mRNA_D-mesarthrocarpus_Contig9576.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9576.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9576.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9576.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9576contigD-mesarthrocarpus_Contig9576:736..3078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size565
Hectar predicted targeting categoryother localisation
Exons4
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.0193222-UTR-D-mesarthrocarpus_Contig9576:735..7571680791112.0193222-UTR-D-mesarthrocarpus_Contig9576:735..757Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9576 736..757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791112.031229-CDS-D-mesarthrocarpus_Contig9576:757..8231680791112.031229-CDS-D-mesarthrocarpus_Contig9576:757..823Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9576 758..823 +
1680791112.0423434-CDS-D-mesarthrocarpus_Contig9576:1271..14961680791112.0423434-CDS-D-mesarthrocarpus_Contig9576:1271..1496Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9576 1272..1496 +
1680791112.052999-CDS-D-mesarthrocarpus_Contig9576:2141..22631680791112.052999-CDS-D-mesarthrocarpus_Contig9576:2141..2263Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9576 2142..2263 +
1680791112.069278-CDS-D-mesarthrocarpus_Contig9576:2948..30781680791112.069278-CDS-D-mesarthrocarpus_Contig9576:2948..3078Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9576 2949..3078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9576.1.1prot_D-mesarthrocarpus_Contig9576.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9576 758..3078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9576.1.1

>prot_D-mesarthrocarpus_Contig9576.1.1 ID=prot_D-mesarthrocarpus_Contig9576.1.1|Name=mRNA_D-mesarthrocarpus_Contig9576.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=181bp
MSPTRRRRLMVDSDDDAAGNSKTGAAGIRGKSEPDSRDVSNSAMKRRKIL
VDADEEGDEAPAPRVAAGTPVDDEEAAIELRRRRQLAERWSKLNEDSDCE
EAYTSEGPDLPHVNHPKTFTQLQLGSAWVKALGRTGGRSIAQEHHSGEEC
ENHEDLPYFIPKSDGDDSPGAGERTARGRGG
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mRNA from alignment at D-mesarthrocarpus_Contig9576:736..3078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9576.1.1 ID=mRNA_D-mesarthrocarpus_Contig9576.1.1|Name=mRNA_D-mesarthrocarpus_Contig9576.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2343bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9576:736..3078+ (Discosporangium mesarthrocarpum MT17_79)
CTTTCTTCAATCGTAGCCGACCATGTCCCCAACGAGGAGGAGACGTTTGA
TGGTGGATTCGGACGATGATGCCGCCGGTAATTCCAAGGTGCGCCTTTGG
CGAAACTACTTTGGCGCATGCCTACTCTCACCTTTTGAAGGCTCCTGAGT
GGTGTCCGACTTCGTGATCCCATTGCTTGGTCCAAGGAACGATCTTGCGA
TGACTATGGTGTCATCACATGGAGCCCATCTAGGGGAAAATATCTATTTT
TTGCCAATTCCCTTGTAGTTAAAAAAACGGTCCTGCCAACTGACCTCACG
GGTGCCTCCCACCACATCAGAGAACTAGTTCTCTCATCTCACCTTTGAAT
TTTCCTGGAGTAAACTGGTTGGATGACGATGGTTTTCACTCTCAATTTTT
