mRNA_D-mesarthrocarpus_Contig9578.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9578.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9578.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: D7FTX9_ECTSI (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX9_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.610e-22
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    4 LSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITV 207
            LSQ+KSKEGL E+YEKEF+K TMGV EDDP K LK ELK LF KL  KLD+LCNFHYTPK  IPE+ V
Sbjct:  389 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKV 456
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A835YNW6_9STRA (Mpp10 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.400e-19
Identity = 41/70 (58.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITVS 210
            E+S +KS EGLA +YEKE++K  +GVEEDDP+KDLK+EL+R F +L  KLD+LCNFH+ P+  +PE+ V+
Sbjct:   92 EVSMDKSTEGLAAVYEKEYLKQALGVEEDDPSKDLKEELRRDFARLCGKLDALCNFHFRPRAHLPEVAVA 161
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A6V1QZP6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QZP6_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 6.820e-19
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITV 207
            E+S EKSK GL E+YEKE++K  MGVE++DPNK  K+E+ ++F KL  KLDSL NFH+TPKP+IP++ V
Sbjct:  267 EVSTEKSKAGLGELYEKEYLKQVMGVEDEDPNKAEKEEMAKIFKKLCYKLDSLSNFHFTPKPVIPDLQV 335
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A7S2USH4_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.130e-17
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITV 207
            ELSQEKSK GL E+YEK++MK T+ +EE DP    K+E+ +LF KL+ KLDSL +FH+TPKP++PE  V
Sbjct:   31 ELSQEKSKLGLGEVYEKQYMKQTLQIEEADPRAKDKEEMTKLFRKLSYKLDSLTHFHFTPKPVMPESEV 99
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A2P4YHT8_9STRA (U3 small nucleolar ribonucleoprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHT8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.110e-16
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITV 207
            E+S EKSKEGL EIYEKE+MKT MG E DD +K  ++E++ +F  L  KLD+L N+H+TPKP + E+ V
Sbjct:   18 EVSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQV 86
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A1V9Z983_9STRA (U3 small nucleolar ribonucleoprotein protein MPP10 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z983_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.140e-16
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITVSFTA 219
            ELS EKSKEGL EIYEKE+MK  MG E++   K  ++E++ +F KL  KLD+L NFH+TPKP++ E+ V  TA
Sbjct:  391 ELSMEKSKEGLGEIYEKEYMKNAMGFEDNSDMKKEQEEIEAMFQKLCWKLDALSNFHFTPKPVVREMQVQSTA 463
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A662YH72_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH72_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.870e-16
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITV 207
            E+S EKSKEGL EIYEKE+MKT MG E DD +K  ++E++ +F  L  KLD+L N+H+TPKPI+ E+ V
Sbjct:  321 EVSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPIVKELQV 389
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A662XDN9_9STRA (U3 small nucleolar ribonucleoprotein protein MPP10 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDN9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.030e-16
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITV 207
            E+S EKSKEGL EIYEKE+MKT MG E DD +K  ++E++ +F  L  KLD+L N+H+TPKPI+ E+ V
Sbjct:  419 EVSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPIVKELQV 487
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A067C3X3_SAPPC (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C3X3_SAPPC)

HSP 1 Score: 79.7 bits (195), Expect = 9.580e-16
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITVSFTA 219
            +LS EKSKEGL EIYEKE+MK  MG E++   K  ++E++ +F KL  KLD+L NFH+TPKP++ E+ V  TA
Sbjct:  393 DLSMEKSKEGLGEIYEKEYMKNAMGFEDNSDMKKEQEEIEAMFQKLCWKLDALSNFHFTPKPVVREMAVQSTA 465
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Match: A0A6G0WWU4_9STRA (U3 small nucleolar ribonucleoprotein protein MPP10 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWU4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.310e-15
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKLDSLCNFHYTPKPIIPEITVSFTA 219
            ELS EKSKEGL EIYEKE+MKT MG E++   K  ++E+  +F KL  KLD+L NFH+TPKP++ E+ V   A
Sbjct:  387 ELSTEKSKEGLGEIYEKEYMKTAMGFEDNSEMKKEQEEIDAMFQKLCWKLDALTNFHFTPKPVVREMQVQSAA 459
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9578.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTX9_ECTSI1.610e-2273.53U3 small nucleolar ribonucleoprotein protein MPP10... [more]
A0A835YNW6_9STRA2.400e-1958.57Mpp10 protein-domain-containing protein n=1 Tax=Tr... [more]
A0A6V1QZP6_HETAK6.820e-1960.87Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2USH4_9STRA2.130e-1759.42Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A2P4YHT8_9STRA5.110e-1656.52U3 small nucleolar ribonucleoprotein (Fragment) n=... [more]
A0A1V9Z983_9STRA5.140e-1656.16U3 small nucleolar ribonucleoprotein protein MPP10... [more]
A0A662YH72_9STRA6.870e-1657.97Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662XDN9_9STRA7.030e-1657.97U3 small nucleolar ribonucleoprotein protein MPP10... [more]
A0A067C3X3_SAPPC9.580e-1654.79U3 small nucleolar ribonucleoprotein protein MPP10... [more]
A0A6G0WWU4_9STRA1.310e-1556.16U3 small nucleolar ribonucleoprotein protein MPP10... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9578contigD-mesarthrocarpus_Contig9578:373..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTX9
Preferred nameMPHOSPH10
PFAMsMpp10
Model size219
Max annot lvl2759|Eukaryota
KEGG koko:K14559
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010563,GO:0010921,GO:0010923,GO:0016070,GO:0016072,GO:0019220,GO:0019222,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0035303,GO:0035305,GO:0042254,GO:0042274,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0120114,GO:1901360,GO:1990904
Exons2
Evalue2.64e-23
EggNOG OGsCOG5384@1|root,KOG2600@2759|Eukaryota
Descriptionmaturation of SSU-rRNA
Cds size219
COG categoryJ
BRITEko00000,ko00001,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.1749713-CDS-D-mesarthrocarpus_Contig9578:372..5371680791112.1749713-CDS-D-mesarthrocarpus_Contig9578:372..537Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9578 373..537 -
1680791112.1924467-CDS-D-mesarthrocarpus_Contig9578:1481..15351680791112.1924467-CDS-D-mesarthrocarpus_Contig9578:1481..1535Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9578 1482..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9578.1.1prot_D-mesarthrocarpus_Contig9578.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9578 373..1535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9578.1.1

