mRNA_D-mesarthrocarpus_Contig965.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig965.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig965.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 4.560e-34
Identity = 76/156 (48.72%), Postives = 106/156 (67.95%), Query Frame = 1
Query:    4 QAYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGD--------GSVPAYSTFQRTWLTLFSSMLGDFHFNEFDSVNHSEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLINHYR 447
            QA SAP V G+ LF+   HS+LGPL+ + F ++ DL  FG +M++I LGF+LAFY +FG         G +  Y T+  + LTLFSSMLG+F F  F     +EAG  L++ +LCVM++ LLNLL+A+L+TAHAR+  N +KE+ LSEA++I  YR
Sbjct:  773 QAASAPFVLGKVLFLTQVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGGDIAEYDTYYSSILTLFSSMLGNFSFEVFKGAPMAEAGEVLMVFFLCVMNITLLNLLIAILATAHARLEGNADKEAVLSEAVIITQYR 928          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: A0A6H5KCQ6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ6_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.410e-32
Identity = 76/158 (48.10%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    4 QAYSAPLVFGRALFVLHA--HSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGD--------GSVPAYSTFQRTWLTLFSSMLGDFHFNEFDSVNHSEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLINHYR 447
            QA SAP V G+ LF+  A  HS+LGPL+ + F ++ DL  FG +M++I LGF+LAFY +FG         G +  Y T+  + LTLFSSM G+F F  F     +EAG  L++ +LCVM++ LLNLL+A+L+TAHAR+  N +KE+ LSEA++I  YR
Sbjct:  449 QAASAPFVLGKVLFLTQARVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGGDIAEYDTYYSSILTLFSSMFGNFSFEVFKGAPMAEAGEVLMVFFLCVMNITLLNLLIAILATAHARLEGNADKEAVLSEAVIITQYR 606          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.600e-23
Identity = 62/157 (39.49%), Postives = 99/157 (63.06%), Query Frame = 1
Query:    1 MQAYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGDGSVPAYSTFQRTWLTLFSSMLGDFHF-NEFDSVNHSEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLINHYRCLKDLIL 468
            + A SAPL+F R LF        GP++  +F M ++L+ FG++++++MLGF+++F+ LFGD       TF  T LTLF +MLG+  F   F    +      L ++YL V+++ LLNLL+AVLST+H++V    ++E  +S+A +I HYR + D+ L
Sbjct:  901 LYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGD-----VDTFGGTCLTLFKAMLGEVDFFGSFPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCL 1052          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.930e-22
Identity = 66/159 (41.51%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    7 AYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGDGSV-----PAYSTFQRTWLTLFSSMLGDFHFNEFDSVNH-----------SEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLI 435
            A SAPL+F R L +    S LGP++  +++M+S  L FG+ +V++M GF+LAF  +FG          +Y +F   +LT+F + LG+F F +FD V             S+AG FLL+ YL V+++ +LNLL+AVLSTAH  V  N EKE  L+   LI
Sbjct: 1151 AASAPLLFARLLRLSQIDSTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFGSCDAGSDLDESYGSFGTAFLTVFKAPLGEFKFEDFDDVGGQCPYNPSPGRASDAGTFLLVAYLVVLAVVMLNLLIAVLSTAHGEVYANGEKEFHLARTRLI 1309          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.720e-21
Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 1
Query:    7 AYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGDGSVPAYSTFQRTWLTLFSSMLGDFH-FNEFDSVNHSEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLINHYRCLKD 459
            A SAPLV  R LF        GP+V  +F+M + LL FG +M+++M+GF++A +  F D      + F  T L LF +MLG+   F+EF    +      L+++YLC++++ LLNLL+A+LST HA+V+ENT +   +S+A +I HYR + D
Sbjct:  858 ALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRD-----VADFGDTLLGLFKAMLGETGIFDEFSGGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVD 1004          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 9.230e-21
