mRNA_D-mesarthrocarpus_Contig9582.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9582.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9582.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9582.1.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 6.230e-16
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   79 HVEEMGLSGAVKGMDPSDGTLTYKPNSMVAWREKETLEKMKNTAFQLAKERFNREEGLQSLNLCGSTNVGDSGVAALAKQCNTLR 333
            H++ MGL+ A KGMDPS G   +  +SMVAWREK+TLE+MK+   + A++RF  +EGL SL++ G+  VGDSGVA L  QC  L+
Sbjct:   16 HIDAMGLTAAFKGMDPS-GVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 99
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9582.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI6.230e-1652.94Hypothetical leucine rich repeat calmodulin bindin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9582contigD-mesarthrocarpus_Contig9582:1..4627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LPS0
PFAMsF-box-like,IQ,LRR_1,LRR_6
Model size1017
Max annot lvl2759|Eukaryota
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons8
Evalue9.88e-17
EggNOG OGsKOG1947@1|root,KOG4341@1|root,KOG1947@2759|Eukaryota,KOG4341@2759|Eukaryota
Descriptionmodulation by host of viral RNA genome replication
Cds size1011
COG categoryKLT
BRITEko00000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9582.1.1prot_D-mesarthrocarpus_Contig9582.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9582 1..4621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.4953134-CDS-D-mesarthrocarpus_Contig9582:0..1021680791112.4953134-CDS-D-mesarthrocarpus_Contig9582:0..102Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9582 1..102 -
1680791112.5129745-CDS-D-mesarthrocarpus_Contig9582:392..5271680791112.5129745-CDS-D-mesarthrocarpus_Contig9582:392..527Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9582 393..527 -
1680791112.5270095-CDS-D-mesarthrocarpus_Contig9582:915..10231680791112.5270095-CDS-D-mesarthrocarpus_Contig9582:915..1023Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9582 916..1023 -
1680791112.54757-CDS-D-mesarthrocarpus_Contig9582:1733..18891680791112.54757-CDS-D-mesarthrocarpus_Contig9582:1733..1889Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9582 1734..1889 -
1680791112.5620584-CDS-D-mesarthrocarpus_Contig9582:2326..24631680791112.5620584-CDS-D-mesarthrocarpus_Contig9582:2326..2463Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9582 2327..2463 -
1680791112.575045-CDS-D-mesarthrocarpus_Contig9582:3054..32081680791112.575045-CDS-D-mesarthrocarpus_Contig9582:3054..3208Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9582 3055..3208 -
