mRNA_D-mesarthrocarpus_Contig9620.2.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9620.2.2
Unique NamemRNA_D-mesarthrocarpus_Contig9620.2.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A8D0YTB0_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YTB0_PIG)

HSP 1 Score: 103 bits (257), Expect = 2.460e-27
Identity = 53/67 (79.10%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:   19 DPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            DPF LKEWYDIKAPSIFQVR PGKTLVTRTKGT          KIASEGLKGR+FEFSLGDLN DED
Sbjct:   21 DPFTLKEWYDIKAPSIFQVRNPGKTLVTRTKGT----------KIASEGLKGRVFEFSLGDLNNDED 77
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: D7FKH7_ECTSI (40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.560e-25
Identity = 53/67 (79.10%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:   19 DPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            DP  LKEWYDIKAPSIFQVR PGKTLVTRTKGT          KIASEGLKGR+FEFSLGDLNADED
Sbjct:   21 DPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGT----------KIASEGLKGRVFEFSLGDLNADED 77
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A7S2F6Z9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F6Z9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.250e-21
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   16 SDPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            SDPFL KEWY++KAPS+F VR  GKTL+TRT GT          KIASEGLKGR+FE SL DLN DED
Sbjct:   36 SDPFLKKEWYEVKAPSVFSVRKVGKTLITRTTGT----------KIASEGLKGRVFEVSLADLNNDED 93
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A7S4Q8A2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q8A2_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 1.380e-21
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   13 RSDPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            ++DPFL KEWYD+KAPS+F  R PGKTL+T+T+GT          KIASEGLKGR+FEFSL DLN DE+
Sbjct:   23 QADPFLKKEWYDLKAPSMFSNRNPGKTLITKTQGT----------KIASEGLKGRVFEFSLADLNNDEE 81
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A7S2Y1J4_9STRA (40S ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.130e-21
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   16 SDPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            +DPFL KEWYD+KAPS F  RTPGKTL+TRT+GT          KIASEGL+GR+FEFSL DLN DE+
Sbjct:   46 TDPFLKKEWYDVKAPSFFSNRTPGKTLITRTQGT----------KIASEGLQGRVFEFSLADLNHDEE 103
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A7S3K3W2_9STRA (40S ribosomal protein S3a n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3W2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-19
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   16 SDPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            +DPFL KEWY++KAP++F VR  GKTLVTRT+G          +K+AS+GLKGR+FEFSL DLN DED
Sbjct:   21 TDPFLKKEWYEVKAPNMFSVRKAGKTLVTRTQG----------QKVASDGLKGRVFEFSLADLNKDED 78
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A5B7A155_DAVIN (Putative 40S ribosomal protein S3a n=2 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7A155_DAVIN)

HSP 1 Score: 84.7 bits (208), Expect = 3.090e-19
Identity = 43/68 (63.24%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   16 SDPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            +DPF  K+WYDIKAPS+F VR+ GKTLVTRT+GT          KIASEGLK R+FE SL DL  DED
Sbjct:   21 ADPFAKKDWYDIKAPSVFNVRSVGKTLVTRTQGT----------KIASEGLKHRVFEISLADLQGDED 78
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A218XSJ7_PUNGR (40S ribosomal protein S3a n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218XSJ7_PUNGR)