Identity = 64/159 (40.25%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    7 AYSAPLVFGRALFVLHAHSALGPLVSA-----------MFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGDGSVPAYSTFQRTWLTLFSSMLGDFHFNE-FDSVNHSEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLINHYR 447
            A +APL+  RALF +  H   GP++ A           +F+M   LL FG +M +I+LGF++AF+ LF D     + +F  ++L LF +MLGD  F + F    +     FLL++YL ++++ LLNLLVA+LST+HA+V EN E+E  +S A +++HY+
Sbjct:  843 ALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRD-----FDSFGESFLDLFKAMLGDTDFFKVFSGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQ 996          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.790e-20
Identity = 59/148 (39.86%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    7 AYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGDGSVPAYSTFQRTWLTLFSSMLGDF-HFNEFDSVNHSEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLINHYR 447
            A SAPL+  RALF +  H   GP+V  +F+M + LL FG +M ++M+GF++AF+ LF D     + +F  ++L LF +M G+   FN F    +      LL++YL ++++ LLNLLVA+LST+H++V +N ++E   S A +++HY+
Sbjct:  664 ALSAPLLVSRALFFVQIHPLQGPMV--IFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRD-----FDSFGESFLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQ 804          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.780e-19
Identity = 61/152 (40.13%), Postives = 92/152 (60.53%), Query Frame = 1
Query:    7 AYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGDGSVPAYSTFQRTWLTLFSSMLGDF-HFNEFDSVNHSEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLINHYRCLKD 459
            A SAPLV  R LF        GP+V  +F+M + LL FG +M+++M+GF++A + +F D        F  T L LF +MLG+   F+EF    +      L+++YL ++++ LLNLL+A+LST HA+V ENT     +S+A +I HYR + D
Sbjct:  841 ALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRD-----VEDFGDTLLGLFKAMLGETGFFDEFSGGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVD 987          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.770e-18
Identity = 59/144 (40.97%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    7 AYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLFGD-----GSVPAYSTFQRTWLTLFSSMLGDFHFNEFDSVNH-----------SEAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVV 390
            A SAPL+F R L +    + LGP++  +++M+S  L FG+ +V++M GF+LAF  +FG      G   +Y +F    LT+F + LG+F F +FD V             S+AG FLL+ YL V+++ +LNLL+AVLSTAH  +V
Sbjct: 1149 AVSAPLLFARLLRLSQIDNTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFGSCDAGSGLDESYGSFGTALLTVFKAPLGEFKFEDFDDVGGQCPYNPSPGRASDAGTFLLVAYLIVLAVVMLNLLIAVLSTAHGELV 1292          
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.610e-18
Identity = 62/170 (36.47%), Postives = 99/170 (58.24%), Query Frame = 1
Query:    7 AYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLGFSLAFYGLF--------------GDGSVP---AYSTFQRTWLTLFSSMLGDFHFNEFDSVNHS----------EAGVFLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLI 435
            A SAPL+F R L +    + LGP+   +++M+SD L F   + ++ML F+LAF+ +F               D   P   A+ TF R+++T+FS+ LG   F  +++              EAG+FL+++Y+ +M++ LLNLL+AVLSTAH++V +N +KE  L+ A LI
Sbjct: 1220 AASAPLLFSRLLVLSQIDATLGPMTQVIWRMISDTLRFSAFISVVMLSFALAFHAVFHTCGEFEDPTCNTNDDPDFPLRDAFGTFGRSFVTVFSAALGGPDFELYEAAGSECRCKLPDGAQEAGIFLMVVYMVIMAVVLLNLLIAVLSTAHSKVYDNGDKEFHLARAKLI 1389          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig965.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM43_ECTSI4.560e-3448.72Ankyrin repeat Transient receptor potential channe... [more]