1680791112.58619-CDS-D-mesarthrocarpus_Contig9582:3559..37151680791112.58619-CDS-D-mesarthrocarpus_Contig9582:3559..3715Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9582 3560..3715 -
1680791112.599716-CDS-D-mesarthrocarpus_Contig9582:4558..46211680791112.599716-CDS-D-mesarthrocarpus_Contig9582:4558..4621Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9582 4559..4621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.6085818-UTR-D-mesarthrocarpus_Contig9582:4621..46271680791112.6085818-UTR-D-mesarthrocarpus_Contig9582:4621..4627Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9582 4622..4627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9582.1.1

>prot_D-mesarthrocarpus_Contig9582.1.1 ID=prot_D-mesarthrocarpus_Contig9582.1.1|Name=mRNA_D-mesarthrocarpus_Contig9582.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=337bp
MIADKNRETLEKLAHQNSIEQVQNHVEEMGLSGAVKGMDPSDGTLTYKPN
SMVAWREKETLEKMKNTAFQLAKERFNREEGLQSLNLCGSTNVGDSGVAA
LAKQCNTLRNLNLSGACQITDLSIWSLAKNCTCITSLNLAGCISISGAGL
AVLGECCPNIAQLNLSGCKQVGHWVLTRVFRGCPSLEVILLDDCPKVGDQ
ELKELAAGCKGLTKAALKNCKQVSDAGILEVTRRCNNLQWLDLSRSELTF
KVGDVAMLALGEGCPGLQWLDVSGCDGLTDVGLSWMTMGCPALLHLNIGG
CIKVSNAGVTSLSENCHDLKYLGLRGLKYVTDMGVAQ
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mRNA from alignment at D-mesarthrocarpus_Contig9582:1..4627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9582.1.1 ID=mRNA_D-mesarthrocarpus_Contig9582.1.1|Name=mRNA_D-mesarthrocarpus_Contig9582.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4627bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9582:1..4627- (Discosporangium mesarthrocarpum MT17_79)
CTTCGGATGATTGCCGACAAAAATAGGGAAACACTTGAAAAGCTAGCTCA
CCAGAATAGTATTGAACAGGTGAGCGTTGGATCTTCTACTCTTTTGCTTG
CATGATGGGCAACACACTAGGGAATGGGGAGGAATATTCAGTGGGTGGGT
GCAACACATGGATGGGCAGATGAATCAAGAAAACAATGAACGGCTGCATG
TGATTACCTGAGGAACCTGAGTGAATCAGTGACCTACGCCTAAGATCATA
TTCTGGGACATCGTGTGCTCCGGTTTGTGAGTGACGCAAGTGACTTGTTA
CCGGGCCTTGGAAGACTTCCCAATCATCTTTCACACCTTGGACAACATAT
ACTACCTTGAATAGCATAATGGTATCCACATGATGGAAGGGTCCCATTTC
ATATCTAGCATATAGTCTCTGTATATCGTGTAAGGGGTCTGAACCTTGTG
CATCTTACATCTGGCTACTTCAAAGAAAGATATTTCTCCCACACGATACC
ACTTTTGGTTATCCCATTGTGTACTTCAGTGTACCTTAAATTGTCATTTT
TGTTATCCGGGGTGTTCATTTTAAATCGCTTGTGAGCAGTGTGAACTGCC
TATGTTCCAGAGTTCCTCTCACAAACCTTGGGTTTGGGAAGATAACAGTA
TGTTAGGGAAGAACTGTCAAACTTCCGGGGTCCCTTTCACCGATTTTGAC
CCACCTGGAATAAGAATTAGAAGGGATTGATATTTGAAGTACGAAGGCTA
GAATAAAAGACTAATAGAAATACTAGCCATAGCCCAAACCCTAACCCTAA
CCCTAACCCTATAACTCAAAGCACTCAATATAAGACTAAATCAAGCTTTC
TTATGCCATGTTTCAAGTTTGCGAGCTTGCATTGACATGGCTACCCTTCT
TGTACTGATCAGGTTCAAAATCATGTGGAAGAGATGGGATTGTCTGGTGC
