mRNA_D-mesarthrocarpus_Contig958.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig958.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig958.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig958.3.1 vs. uniprot
Match: D7G8Y0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.960e-14
Identity = 86/272 (31.62%), Postives = 113/272 (41.54%), Query Frame = 2 
Query:  209 SRPGGSGKKSSGSGFKIIYSVSKLLSMGKAEQLRQTERGEKVKKGGNEENGTKVEKDLEEVKSEAEEAGVGEGAGKENKSGEADEDLAEGWQKYGYNKIIPLMPEEGSRMPAPNITEEVLATLNLRPGSARDFHAKHLKHLASLAEAGMGNGDAITGPRGGRGHLGMGVARGERGLDRGRGDRDRGLQGRFEG---------GDRDND--RSGGTAR----------------------------PGAVGPPRGPSRWDALRPERDRDRGYN 907
            +R G  GKK+SG+GFKI YSV++LLSMGK  +L ++E G                                                 EGW KY Y+ I PL+ E  +R+P+    +E  A L ++PGSARD H++H+  L +   A      ++ GPRGG          G+R       DRDRG                GDRD D  R G   +                            PG  G  R PSRWDAL+P+R+RDRGYN
Sbjct:    7 TRAGLGGKKASGTGFKITYSVNQLLSMGK--ELMESEAGCPP---------------------------------------------PEGWDKYEYDTIGPLIDENNTRIPS----KEEAAALKMKPGSARDLHSEHIAALVAKQGADPDQSPSL-GPRGG----------GDRP------DRDRGXXXXXXXXXXXXXXXWGDRDRDWDRFGDRNKXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGGAGGGRAPSRWDALKPDRERDRGYN 210
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig958.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y0_ECTSI4.960e-1431.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig958contigD-mesarthrocarpus_Contig958:20710..23766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size940
Hectar predicted targeting categoryother localisation
Exons4
Cds size747
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.4014525-UTR-D-mesarthrocarpus_Contig958:20709..209021680791112.4014525-UTR-D-mesarthrocarpus_Contig958:20709..20902Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig958 20710..20902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.4165425-CDS-D-mesarthrocarpus_Contig958:20902..212161680791112.4165425-CDS-D-mesarthrocarpus_Contig958:20902..21216Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig958 20903..21216 +
1680791112.4352033-CDS-D-mesarthrocarpus_Contig958:21983..222171680791112.4352033-CDS-D-mesarthrocarpus_Contig958:21983..22217Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig958 21984..22217 +
1680791112.4521499-CDS-D-mesarthrocarpus_Contig958:22822..228821680791112.4521499-CDS-D-mesarthrocarpus_Contig958:22822..22882Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig958 22823..22882 +
