mRNA_D-mesarthrocarpus_Contig9577.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9577.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9577.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9577.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9577contigD-mesarthrocarpus_Contig9577:3247..4670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1424
Hectar predicted targeting categoryother localisation
Exons1
Cds size1209
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.1060472-UTR-D-mesarthrocarpus_Contig9577:3246..33001680791112.1060472-UTR-D-mesarthrocarpus_Contig9577:3246..3300Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9577 3247..3300 +
1680791112.1403604-UTR-D-mesarthrocarpus_Contig9577:4509..46701680791112.1403604-UTR-D-mesarthrocarpus_Contig9577:4509..4670Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9577 4510..4670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.127321-CDS-D-mesarthrocarpus_Contig9577:3300..45091680791112.127321-CDS-D-mesarthrocarpus_Contig9577:3300..4509Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9577 3301..4509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9577.2.1prot_D-mesarthrocarpus_Contig9577.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9577 3301..4509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9577.2.1

>prot_D-mesarthrocarpus_Contig9577.2.1 ID=prot_D-mesarthrocarpus_Contig9577.2.1|Name=mRNA_D-mesarthrocarpus_Contig9577.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=403bp
MGGRGPGGVREESMGSTQGWEGLPASGSVSSIKWTPTSQAELVDMGRRGG
KREPHQSPPGQMACSWQGNRSHSPSSPPSSVYKERMGMARVRVEGWGDSK
VGICRRGGTSSGNNAVSGKNCDTCAASGEVRDSTQGGEGSDDLCVRLPSI
RSIKNLSGPEPTQNSPSSSNTLPSIFNRPPLRGIGATPHHRSANMGGGGT
VGPGPGPGSRMGKALHTPPQEAGVKPSAWGKTPPAAAPIYMGARGMESRC
QGGNEPGFYPLPPLSPRELYASASLEPTHSLPPQSQGGQEERRGGRETLE
RALQGRLVDGEHSKSGQAGDGGGYEPHWMEGQRGAGLEPGPGPGGAHAPV
LRGGACFPPRFPMGVSSPYSYPRAHGHGGWYHGMHAMSSQAGRGEGALGE
GS*
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mRNA from alignment at D-mesarthrocarpus_Contig9577:3247..4670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9577.2.1 ID=mRNA_D-mesarthrocarpus_Contig9577.2.1|Name=mRNA_D-mesarthrocarpus_Contig9577.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1424bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9577:3247..4670+ (Discosporangium mesarthrocarpum MT17_79)
GGGAGGCACACGTACCCCTTGGGCCGGGGGGGACATCTGGGGGGTCCACT
AGGGATGGGGGGCAGGGGACCAGGTGGGGTAAGGGAGGAGAGCATGGGCT
CTACTCAGGGTTGGGAGGGCTTGCCAGCGTCAGGATCAGTCTCCTCCATC
AAATGGACCCCTACTTCCCAAGCTGAGCTGGTGGACATGGGGAGAAGGGG
AGGGAAGAGGGAGCCGCATCAGTCGCCTCCAGGACAGATGGCTTGTTCCT
GGCAGGGGAACAGGTCACACTCCCCCTCCTCCCCACCATCATCTGTCTAC
AAGGAGCGCATGGGGATGGCGCGGGTGAGGGTAGAGGGGTGGGGAGACAG