TGTAAAAGGCATGGATCCATCCGATGGCACTCTTACGTATAAGCCCAATT
CCATGGTGGCATGGAGAGAGAAGGAAACCTTGGAGAAGATGAAAAATACT
GCCTTCCAACTTGCAAAGGTTTGTGCATAGAAATTAGGGTTAGGGTTAGA
AGTATCTTCCCTAACCCTAATCCTTTAGAGGTATCTTGTAGTTCAAATAA
AAATGCTTCCCTTGTGTATAACCCTAACCCTAACCCCAAGTATTAGAAGT
ATCTTGCAGTTCAAATTAGAATGCGTCCCTCATTTATAACCCTACCACTA
ACCGTAACCCTATACCTAACCCTTACCCAAAAGTATAAAGAGAAATGGGG
TCTATCATGTGTGTCCTCTCCATGATGAAGATCGCACTTCTCTGCTGGTT
GTGGCTCTCATTAACTCTAACCCTAACCCTAAGAGCACCTGCATCTTTGA
AACCGCGTGCATTGCATAGGAAAGATTCAATAGAGAGGAGGGCCTCCAAT
CCCTTAACTTATGTGGTTCCACCAACGTGGGTGATTCTGGAGTGGCAGCA
CTTGCCAAGCAGTGCAACACATTGAGGAATTTGAATCTGTCAGGGGCGTG
CCAGATCACAGACTTGTCCATATGTGAGATTTTTCCATGCTTTTTTTTGT
CATGTGGTTTATGAACTTGAAGAAGGCATCGGAGAAAAATATACTTTGAA
GAATATACTTTGAAAAATATACTTTGAAGAATATACTTTGAAAAATATAC
TTTGAAGAATATACTTTGAAAAATATGCTTTGAAGAATATACTTTGAAAA
ATATACTTTGAAGAATATACTTTGAAAAATATACTTTGAAGAATATACTT
CGAAGAACATAATTACTCCAGACGCCTCCTTCATTCTCTATGGAAACAAG
ATCTGTGCAGACTTAACCAAGTTTATGCAGAGCTGCGGGTCATGGAAAGT
GCAGGGATAGCAAAGTGCATACTGTGATAATATTGCGTATGTGGTACTTT
GCATCAAGGTCTAGGGACATACACGTAGACAACGGTTTCCTATGGGCACA
GGATACACCCTTGCACACTTCACTGTTTCCCACTCTTTGCTGCACTCATT
TTGTGAGCAGTTCACTTTTGTGTACTTGATTAAGATAGCATGAGAGATGA
AATGCATGAATTTGTATTGCACCTACACCAAACAGATAATTTTTGAAAAC
CTCACCATTACCAGGGTCACTGGCAAAGAACTGCACATGCATAACCAGCT
TGAACCTGGCGGGGTGCATTAGCATCTCTGGTGCAGGGCTGGCTGTGTTG
GGAGAATGCTGCCCGAACATTGCCCAGCTGAACCTTTCTGGCTGCAAGCA
GGTGAGATCTCAAGATTAAAGTTTCATGTTGTACATCTAACCCTAAACCT
AAGTGTTCCATGCACGACTAAATCACTGTGACTCACACAAGAGGACACCT
GAGATGGAATAGCTCCCTACATGGAATAAAATCATTTGCATATCAGTAGA
ACCTTCTCCATGCCACTGTACTCATGCATGCATGAGCGCACCAGTACTGC
TTAGTCTTGCTTTGGCACCTATCAAATGCGCCGTTACTCTTCTACCATTG
CTCTTTTGCGGTTTCTGGTGATATGTTGTGCACATGTTGGTTCATACAAA
TGGTCACAATGGTGAAATCCAACCTGGTGCAATGGACACACTCTGGCAAG
GAACAGGTTGGTAAACGTCATGGACTAGCTCTTGAAATTACTCTCACTTT
GACAAAATAAATGGAGAAACTGGTAATCTCAACACCAGGTTGGCCACTGG
GTGCTGACCAGAGTGTTCCGAGGATGCCCCTCACTGGAAGTGATACTGCT
TGACGATTGCCCTAAAGTTGGAGACCAAGAGCTCAAGGAGCTTGCAGCTG
GGTGCAAAGGGCTGACAAAGGCAGCCTTGAAGAATTGCAAGCAGGTCAAC
TAAACTAGCTTTAAGATCGAGGATTTCTGCTTTAAGTGCAGAGTGTTAGG
GATCACCAATACTGACTTCCACCACACCTAACCCTAACCCGACGGTTGTA
ACTTATTCTTAAACCTAAACCTAAGTTTTGCATTAAGAGTACTAACCCTA
ACCATAGAGCCAAAGAGCACCTGGCGCACAGCATAGTCATGATAGTGATA
CAAAGTACTGCAAAGATGAAAAGATGTGGAGATTTGGAAGTTTTCACCCT
TCACCATTGGCAAACCCTTTGTCCTCTCGGGGTTAGGGTTACTAAACACA
TTTACAGCAAACTTTATGGACCTTTGAGTGTGAGGTGATTTGCATTCTAC
CTGGAGAAGGGGTACTCTGCATGTTTGTGGCTTGGAAATTGTCAATCGAC
TCTGCATGTTGTGACATGACAATTGTTGCTCAAGGTGTACTCCTCCTTTG
ACTCTGCCTATTTGTTTCATGGCAATTGTTGCTCAACGTGTACTCCTCCT
TTGGCTCTGCCTATTGGTTTCATGGCCATTGTTGCTCAAGGTGTATTTCT
CAAATGAGGTACCACAACAAATTTCAATGATTGTTGCTCCTTAGTTTTCA