1680791112.4625163-CDS-D-mesarthrocarpus_Contig958:23627..237661680791112.4625163-CDS-D-mesarthrocarpus_Contig958:23627..23766Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig958 23628..23766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig958.3.1prot_D-mesarthrocarpus_Contig958.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig958 20903..23766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig958.3.1

>prot_D-mesarthrocarpus_Contig958.3.1 ID=prot_D-mesarthrocarpus_Contig958.3.1|Name=mRNA_D-mesarthrocarpus_Contig958.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=249bp
MRRTPSRPGGSGKKSSGSGFKIIYSVSKLLSMGKAEQLRQTERGEKVKKG
GNEENGTKVEKDLEEVKSEAEEAGVGEGAGKENKSGEADEDLAEGWQKYG
YNKIIPLMPEEGSRMPAPNITEEVLATLNLRPGSARDFHAKHLKHLASLA
EAGMGNGDAITGPRGGRGHLGMGVARGERGLDRGRGDRDRGLQGRFEGGD
RDNDRSGGTARPGAVGPPRGPSRWDALRPERDRDRGYNNRNIRERDVDG
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mRNA from alignment at D-mesarthrocarpus_Contig958:20710..23766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig958.3.1 ID=mRNA_D-mesarthrocarpus_Contig958.3.1|Name=mRNA_D-mesarthrocarpus_Contig958.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3057bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig958:20710..23766+ (Discosporangium mesarthrocarpum MT17_79)
CCTGGTTTCCCAGCTGGCGGAAAAGTAAGCAATAGGACATTGGACACCCT
TTTTTTCTGGTTTCCCAGGGGTGAAAATCAATTTTCCTCCACCGCAGTAC
ATAGACAGACAACATATAGTAGCATTATTAGTTAGTGGAAGAACATAAGG
GATACAAGGTATACCTTGAGGCGTAAAAGGTATACCTTGAGCAATGCGTC
GTACACCGTCCCGCCCCGGTGGGTCAGGCAAGAAGTCCTCCGGGTCTGGT
TTCAAGATAATTTACAGTGTGAGCAAACTACTGAGCATGGGAAAGGCAGA
GCAATTGAGGCAGACCGAGAGGGGAGAGAAGGTGAAAAAGGGGGGGAATG
AAGAGAATGGGACCAAGGTTGAGAAGGACCTCGAGGAGGTCAAGAGTGAG
GCTGAGGAAGCAGGAGTGGGGGAAGGTGCGGGGAAGGAGAATAAGAGCGG
AGAAGCAGATGAAGACTTGGCTGAGGGGTGGCAAAAGTATGGCTACAACA
AAATCATGTGAGTTTTTTGACTGTTTGTGGAGGAAGTGAAGGGTGAAGTG
ATCACTATAATTTATGCCACTTAAGATGATACTGCAGCATTCTAATATCA
GGCTTTACTGAGGAAGTACTGGAAACAAGGATTGCTCACATAGCTGTCAG
CAGTGACAGGTGTCGGTGAGGAAGGGGTTGGAGTGAAAGACAGACGTTGG
GTAGGAGGAGTGAATATGTCACTTTGTAATGTTTGCTGGTATGTTGGGGC
AGCTAATCCAATAAAGATGATGTGGGTGAATTTGAGGTACTGCAGCTGGG
AGTTAATGCATGTGTGGGACGGCAGCTGCTCATTCAGTAGTGTTATGTTT
TGGCGAGGGCAGTGCAATTTATCAATTGAGTGCATTAGTGCTGCCTTAGG
ACATTGCCCATGAAACTGTGAAGTATGTGCATCTGGTGCTAAATTGTCAT
TCACTGGGCATTTTTGCCTTCTTGTTTTCATGTTTGTTGGAGTTTGGGTT
GATACTCACATCTAAACCCAAGACGTTTTGAAATGCTTTCGCAGCAGCTT
GAAGGTGGTCAGTTACCACAACAACCACCCCCCTCCCCCTCAAAACATCT
CTTTGCAAATCAATCAGCCCAGTGGGTCCCTTTTTTCTTTTTCCTACCTT
TCCATTGGTCCTGATGCTGAGTCCCCAACCCCTCCAAGATGCATCTATAC
CTTCACCCTGCCAAGCCTGACTCCTCCCTGTCCCCAGCTTTTTTCCCTCC
TTACCTTTCCCTTCCACCTTCCAGACCCCTCATGCCAGAAGAAGGCTCTC
GTATGCCAGCCCCAAACATAACTGAGGAGGTCCTGGCCACCCTCAATCTA
CGACCTGGATCTGCTAGAGACTTCCATGCCAAGCACCTGAAACACCTTGC
ATCCTTGGCGGAGGCTGGCATGGGGAATGGAGACGCAATCACAGGCCCTC
GTGGGGGTCGGGGTCATTTAGGAATGGGGGTTGCTAGGGGAGAGAGAGGC
TTGGACAGGTTTGTGGGGGAGGGGGGTAGGTGCAGTTGGGTGTTTGTGCT