CAAGGTAGGCATCTGCCGCAGAGGTGGCACATCCAGCGGGAATAACGCTG
TGTCTGGCAAGAACTGCGATACCTGCGCAGCCAGTGGTGAGGTCAGGGAC
AGCACTCAGGGTGGGGAGGGATCTGATGACCTTTGTGTCCGCCTCCCTTC
TATCCGAAGTATTAAGAACCTGAGCGGACCTGAACCCACTCAAAACAGCC
CATCCTCCTCCAACACTCTCCCATCCATCTTCAACCGTCCGCCTCTGAGA
GGGATAGGCGCCACCCCCCACCACAGGAGTGCCAACATGGGGGGGGGGGG
AACAGTGGGGCCCGGACCAGGGCCAGGGTCAAGGATGGGGAAGGCTTTGC
ACACACCGCCTCAGGAAGCAGGCGTCAAACCCTCGGCATGGGGGAAAACT
CCGCCTGCTGCTGCCCCCATATATATGGGGGCCAGGGGTATGGAATCGAG
GTGTCAAGGGGGAAATGAGCCAGGCTTCTACCCCCTTCCCCCTTTGTCAC
CCAGGGAGTTGTACGCAAGTGCCAGCTTGGAGCCAACACATTCCCTGCCC
CCCCAATCCCAGGGTGGGCAGGAAGAGAGGAGAGGTGGCAGAGAGACCTT
GGAAAGGGCTCTACAGGGCAGGCTTGTGGATGGGGAACACAGTAAGAGTG
GACAGGCAGGGGATGGAGGGGGTTATGAGCCTCATTGGATGGAAGGACAA
AGGGGTGCAGGGCTGGAGCCGGGGCCAGGGCCTGGGGGGGCGCATGCCCC
GGTCCTCCGGGGTGGAGCATGTTTTCCTCCCCGTTTCCCTATGGGTGTAT
CCAGCCCATATTCTTACCCACGAGCTCATGGACATGGGGGCTGGTACCAT
GGTATGCATGCGATGTCTTCACAGGCAGGCAGGGGAGAAGGGGCGCTGGG
GGAAGGCTCCTGAACGCAAGACAAGGGGTGGTAGGTTGAGGGACAGTTTC
AACATGGAGATTGCTCAGACATTGTGTAGATGTTGTGGGGCACACACACA
CACACACACACACACATGGCACTTCTTATGTTGTGTGGGTGTGTACAAGC
AAGCCAGGAATAGAGCTCTTGCGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9577:3247..4670+

>mRNA_D-mesarthrocarpus_Contig9577.2.1 ID=mRNA_D-mesarthrocarpus_Contig9577.2.1|Name=mRNA_D-mesarthrocarpus_Contig9577.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1209bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9577:3247..4670+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGGCAGGGGACCAGGTGGGGTAAGGGAGGAGAGCATGGGCTCTAC
TCAGGGTTGGGAGGGCTTGCCAGCGTCAGGATCAGTCTCCTCCATCAAAT
GGACCCCTACTTCCCAAGCTGAGCTGGTGGACATGGGGAGAAGGGGAGGG
AAGAGGGAGCCGCATCAGTCGCCTCCAGGACAGATGGCTTGTTCCTGGCA
GGGGAACAGGTCACACTCCCCCTCCTCCCCACCATCATCTGTCTACAAGG
AGCGCATGGGGATGGCGCGGGTGAGGGTAGAGGGGTGGGGAGACAGCAAG
GTAGGCATCTGCCGCAGAGGTGGCACATCCAGCGGGAATAACGCTGTGTC
TGGCAAGAACTGCGATACCTGCGCAGCCAGTGGTGAGGTCAGGGACAGCA
CTCAGGGTGGGGAGGGATCTGATGACCTTTGTGTCCGCCTCCCTTCTATC
CGAAGTATTAAGAACCTGAGCGGACCTGAACCCACTCAAAACAGCCCATC
CTCCTCCAACACTCTCCCATCCATCTTCAACCGTCCGCCTCTGAGAGGGA
TAGGCGCCACCCCCCACCACAGGAGTGCCAACATGGGGGGGGGGGGAACA
GTGGGGCCCGGACCAGGGCCAGGGTCAAGGATGGGGAAGGCTTTGCACAC
ACCGCCTCAGGAAGCAGGCGTCAAACCCTCGGCATGGGGGAAAACTCCGC
CTGCTGCTGCCCCCATATATATGGGGGCCAGGGGTATGGAATCGAGGTGT
CAAGGGGGAAATGAGCCAGGCTTCTACCCCCTTCCCCCTTTGTCACCCAG
GGAGTTGTACGCAAGTGCCAGCTTGGAGCCAACACATTCCCTGCCCCCCC
AATCCCAGGGTGGGCAGGAAGAGAGGAGAGGTGGCAGAGAGACCTTGGAA
AGGGCTCTACAGGGCAGGCTTGTGGATGGGGAACACAGTAAGAGTGGACA
GGCAGGGGATGGAGGGGGTTATGAGCCTCATTGGATGGAAGGACAAAGGG
GTGCAGGGCTGGAGCCGGGGCCAGGGCCTGGGGGGGCGCATGCCCCGGTC
CTCCGGGGTGGAGCATGTTTTCCTCCCCGTTTCCCTATGGGTGTATCCAG
CCCATATTCTTACCCACGAGCTCATGGACATGGGGGCTGGTACCATGGTA
TGCATGCGATGTCTTCACAGGCAGGCAGGGGAGAAGGGGCGCTGGGGGAA
GGCTCCTGA
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