>prot_D-mesarthrocarpus_Contig9578.1.1 ID=prot_D-mesarthrocarpus_Contig9578.1.1|Name=mRNA_D-mesarthrocarpus_Contig9578.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=73bp
ELSQEKSKEGLAEIYEKEFMKTTMGVEEDDPNKDLKKELKRLFVKLNRKL
DSLCNFHYTPKPIIPEITVSFTA
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9578:373..1535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9578.1.1 ID=mRNA_D-mesarthrocarpus_Contig9578.1.1|Name=mRNA_D-mesarthrocarpus_Contig9578.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1163bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9578:373..1535- (Discosporangium mesarthrocarpum MT17_79)
GAGCTGTCACAGGAAAAGAGCAAGGAGGGTCTAGCTGAGATATACGAAAA
GGAGGTAATGCTGCAATTTTGATGTTGATGTTGATGTTGCAGGTTTGTTT
TGATTTTGAACTATGTCATACGTATAACATACTTCAAAGTATGTTATTGT
CACTGAGAATTTTTCAAGCAGAGCCCTGTGAAAATGTTCCTGAAGTGTGT
CATCTTGAAGCCTGATTTGAAGGTGCAAGGACAGGGTGTAAATGTGGGGT
CAAAATAATCAGGTGTAGATTACCTTGTTTTTGTGCTTCTGCCTCCCATG
CCCCAACCCTTCTCCAATATGAACCACAAAAGATCCTTTACTGTTTCAAG
CTACATATAGTCATACCCACAAATCAAAATGTGCATAATGTCGTTCTCTC
CCTTTCACTCTTCATACATCTGTGCAACGGCCTTCAGGGAGAGGGTATTT
CTAGACCTTATCCTTGTCAATGATTTGGTGTTTATTAGCTTCAATGTTTG
AAACATGACGGTTGGGAAAATCACAGATTTTGTGGGTTTTCCCTCACCCT
TGTATACCCGTCTACCCCAAACCAACTTCCACTCATCCGCCATGAAGCTC
CTTTGTGATGATCGCTGAACACCCCTGAGAGGATGCCTTAACCCTAACGC
TAACCCTGAGCTCTTGCCCTGAGCACTGTCTTTTAATGACTGATGAAATG
ACTGGTGAGGGTACCGGGAGAAAAGGGGAAGGGGAGAGTTTAAGTGGGAG
ATGGGAAACAACCATCAAACCCCTTGGAACAGAGACATTGAACAGAGACA
TGATTCTATTGTACACTCTACCCCTGACCACCTTGTAGTTGATTTTGTTT
CCCCGAACTCCTCCGCTCAAGACCAATGAGCTGGGCTGTACCTCATGTGC
CTTAGAAGTGTTTACAGCTGACTGGTGATCAATGCCTGTGTGCAACCACC
ATCAACACATATTGATATCAATGTTCTTACATAATGAAATCACCGCAGTT
CATGAAAACCACGATGGGGGTTGAGGAGGACGACCCGAACAAGGACTTGA
AGAAAGAGCTGAAGAGGCTGTTCGTGAAGCTCAACAGAAAACTCGATTCG
CTCTGCAACTTCCACTACACACCAAAGCCAATCATTCCAGAGATAACGGT
TAGTTTTACAGCA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9578:373..1535-

>mRNA_D-mesarthrocarpus_Contig9578.1.1 ID=mRNA_D-mesarthrocarpus_Contig9578.1.1|Name=mRNA_D-mesarthrocarpus_Contig9578.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9578:373..1535- (Discosporangium mesarthrocarpum MT17_79)
GAGCTGTCACAGGAAAAGAGCAAGGAGGGTCTAGCTGAGATATACGAAAA
GGAGTTCATGAAAACCACGATGGGGGTTGAGGAGGACGACCCGAACAAGG
ACTTGAAGAAAGAGCTGAAGAGGCTGTTCGTGAAGCTCAACAGAAAACTC
GATTCGCTCTGCAACTTCCACTACACACCAAAGCCAATCATTCCAGAGAT
AACGGTTAGTTTTACAGCA
back to top