mRNA_D-mesarthrocarpus_Contig962.6.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig962.6.2
Unique NamemRNA_D-mesarthrocarpus_Contig962.6.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig962.6.2 vs. uniprot
Match: A0A7S4FJI3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FJI3_9EUGL)

HSP 1 Score: 76.6 bits (187), Expect = 5.870e-13
Identity = 70/219 (31.96%), Postives = 105/219 (47.95%), Query Frame = 1 
Query:    1 GVPHGTQAEIEAQIIYAVERSNAHREGGEGFLVVTSIRCGPTSRLLMGKAFRSAL-DTLCAIYPYNPNT-GVVLMDVPRAAKWCMKLSNVIVFNILPALKSLSFVS----SKADLANLIPAESRLPEWGGTFHGGLGEEYILARAAAEGCPVTDEVREYNPKSSQVGT-DAPDDPMNSMSLTEAMVANPVLVGTLWKRGRGGILGSSRWKRKAFVLLES 636
            G+  G++ ++  Q++YA++R  A+        +V  +    +S  +  K FR+A+ DTL   YP+  ++ GV  +D P   KW  K+     F     +    F+S     K      I  E+RLP+WGG       E YI  RA AEG  V  E+   + ++  V T D   +     S  EA        G LWKRG GG+LG+++WKRK F + ES
Sbjct:   37 GMFGGSRTDLVRQVLYAMDRIWANMPADRPPKMVWVMEVVASSYRIPDKDFRTAVFDTLKCQYPWMKHSEGVYFLDAPNVVKWGFKIMGN--FFDKDEMAKFHFISRSQWQKQSFG--ISPENRLPDWGGGTLRFDIESYIAERARAEG--VDPEL--CSAQNCAVATVDTAIEHKIRCSAAEAKEL-ATFCGYLWKRGSGGLLGNTKWKRKYFAVFES 246
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BLAST of mRNA_D-mesarthrocarpus_Contig962.6.2 vs. uniprot
Match: A0A7S1NGA3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NGA3_9EUGL)

HSP 1 Score: 63.9 bits (154), Expect = 1.780e-8
Identity = 69/219 (31.51%), Postives = 99/219 (45.21%), Query Frame = 1 
Query:    1 GVPHGTQAEIEAQIIYAVERSNAHREGGEGFLVVTSIRCGPTSRLLMGKAFRSA-LDTLCAIYPYNPNTGVVLM-DVPRAAKWCMKLSNVIVFNI-LPALKSLSFVSSKADLANLIPAESRLPE--WGGTFHGGLGEEYILARAAAEGCPVTDEVREYNPKSSQVGTDAPDDPMNSMSLTEAMVANPVLV--GTLWKRGRGGILGSSRWKRKAFVLLES 636
            G+  GTQA++  Q++Y ++R  A         VV  +    +S  +  K FR+A +DT+ +  P+  +T  V M   P   KW  K  N       L   K L+    +A L +L+   +R P    GG       E YI  RA AEG      +   +  SS + T    D +       A  A  + +  G +WKRG GG+ GS+RWKRK FV  ES
Sbjct:   98 GMITGTQAQLTRQVLYVLDRVWALMPACCPPKVVWIMDVKLSSFRIPDKDFRAAVIDTMRSHCPWISSTEFVYMVGAPSVIKWGFKSLNAFFDKQELAKFKFLTAAEFRA-LDDLVVDPARQPGNGCGGHIMDFDVEGYITQRALAEG------INPQDCSSSALRTAPMVDTVEQTITFSAQEARELALYAGFIWKRGSGGLFGSTRWKRKYFVAFES 309
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig962.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4FJI3_9EUGL5.870e-1331.96Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1NGA3_9EUGL1.780e-831.51Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig962contigD-mesarthrocarpus_Contig962:14646..16389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size640
Hectar predicted targeting categoryother localisation
Exons3
Cds size636
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791115.9589527-CDS-D-mesarthrocarpus_Contig962:14647..148311680791115.9589527-CDS-D-mesarthrocarpus_Contig962:14647..14831Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig962 14648..14831 -
1680791115.971223-CDS-D-mesarthrocarpus_Contig962:15208..153641680791115.971223-CDS-D-mesarthrocarpus_Contig962:15208..15364Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig962 15209..15364 -
1680791115.9815135-CDS-D-mesarthrocarpus_Contig962:16093..163891680791115.9815135-CDS-D-mesarthrocarpus_Contig962:16093..16389Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig962 16094..16389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig962.6.2prot_D-mesarthrocarpus_Contig962.6.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig962 14648..16389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig962.6.2

