mRNA_D-mesarthrocarpus_Contig9586.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9586.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9586.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9586.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9586contigD-mesarthrocarpus_Contig9586:3084..3712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size629
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.6407075-UTR-D-mesarthrocarpus_Contig9586:3083..31291680791112.6407075-UTR-D-mesarthrocarpus_Contig9586:3083..3129Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9586 3084..3129 +
1680791112.6637213-UTR-D-mesarthrocarpus_Contig9586:3498..37121680791112.6637213-UTR-D-mesarthrocarpus_Contig9586:3498..3712Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9586 3499..3712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.6504872-CDS-D-mesarthrocarpus_Contig9586:3129..34981680791112.6504872-CDS-D-mesarthrocarpus_Contig9586:3129..3498Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9586 3130..3498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9586.2.1prot_D-mesarthrocarpus_Contig9586.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9586 3130..3498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9586.2.1

>prot_D-mesarthrocarpus_Contig9586.2.1 ID=prot_D-mesarthrocarpus_Contig9586.2.1|Name=mRNA_D-mesarthrocarpus_Contig9586.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=123bp
MTMLDCTQGECQAPTSRSFKFLLKRGQGYCFGLRWVGPSLWPGCVCMLCL
RKVQRFEARLSVQDWVGARTGGFALARCHAQPYSVATRFFFVVFVRRSSL
WEGVPRGVGSWLQRFPVSSEAC*
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mRNA from alignment at D-mesarthrocarpus_Contig9586:3084..3712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9586.2.1 ID=mRNA_D-mesarthrocarpus_Contig9586.2.1|Name=mRNA_D-mesarthrocarpus_Contig9586.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=629bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9586:3084..3712+ (Discosporangium mesarthrocarpum MT17_79)
GGGAAGCCGGGGGGTGGGGGGGGCGGGTGGGGGTTGGCGCGCGGTGATGA
CGATGTTAGATTGCACACAAGGCGAATGTCAAGCTCCCACTTCTCGTTCC
TTTAAGTTCCTTTTAAAGAGAGGCCAGGGGTATTGCTTTGGCTTGCGATG
GGTAGGCCCTTCGCTGTGGCCTGGCTGTGTGTGCATGCTATGTCTGCGGA
AGGTTCAACGGTTTGAGGCACGGTTGTCCGTGCAAGATTGGGTGGGTGCA
AGGACGGGTGGTTTCGCCTTGGCTAGGTGTCATGCCCAGCCATATTCAGT
AGCAACACGTTTTTTTTTTGTTGTTTTTGTCAGGCGGAGCTCCTTGTGGG
AGGGGGTTCCTCGTGGGGTGGGGTCCTGGTTGCAACGATTCCCAGTTTCA
TCTGAGGCCTGTTAAATGCTTGCGGTGTGCTTCCCACAGCGCTTGCAAGC
CTCCCTGCTTTCCTTGGTATGTACTCAGATTACCATCAGATATTTTGGAC
CACCCGCCCTCCCGCCGCCACAGCTATCCACACACCGATGCTCTCCCCAG
TCATTTAATATATTCTACATACACTGCGATGGTAGAAAATGCATTTTGGG
GGGTCAGTCTCTACAGGAGAAATGTTGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9586:3084..3712+

>mRNA_D-mesarthrocarpus_Contig9586.2.1 ID=mRNA_D-mesarthrocarpus_Contig9586.2.1|Name=mRNA_D-mesarthrocarpus_Contig9586.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=369bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9586:3084..3712+ (Discosporangium mesarthrocarpum MT17_79)
ATGACGATGTTAGATTGCACACAAGGCGAATGTCAAGCTCCCACTTCTCG
TTCCTTTAAGTTCCTTTTAAAGAGAGGCCAGGGGTATTGCTTTGGCTTGC
GATGGGTAGGCCCTTCGCTGTGGCCTGGCTGTGTGTGCATGCTATGTCTG
CGGAAGGTTCAACGGTTTGAGGCACGGTTGTCCGTGCAAGATTGGGTGGG
TGCAAGGACGGGTGGTTTCGCCTTGGCTAGGTGTCATGCCCAGCCATATT
CAGTAGCAACACGTTTTTTTTTTGTTGTTTTTGTCAGGCGGAGCTCCTTG
TGGGAGGGGGTTCCTCGTGGGGTGGGGTCCTGGTTGCAACGATTCCCAGT
TTCATCTGAGGCCTGTTAA
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