TGGGGAGGGTAACCTCTGTGGCCAATGCACCAGTCATAGACCAGTTTTGG
CTTAGATCTCAACCGTGCGCTACTTTCGTTGTCTATGCTGCGGCGCGTTG
ACATTCAAATATATGCACCCCCCACTCTGTACGTAGACCGGAGCAGCTGG
CATCAGGGGGAAGAGTGAACCAGACTCGCGGGATGTGTCAAACTCCGCCA
TGAAGCGCCGAAAAATCCTGGTAGACGCGGACGAGGAGGGGGACGAAGCC
CCAGCTCCCCGGGTTGCAGCAGGGACGCCCGTGGACGATGAAGAGGCTGC
CATCGAGCTGCGACGGAGAAGGCAGCTGGCAGAGAGATGGTCAAAGCTCA
ATGAAGACTCGGTGAGGGACGTGTTGAAGGCAGTGCAACCATGTAATGGG
CAGGCCAGAGAATCAAAGGTGCTGACCCGTGCGCCCGGCACCCGCACCCT
TGTCTCTTTCGCTCTTTTTCCCCCGCCTTATCCGCCCAATCTCTACCCTG
TCCCTTCCCCACACTCCCTGGAAGAAAAAGCCTAGGCCAAAGGGAAGCCC
TGAGAAAATGGTATCTTCAACCACCAGTGTGGCCCTTCTGACCGTTTTTA
TTTATCAACCTCCATTTCCCACGTGCTCCTTCAACCGATGCCCAATTCTA
ACCTCTCCCAAGGCTTCTTTGTTTCACTTTCTTATTTTTGCTTTTTCTTG
ATAAGTGGTGTTGTTCGAATGCTCTTTTTTCTAGTTCTTTTTCCCTTGTT
CTTTTTTTCTTTTTTCCCTTTTTCCCTCACCCTCTGACCATGGTTTTGCT
ACGAACTAACCACAGCTCCACTGTGTGATAAATATACACCTGTGTAAGAG
GCTCCGAGGCATCGCTGTCACTCAAACCCACCGATCGGATGCGAAACACC
GTATAAAAAAGTATCTTTCGAGTAGCCCTGCCTCCGATATGTTTCTGATG
TCAACGCAAAAAAAATCCTCCTCAAGCCCCCCCTGTCTTCCTCCCCTCCT
GTGCAGGACTGTGAAGAAGCTTATACAAGCGAAGGACCTGACCTCCCCCA
CGTTAACCACCCCAAGACCTTTACGCAGCTCCAACTGGGCTCCGCGTGGG
TGAAGGCCCTGGGGAGGACAGGGGGCAGGTGTGCACTTCAGCGCGTCAGC
CTAGGCAAAATCAATGCATTGAGAAGACCAGAGCAGCCCAGAGAGAACTG
GGTGGCCCTGCGCAACCACGTAGTTGCCCTCAGCATCCCTTTCGAACAAC
ACAGGCGGTGCCCTACGGTTTATGCCGTGCATTTTCCATCGTTACCTTAG
ATTTTAGGGTTAGGGCCTTCCCTGTGTCCGCTGCAAATTTGGATACTGAT
GCTCGAGCCTACCCTACTGCAGCCACCTTGATCATTGCTGTCCATGCTGT
TATGAAGGTTATGCACGGTGGTTCTTTAGCTTCTAGTACTCACAGGGCCA
TGCAAATCTCGCTTCCCCACCGTGATTTCTCTTGCTGACACACCCCCCCA
CATGCAACAGTTACAAGTTGTAAGGCACCTTAGCCCCATCCTTGGGGGGG
GTCAACTCACCCTTCTCCCCTCCCCCTCCCCCGCCCTCCATGAAGAGGCC
CCTTCAACGGGTGTTCTGCGCTGTGCTGGGCTAGACTTTTGTTCCCCCCG
AGGTGGGGGCCTCACCCCTCTCTCACCCGTACACTCATGGACATTGTCTC
TACGGGCCCTGTAAGTGCTCCTGTCCCAATGGTCTGCCGTGACATTACTC
ATTTCACTGTTCTCAGCGCGGTGTCTGTTGCCTTCACACACACCCTCCCT
TTCCTCATGAAAGATCCATCGCCCAGGAGCACCACTCGGGTGAAGAGTGC
GAGAACCACGAGGATCTTCCTTACTTTATCCCAAAGTCTGACGGAGATGA
CAGCCCTGGAGCAGGGGAGAGGACAGCCAGGGGCAGGGGCGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9576:736..3078+

>mRNA_D-mesarthrocarpus_Contig9576.1.1 ID=mRNA_D-mesarthrocarpus_Contig9576.1.1|Name=mRNA_D-mesarthrocarpus_Contig9576.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=543bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9576:736..3078+ (Discosporangium mesarthrocarpum MT17_79)
ATGTCCCCAACGAGGAGGAGACGTTTGATGGTGGATTCGGACGATGATGC
CGCCGGTAATTCCAAGACCGGAGCAGCTGGCATCAGGGGGAAGAGTGAAC
CAGACTCGCGGGATGTGTCAAACTCCGCCATGAAGCGCCGAAAAATCCTG
GTAGACGCGGACGAGGAGGGGGACGAAGCCCCAGCTCCCCGGGTTGCAGC
AGGGACGCCCGTGGACGATGAAGAGGCTGCCATCGAGCTGCGACGGAGAA
GGCAGCTGGCAGAGAGATGGTCAAAGCTCAATGAAGACTCGGACTGTGAA
GAAGCTTATACAAGCGAAGGACCTGACCTCCCCCACGTTAACCACCCCAA
GACCTTTACGCAGCTCCAACTGGGCTCCGCGTGGGTGAAGGCCCTGGGGA
GGACAGGGGGCAGATCCATCGCCCAGGAGCACCACTCGGGTGAAGAGTGC
GAGAACCACGAGGATCTTCCTTACTTTATCCCAAAGTCTGACGGAGATGA
CAGCCCTGGAGCAGGGGAGAGGACAGCCAGGGGCAGGGGCGGG
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