GTGATCTGTGTACACTGACGGATGAGTTCCTCATGCAGCCCCCACCACCT
TCCACGTTCTCCATTTCTATTATTTGTTTTGACCCAATATGAAAAAATGA
GGAGGTGTCTGATGCAGGCATATTGGAAGTGACAAGGAGGTGCAACAATC
TTCAATGGCTTGACCTTTCTCGTTCAGAGCTCACATTCAAAGTTGGTGAT
GTCGCCATGTTGGTAAGCCAGAGTAAGCTAATAAGCCATTCACAGCAATG
TAATATTGCCTTCACCCTAAGTGTGACCCTAACCCTAACCCTAACCCTAG
CCCTAACCCCAACCCTTCAAATCCATATCAAAGTCTTGCCTTTACTGGAC
CTTGGCGACCAAATAGTTTGTATGCTGAAGTAGTATGTTGAAGTAATATG
TTGAAGTAGTATGTTGAAGTAGTATATTGGAGTGGCATGTTGAATTAGCA
TGTTGAAGTGCTTTCAATATTTTGCCAGATTGCTCTAACCCTGTCCTTAA
CCCTAAAGAGCCCTCATCAGCATACTTTGCTTTGAGTACCTCCACAAATT
GTAACCCTAACCCTAATTAACACACAGTACCATGTCAATCTAATATCCAG
GCTTTGGGAGAGGGGTGCCCGGGACTGCAGTGGCTGGATGTGAGTGGATG
TGATGGTTTGACTGATGTTGGTCTGAGCTGGATGACGATGGGTTGCCCAG
CCCTCCTACATCTCAACATAGGAGGCTGCATCAAGGTTAAGTTGATCAAG
AAAATGGAGAGAACAAAAACAGCTCCAATGAAGAATTTGTGGATACCCTA
ACCCTAACCCTAACCCTTTTTCCGGGAAATTACGTTAAGATTTCATTTTG
AAAAAGTCCTAAAAGTGGTCATTGATATGTTTCCCGACCTGAGGATGAGT
CTAAACCCTAACCCTAACCCTAACCCTAAAGCTAACTGTAGGTCTAAATC
TAACTATAGACCCGATCCTCTCCAACCCCAAATCTAACTGAAATCAACTG
TGACAATAAAACAATCCCGAGCCAGGTGTCAAATGCTGGTGTGACTAGTC
TATCGGAAAATTGCCATGACCTCAAATATCTTGGTCTCAGGGGACTCAAA
TATGTCACGGACATGGGAGTGGCACAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9582:1..4627-

>mRNA_D-mesarthrocarpus_Contig9582.1.1 ID=mRNA_D-mesarthrocarpus_Contig9582.1.1|Name=mRNA_D-mesarthrocarpus_Contig9582.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1011bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9582:1..4627- (Discosporangium mesarthrocarpum MT17_79)
ATGATTGCCGACAAAAATAGGGAAACACTTGAAAAGCTAGCTCACCAGAA
TAGTATTGAACAGGTTCAAAATCATGTGGAAGAGATGGGATTGTCTGGTG
CTGTAAAAGGCATGGATCCATCCGATGGCACTCTTACGTATAAGCCCAAT
TCCATGGTGGCATGGAGAGAGAAGGAAACCTTGGAGAAGATGAAAAATAC
TGCCTTCCAACTTGCAAAGGAAAGATTCAATAGAGAGGAGGGCCTCCAAT
CCCTTAACTTATGTGGTTCCACCAACGTGGGTGATTCTGGAGTGGCAGCA
CTTGCCAAGCAGTGCAACACATTGAGGAATTTGAATCTGTCAGGGGCGTG
CCAGATCACAGACTTGTCCATATGGTCACTGGCAAAGAACTGCACATGCA
TAACCAGCTTGAACCTGGCGGGGTGCATTAGCATCTCTGGTGCAGGGCTG
GCTGTGTTGGGAGAATGCTGCCCGAACATTGCCCAGCTGAACCTTTCTGG
CTGCAAGCAGGTTGGCCACTGGGTGCTGACCAGAGTGTTCCGAGGATGCC
CCTCACTGGAAGTGATACTGCTTGACGATTGCCCTAAAGTTGGAGACCAA
GAGCTCAAGGAGCTTGCAGCTGGGTGCAAAGGGCTGACAAAGGCAGCCTT
GAAGAATTGCAAGCAGGTGTCTGATGCAGGCATATTGGAAGTGACAAGGA
GGTGCAACAATCTTCAATGGCTTGACCTTTCTCGTTCAGAGCTCACATTC
AAAGTTGGTGATGTCGCCATGTTGGCTTTGGGAGAGGGGTGCCCGGGACT
GCAGTGGCTGGATGTGAGTGGATGTGATGGTTTGACTGATGTTGGTCTGA
GCTGGATGACGATGGGTTGCCCAGCCCTCCTACATCTCAACATAGGAGGC
TGCATCAAGGTGTCAAATGCTGGTGTGACTAGTCTATCGGAAAATTGCCA
TGACCTCAAATATCTTGGTCTCAGGGGACTCAAATATGTCACGGACATGG
GAGTGGCACAG
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