HSP 1 Score: 87.8 bits (216), Expect = 3.560e-19
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 MILIRSDPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            ++L R+DPF  K+WYDIKAPS+F V+  GKTLVTRT+GT          KIASEGLK R+FE SL DL  DED
Sbjct:   72 LLLCRADPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGT----------KIASEGLKHRVFEISLADLQGDED 134
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A835Z1K4_9STRA (40S ribosomal protein S3a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.940e-19
Identity = 45/67 (67.16%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   19 DPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            DPF  KEWYDIKAPS F VR  GKTL+TRT GT          KIASEGLKGR+FE SLGDLN DE+
Sbjct:   22 DPFTRKEWYDIKAPSTFAVRNAGKTLITRTTGT----------KIASEGLKGRVFEVSLGDLNNDEE 78
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Match: A0A7S4E908_9STRA (40S ribosomal protein S3a n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E908_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.460e-19
Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   19 DPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEKIASEGLKGRIFEFSLGDLNADED 219
            DPFL KEWY+IKAPS+F VR  GKTLVTRT+GT          KIAS+ LKGR+FE SLGDLN DED
Sbjct:   48 DPFLKKEWYEIKAPSMFSVRNCGKTLVTRTQGT----------KIASDALKGRVFEISLGDLNNDED 104
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9620.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D0YTB0_PIG2.460e-2779.10Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
D7FKH7_ECTSI1.560e-2579.1040S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2F6Z9_9STRA1.250e-2166.18Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4Q8A2_9DINO1.380e-2163.77Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2Y1J4_9STRA7.130e-2166.1840S ribosomal protein S3a n=1 Tax=Fibrocapsa japon... [more]
A0A7S3K3W2_9STRA1.550e-1961.7640S ribosomal protein S3a n=1 Tax=Aureoumbra lagun... [more]
A0A5B7A155_DAVIN3.090e-1963.24Putative 40S ribosomal protein S3a n=2 Tax=Davidia... [more]
A0A218XSJ7_PUNGR3.560e-1960.2740S ribosomal protein S3a n=1 Tax=Punica granatum ... [more]
A0A835Z1K4_9STRA3.940e-1967.1640S ribosomal protein S3a n=1 Tax=Tribonema minus ... [more]
A0A7S4E908_9STRA4.460e-1967.1640S ribosomal protein S3a n=3 Tax=Pelagomonas calc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9620contigD-mesarthrocarpus_Contig9620:4399..4746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKH7
Preferred nameRPS3a
PFAMsRibosomal_S3Ae
Model size219
Max annot lvl2759|Eukaryota
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue2.56e-26
EggNOG OGsCOG1890@1|root,KOG1628@2759|Eukaryota
EC5.3.1.6
Descriptionstructural constituent of ribosome
Cds size219
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791116.2744377-CDS-D-mesarthrocarpus_Contig9620:4398..45461680791116.2744377-CDS-D-mesarthrocarpus_Contig9620:4398..4546Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9620 4399..4546 +
1680791116.2915466-CDS-D-mesarthrocarpus_Contig9620:4675..47461680791116.2915466-CDS-D-mesarthrocarpus_Contig9620:4675..4746Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9620 4676..4746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9620.2.2prot_D-mesarthrocarpus_Contig9620.2.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9620 4399..4746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9620.2.2

>prot_D-mesarthrocarpus_Contig9620.2.2 ID=prot_D-mesarthrocarpus_Contig9620.2.2|Name=mRNA_D-mesarthrocarpus_Contig9620.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=73bp
MILIRSDPFLLKEWYDIKAPSIFQVRTPGKTLVTRTKGTSESCFPYILEK
IASEGLKGRIFEFSLGDLNADED
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9620:4399..4746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9620.2.2 ID=mRNA_D-mesarthrocarpus_Contig9620.2.2|Name=mRNA_D-mesarthrocarpus_Contig9620.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=348bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9620:4399..4746+ (Discosporangium mesarthrocarpum MT17_79)
ATGATTCTTATCAGGTCTGACCCTTTCCTCCTCAAGGAATGGTATGACAT
CAAGGCCCCCTCCATCTTCCAGGTCCGCACCCCTGGCAAGACCCTCGTCA
CCCGGACCAAGGGGACCAGTGAGTCATGCTTCCCTTATATTTTAGAAAGT
TGAAGGTGACTATTGAGTGTAGGGTATGTTTATCCGGTGAACGAATCCTC
CGAACGGTTCCATCTCCAATGGATAAACTCTCATTCATTGGCCACTTGAA
ACCTACCCTTGCATCCTTGGCCTACAGAAATTGCCTCGGAGGGGCTCAAG
GGACGCATTTTTGAATTCTCCCTGGGGGACCTGAACGCTGATGAGGAT
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9620:4399..4746+

>mRNA_D-mesarthrocarpus_Contig9620.2.2 ID=mRNA_D-mesarthrocarpus_Contig9620.2.2|Name=mRNA_D-mesarthrocarpus_Contig9620.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9620:4399..4746+ (Discosporangium mesarthrocarpum MT17_79)
ATGATTCTTATCAGGTCTGACCCTTTCCTCCTCAAGGAATGGTATGACAT
CAAGGCCCCCTCCATCTTCCAGGTCCGCACCCCTGGCAAGACCCTCGTCA
CCCGGACCAAGGGGACCAGTGAGTCATGCTTCCCTTATATTTTAGAAAAA
ATTGCCTCGGAGGGGCTCAAGGGACGCATTTTTGAATTCTCCCTGGGGGA
CCTGAACGCTGATGAGGAT
back to top