mRNA_D-mesarthrocarpus_Contig9655.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9655.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9655.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9655.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9655contigD-mesarthrocarpus_Contig9655:1045..1337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size280
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791118.7358532-UTR-D-mesarthrocarpus_Contig9655:1044..10451680791118.7358532-UTR-D-mesarthrocarpus_Contig9655:1044..1045Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9655 1045..1045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791118.7509613-CDS-D-mesarthrocarpus_Contig9655:1045..12521680791118.7509613-CDS-D-mesarthrocarpus_Contig9655:1045..1252Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9655 1046..1252 -
1680791118.7660167-CDS-D-mesarthrocarpus_Contig9655:1265..13371680791118.7660167-CDS-D-mesarthrocarpus_Contig9655:1265..1337Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9655 1266..1337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9655.3.1prot_D-mesarthrocarpus_Contig9655.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9655 1046..1337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9655.3.1

>prot_D-mesarthrocarpus_Contig9655.3.1 ID=prot_D-mesarthrocarpus_Contig9655.3.1|Name=mRNA_D-mesarthrocarpus_Contig9655.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=93bp
ITFTVPSVSVSSPPAPAPAPAPAPIQPWDPPCAPLGSTPLHIDTKPDAGQ
RSCRDGGAGGCRGPPPPPTTCAATGTLELPPRLPDSLGTGPT*
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mRNA from alignment at D-mesarthrocarpus_Contig9655:1045..1337-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9655.3.1 ID=mRNA_D-mesarthrocarpus_Contig9655.3.1|Name=mRNA_D-mesarthrocarpus_Contig9655.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=293bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9655:1045..1337- (Discosporangium mesarthrocarpum MT17_79)
ATAACCTTTACAGTGCCTTCGGTGTCCGTTTCTTCTCCTCCTGCCCCAGC
CCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGATTCAGCCGTGGGAT
CCCCCATGCGCCCCGCTGGGCTCCACACCTCTGCACATAGACACAAAGCC
AGACGCAGGGCAGAGGTCCTGCAGGGACGGGGGAGCAGGGGGATGCCGAG
GACCTCCTCCGCCGCCAACAACCTGCGCAGCCACCGGCACGCTTGAGCTC
CCACCACGGCTGCCAGATTCCCTGGGTACAGGGCCGACCTAAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9655:1045..1337-

>mRNA_D-mesarthrocarpus_Contig9655.3.1 ID=mRNA_D-mesarthrocarpus_Contig9655.3.1|Name=mRNA_D-mesarthrocarpus_Contig9655.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=279bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9655:1045..1337- (Discosporangium mesarthrocarpum MT17_79)
ATAACCTTTACAGTGCCTTCGGTGTCCGTTTCTTCTCCTCCTGCCCCAGC
CCCAGCCCCAGCCCCAGCCCCAATTCAGCCGTGGGATCCCCCATGCGCCC
CGCTGGGCTCCACACCTCTGCACATAGACACAAAGCCAGACGCAGGGCAG
AGGTCCTGCAGGGACGGGGGAGCAGGGGGATGCCGAGGACCTCCTCCGCC
GCCAACAACCTGCGCAGCCACCGGCACGCTTGAGCTCCCACCACGGCTGC
CAGATTCCCTGGGTACAGGGCCGACCTAA
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