A0A6H5KCQ6_9PHAE2.410e-3248.10Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FLB1_ECTSI2.600e-2339.49Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JB40_9PHAE7.930e-2241.51Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBU4_9PHAE2.720e-2140.79Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJG3_9PHAE9.230e-2140.25Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE5.790e-2039.86Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FZR6_ECTSI2.780e-1940.13Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FX79_ECTSI1.770e-1840.97Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LHA0_ECTSI4.610e-1836.47Transient Receptor Potential Channel. Partial sequ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig965contigD-mesarthrocarpus_Contig965:8640..9125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LM43
PFAMsIon_trans,WD40
Model size486
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue7.47e-35
EggNOG OGsKOG3676@1|root,KOG3676@2759|Eukaryota
Descriptioncalcium ion transmembrane transport
Cds size486
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791118.0613546-CDS-D-mesarthrocarpus_Contig965:8639..91251680791118.0613546-CDS-D-mesarthrocarpus_Contig965:8639..9125Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig965 8640..9125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig965.3.1prot_D-mesarthrocarpus_Contig965.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig965 8640..9125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig965.3.1

>prot_D-mesarthrocarpus_Contig965.3.1 ID=prot_D-mesarthrocarpus_Contig965.3.1|Name=mRNA_D-mesarthrocarpus_Contig965.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=162bp
MQAYSAPLVFGRALFVLHAHSALGPLVSAMFKMMSDLLVFGLIMVMIMLG
FSLAFYGLFGDGSVPAYSTFQRTWLTLFSSMLGDFHFNEFDSVNHSEAGV
FLLILYLCVMSLNLLNLLVAVLSTAHARVVENTEKESSLSEALLINHYRC
LKDLILRSNFL*
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mRNA from alignment at D-mesarthrocarpus_Contig965:8640..9125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig965.3.1 ID=mRNA_D-mesarthrocarpus_Contig965.3.1|Name=mRNA_D-mesarthrocarpus_Contig965.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=486bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig965:8640..9125+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAGGCCTACAGCGCGCCACTTGTCTTCGGCAGGGCGCTCTTTGTCCT CCACGCCCACTCTGCCCTTGGTCCCCTGGTGAGCGCTATGTTCAAAATGA TGTCAGACCTTCTGGTGTTCGGGCTGATCATGGTCATGATCATGCTGGGG TTCTCCCTCGCCTTCTATGGCCTCTTTGGGGATGGAAGTGTGCCTGCATA CTCCACGTTTCAGAGGACGTGGCTGACGCTGTTCTCATCCATGCTGGGGG ATTTCCACTTCAATGAGTTTGACAGTGTGAATCACAGCGAGGCTGGCGTC TTCCTGCTCATCCTTTACCTGTGCGTCATGTCCTTGAATCTGCTCAATTT ACTCGTCGCAGTGCTATCCACTGCCCACGCCAGAGTGGTGGAAAACACCG AGAAGGAGTCCTCGCTTTCTGAGGCCCTGCTCATCAACCATTACAGGTGC CTGAAGGATTTGATATTACGAAGTAATTTTTTATGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig965:8640..9125+

>mRNA_D-mesarthrocarpus_Contig965.3.1 ID=mRNA_D-mesarthrocarpus_Contig965.3.1|Name=mRNA_D-mesarthrocarpus_Contig965.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=486bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig965:8640..9125+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAGGCCTACAGCGCGCCACTTGTCTTCGGCAGGGCGCTCTTTGTCCT
CCACGCCCACTCTGCCCTTGGTCCCCTGGTGAGCGCTATGTTCAAAATGA
TGTCAGACCTTCTGGTGTTCGGGCTGATCATGGTCATGATCATGCTGGGG
TTCTCCCTCGCCTTCTATGGCCTCTTTGGGGATGGAAGTGTGCCTGCATA
CTCCACGTTTCAGAGGACGTGGCTGACGCTGTTCTCATCCATGCTGGGGG
ATTTCCACTTCAATGAGTTTGACAGTGTGAATCACAGCGAGGCTGGCGTC
TTCCTGCTCATCCTTTACCTGTGCGTCATGTCCTTGAATCTGCTCAATTT
ACTCGTCGCAGTGCTATCCACTGCCCACGCCAGAGTGGTGGAAAACACCG
AGAAGGAGTCCTCGCTTTCTGAGGCCCTGCTCATCAACCATTACAGGTGC
CTGAAGGATTTGATATTACGAAGTAATTTTTTATGA
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