>prot_D-mesarthrocarpus_Contig962.6.2 ID=prot_D-mesarthrocarpus_Contig962.6.2|Name=mRNA_D-mesarthrocarpus_Contig962.6.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=212bp
GVPHGTQAEIEAQIIYAVERSNAHREGGEGFLVVTSIRCGPTSRLLMGKA
FRSALDTLCAIYPYNPNTGVVLMDVPRAAKWCMKLSNVIVFNILPALKSL
SFVSSKADLANLIPAESRLPEWGGTFHGGLGEEYILARAAAEGCPVTDEV
REYNPKSSQVGTDAPDDPMNSMSLTEAMVANPVLVGTLWKRGRGGILGSS
RWKRKAFVLLES
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mRNA from alignment at D-mesarthrocarpus_Contig962:14646..16389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig962.6.2 ID=mRNA_D-mesarthrocarpus_Contig962.6.2|Name=mRNA_D-mesarthrocarpus_Contig962.6.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1744bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig962:14646..16389- (Discosporangium mesarthrocarpum MT17_79)
GGCGTTCCCCATGGGACTCAGGCTGAGATCGAGGCCCAGATCATCTACGC
GGTTGAGCGTTCTAATGCTCATCGGGAGGGCGGTGAGGGATTCCTTGTGG
TAACGAGCATACGGTGTGGACCCACGTCTAGGCTACTCATGGGGAAGGCA
TTTCGGTCCGCCCTTGACACGCTCTGTGCGATATATCCATACAATCCGAA
CACAGGGGTCGTTCTTATGGATGTTCCACGCGCGGCAAAGTGGTGCATGA
AGCTCAGCAATGTGATCGTATTCAACATTTTGCCAGCATTGAAGAGGTGA
TAATGCTTCTTATCATGGAATGATCCTTCCACGGTAGTCACCTGTTGGTT
GTTGGTTGATTTCTTGATTTCTGACGCAGTAAGCATTCATAGTGGCACTC
GGAGTTCATAAGAATCACGTGCAGTGCTCCAGTTGGCGACATTTGCAGAA
CGTCACGCACCGTGATACGTTATCGTGGCAAGTTGGATGTGGGGCTTGCG
GCAGCGTTTTGAGTCACAGGTTCCTGCAATATGATGTTGCCCGGTGGGTG
ATATCCGTGCCCGCTGTCACGTGCCCGAGACCTCACAGAGCGCATTGGTC
ACCGATGTATTTTCTCGTGCCCCTGACCTGTAATACCAAAGCTGTCCTAT
TAGATTTTTAACGAAAACGAACTGCTAGTTGTTGCAGGAATACCTCCAAG
TTTTGTGTGACCGCTGCGCTATCGTACTTGAAGGGTATGTGACGTGGCAG
TGAATGGTGAACCTCAGTCTTACCCCCTGCAGCTATTCAGAGTAATCTAT
CAGGGTAGTTCCAAGGACAACCATGTCAATTGGAGGCGGTTGTCGATTGC
GTAAAGTCTACGAAAACCTGATCCCCTCCGTTTTTTGCCACATGCCCACA
GCTTTTCGTCAGTCATCAGTGTAGTGCTAAGCGGTCTCACAACATTTCAA
GTGAAGGTGGTCGTCGGTCACCCCTAAGCCTTGCGAAACCTGGTCCCCTT
TATTCATGTGGCCACATCAATGCAGCCTGTCATTCGTATCAAGCAAAGCT
GACCTGGCCAACCTCATCCCTGCGGAGAGCCGGCTTCCAGAATGGGGCGG
CACCTTCCACGGCGGTTTGGGGGAGGAGTACATTCTGGCTAGAGCAGCAG
CCGAAGGATGCCCTGTGACGGATGAAGTCAGGTGCAGGGAAGGCGTATTG
CGTGCATGTGGGGATTGATGGAGTGGGAGGGGGCGTGGATAGCTCAGGCA
GAAGGGGGGGGGAGATCCCTCCATTCATTGGGTGTTTAAGGTGACATCAA
TGACATTGACCCCAATTACAGTAGAGCTCTAGAGAGAGTTGACTTAGTTT
CACATTGCTGCAATGAACTCAGTTTCACCTCTGGGTTCCCCTCCTGACCA
CCCAAGGTTGATCGTTGCAGTCATGTGTGCGGCAGACAGCTACCAGGAAG
CTGTTGGAACTCTCCGTTCTCCCCGTGCCTCACACGGACTGTACTATGCC
TGCCCTTCCGTTTCATGCCGTGTATGATGATTGAAAATCCCGGGCATTAC
GTCAGCAGGGAGTATAACCCCAAGTCTTCCCAAGTGGGCACAGACGCCCC
CGATGACCCCATGAACTCGATGTCCCTCACCGAGGCGATGGTGGCGAACC
CTGTGCTGGTAGGCACACTCTGGAAGCGGGGGCGCGGAGGCATCCTGGGA
TCCTCCCGGTGGAAGAGGAAGGCCTTTGTGCTCCTGGAGTCTCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig962:14646..16389-

>mRNA_D-mesarthrocarpus_Contig962.6.2 ID=mRNA_D-mesarthrocarpus_Contig962.6.2|Name=mRNA_D-mesarthrocarpus_Contig962.6.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=636bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig962:14646..16389- (Discosporangium mesarthrocarpum MT17_79)
GGCGTTCCCCATGGGACTCAGGCTGAGATCGAGGCCCAGATCATCTACGC
GGTTGAGCGTTCTAATGCTCATCGGGAGGGCGGTGAGGGATTCCTTGTGG
TAACGAGCATACGGTGTGGACCCACGTCTAGGCTACTCATGGGGAAGGCA
TTTCGGTCCGCCCTTGACACGCTCTGTGCGATATATCCATACAATCCGAA
CACAGGGGTCGTTCTTATGGATGTTCCACGCGCGGCAAAGTGGTGCATGA
AGCTCAGCAATGTGATCGTATTCAACATTTTGCCAGCATTGAAGAGCCTG
TCATTCGTATCAAGCAAAGCTGACCTGGCCAACCTCATCCCTGCGGAGAG
CCGGCTTCCAGAATGGGGCGGCACCTTCCACGGCGGTTTGGGGGAGGAGT
ACATTCTGGCTAGAGCAGCAGCCGAAGGATGCCCTGTGACGGATGAAGTC
AGGGAGTATAACCCCAAGTCTTCCCAAGTGGGCACAGACGCCCCCGATGA
CCCCATGAACTCGATGTCCCTCACCGAGGCGATGGTGGCGAACCCTGTGC
TGGTAGGCACACTCTGGAAGCGGGGGCGCGGAGGCATCCTGGGATCCTCC
CGGTGGAAGAGGAAGGCCTTTGTGCTCCTGGAGTCT
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