TGGAGTGGGTAATGGGATTTCTTGTTCGCTTTGCTTCTGATAGAGGTGTT
CCAGAGGGACTGTGTGCGTTATCATTGTGTCCTTAAATCAATGTGAGCCT
TGTGTATTATGTTTGGTAGCTGGCACTGGCTGGCTCCCAGGGGCTTATTT
TGGAGGGTGATCCTGTCCTACATCCTGCCAGTACTTGGCATGCTTGAAGG
CACTGTGTTTTACCCAGTGGTATGGGCTGCGGGATTTTTTGGATTTAGTC
CTTGGAGCTCTCCAATAGAGCTTGGTGACATGTCAATGTGTCGTGTTGCA
ATGGCATGTGTGGTGTCACCATGGTCTTTCCCCAGTGTGGTGTCGTTGAG
CTGTGACAAGACTTTGAGTTTGTAAACCCATGTTTTCGGGTCAGTAGCAC
TTAGGTACACGCCAAGTTCTGGGTTCACAGTGTTTTGATGTAACAAGAAA
AAGAAACTCTTGCCTGCCTGACTTGCCCTCTGACCACTTGCTTATGGGTG
TATCGCCCTTCTTTTTACCATTATTAAAGCACGCTGAAACCTGTTGCACA
TATTTTTATTCAGGGGAAGGGGAGACCGAGATCGAGGTCTTCAGGGGCGC
TTTGAAGGAGGGGACAGAGACAAGTGAGTGAAAGGGACCTCACCTCCAAT
GGGATGTAGCTCTAAAGTACTCCGGATAATTTGAAAGTTTGTTGTAGGAT
AAGGGTTATGGGGTGAGGGTAGGTGCCTCAAGAAAAGTGGGTCAATGAGA
GAGAGGTCTATTTGACAAGAGTGTCAGGAGGTATGAAAGACAGTGAAGTG
GTTACAGTAGAAATTAGGAGGGGTTTATTCAAAGGCATTTTCACCTGCTC
AGCTGTCAACTGTGCTTTTGTCTGCACTCTCTGCCCCCCCCCTCTACCCA
CTACTCAAGATGTATGAATTACAAGTTTCGTGTAAGCTAGAGTTTTATGC
TCTCTCACATCCTGAGCTAAGTTGTAACAGCTCCAGCACCTTGTGTGTTG
CGTACACACCACCCTCCTTACATTGTGTCATATCACTCTACTTGCAATTC
CTTCCCCTGCTTGATGCTTGGATTGTGCTTCCCTCCCCCAAACCCCATTT
TCCATTGGCACTCTTGTGTTGGTAATATTCTTCTGGTTATCTTGTTTTGG
TCATCTTGTATTGGTCATCTTGTATTGGTCATCTTGTTTTGATAATCTTA
TTTTGATAATCATGTTTTGATAGTCTTGTTTTGGTAATATTGTTTTGATA
ATCTTGTTTTGATAATCTTGTTTTGATAATATTGTTTTGATAATATTGTT
TTGGTAATCTTGTTTTGATAATCTTGTTCTGATTATCTTGTTTTGGTCAT
CAATTGTAATCTCATCAGTGACAGGTCAGGTGGGACGGCTCGGCCAGGGG
CTGTAGGCCCTCCGCGTGGGCCTTCTCGATGGGATGCACTCAGGCCTGAG
AGGGATAGGGACCGGGGCTACAACAATAGGAATATCCGGGAGAGGGATGT
GGATGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig958:20710..23766+

>mRNA_D-mesarthrocarpus_Contig958.3.1 ID=mRNA_D-mesarthrocarpus_Contig958.3.1|Name=mRNA_D-mesarthrocarpus_Contig958.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=747bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig958:20710..23766+ (Discosporangium mesarthrocarpum MT17_79)
ATGCGTCGTACACCGTCCCGCCCCGGTGGGTCAGGCAAGAAGTCCTCCGG
GTCTGGTTTCAAGATAATTTACAGTGTGAGCAAACTACTGAGCATGGGAA
AGGCAGAGCAATTGAGGCAGACCGAGAGGGGAGAGAAGGTGAAAAAGGGG
GGGAATGAAGAGAATGGGACCAAGGTTGAGAAGGACCTCGAGGAGGTCAA
GAGTGAGGCTGAGGAAGCAGGAGTGGGGGAAGGTGCGGGGAAGGAGAATA
AGAGCGGAGAAGCAGATGAAGACTTGGCTGAGGGGTGGCAAAAGTATGGC
TACAACAAAATCATACCCCTCATGCCAGAAGAAGGCTCTCGTATGCCAGC
CCCAAACATAACTGAGGAGGTCCTGGCCACCCTCAATCTACGACCTGGAT
CTGCTAGAGACTTCCATGCCAAGCACCTGAAACACCTTGCATCCTTGGCG
GAGGCTGGCATGGGGAATGGAGACGCAATCACAGGCCCTCGTGGGGGTCG
GGGTCATTTAGGAATGGGGGTTGCTAGGGGAGAGAGAGGCTTGGACAGGG
GAAGGGGAGACCGAGATCGAGGTCTTCAGGGGCGCTTTGAAGGAGGGGAC
AGAGACAATGACAGGTCAGGTGGGACGGCTCGGCCAGGGGCTGTAGGCCC
TCCGCGTGGGCCTTCTCGATGGGATGCACTCAGGCCTGAGAGGGATAGGG
ACCGGGGCTACAACAATAGGAATATCCGGGAGAGGGATGTGGATGGG
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