGGGCTTTCGTGTC
AGATCGAGAGGGCGGTGACAGGGCTTGGGAGGCCAGGAGGGGGAGGGGGA
GACACCCGGGGGCCCCGGGTATTGGGCCGTACGCAGCACTTGCTGGCCTG
GTAGACCCTCTTCCCTCTTGGGAGTTGTTCCCTGCCCTGATGGAAATGCT
CCTCGACGGACCAGTTCCATTAGACATGGTCGATCCCGCGGCGAGGAGGG
CGGCAACGGCGGGGGAAGATGGGGCACAGGAAGCCGGCGCGTCGGCAGGA
GCTGCAGGAGCTACAAGGGGAGATGATGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9655:2125..2904+

>mRNA_D-mesarthrocarpus_Contig9655.5.1 ID=mRNA_D-mesarthrocarpus_Contig9655.5.1|Name=mRNA_D-mesarthrocarpus_Contig9655.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=780bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9655:2125..2904+ (Discosporangium mesarthrocarpum MT17_79)
TCCGAGGTAGTGGAGGGTTATCTTGGGCTCTGTGAGCTCGTGGTGGGGTT
GAGTGGAGGGGGCCCGCCGGGGAAGGCATCTCTGATGCTGGAAACCCTGC
AGGGGGCATGCATGCTGCTGCGACTGCCTGGGGAGGGGATGAGAGACAAG
CAAAAGCAGGGGTGGAAAGATTCTCTCAGGATGGTGGAGGGGCAGCAAGG
CTTCGGGCCTGTCCCTTCTATTCAGGAGGCCTTTCGAGAACACCATGCCC
AGGCTCGAATCGTCAGGGTGATGGAGCAGGTGGCAGGGGCAGGGACGGGG
GCGAGCGGAAGGTGCGCCGCCGAGGATGGGGCTGGGGCCGGGGCCAGGGC
TGATGGTATCTGCTGGTCAGAGAGCGACCGCTGTGCAGTGATATTGGCTT
TGCTGGCATTCCTCACAGCGCTCATGGCCCGGAATTCATTGGGGAAAACC
GCCTTCCAGCGGGCGCTAGCAGACAAGGCCGGGGCGTGGGCTTTCGTGTC
AGATCGAGAGGGCGGTGACAGGGCTTGGGAGGCCAGGAGGGGGAGGGGGA
GACACCCGGGGGCCCCGGGTATTGGGCCGTACGCAGCACTTGCTGGCCTG
GTAGACCCTCTTCCCTCTTGGGAGTTGTTCCCTGCCCTGATGGAAATGCT
CCTCGACGGACCAGTTCCATTAGACATGGTCGATCCCGCGGCGAGGAGGG
CGGCAACGGCGGGGGAAGATGGGGCACAGGAAGCCGGCGCGTCGGCAGGA
GCTGCAGGAGCTACAAGGGGAGATGATGGG
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