mRNA_D-mesarthrocarpus_Contig9571.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9571.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9571.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: D8LJ53_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ53_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.280e-19
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHPGVVLEILK+CVEGD + A+R+M  L++TGYSSNDIIGTVFRV
Sbjct:  227 KVCDQPHPGVVLEILKSCVEGDCAKASRRMKALYDTGYSSNDIIGTVFRV 276
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: A0A835YM50_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM50_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.290e-14
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHPGVVL IL+ACV GD+  A  +M  L++TGYSSNDII TVF+V
Sbjct:  236 KVCDQPHPGVVLAILQACVAGDMRNAHLKMKALYDTGYSSNDIIATVFKV 285
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: A0A7S2K8F5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8F5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.860e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHP VV  I+ AC++G+ ++A  QM  L  TGYS NDIIGT+F+V
Sbjct:  165 KVCDQPHPTVVRGIISACIKGETAVAVDQMKALWGTGYSCNDIIGTLFKV 214
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: H3G8B8_PHYRM (AAA domain-containing protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=H3G8B8_PHYRM)

HSP 1 Score: 64.7 bits (156), Expect = 6.980e-11
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHP VV EIL  C +G++  A +Q  +L ++GYSS DIIGTVFRV
Sbjct:  224 KVCDQPHPAVVREILNQCAKGELDGAEKQAVELWKSGYSSLDIIGTVFRV 273
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: W2PNZ0_PHYPN (AAA domain-containing protein n=10 Tax=Peronosporaceae TaxID=4777 RepID=W2PNZ0_PHYPN)

HSP 1 Score: 63.9 bits (154), Expect = 1.320e-10
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHP VV EIL  C +G++  A +Q  +L ++GYSS DIIGT+FRV
Sbjct:  224 KVCDQPHPAVVREILNHCAKGELDGAEKQAVELWKSGYSSLDIIGTIFRV 273
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: B7GAD9_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAD9_PHATC)

HSP 1 Score: 63.2 bits (152), Expect = 2.660e-10
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHP  V +I+  C +GD   A  QM  L ++GYS+NDIIGTVF+V
Sbjct:  250 KVCDQPHPKTVGQIISHCTKGDTKAACDQMQALWKSGYSTNDIIGTVFKV 299
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: A0A8K1CDT3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDT3_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 3.440e-10
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHP  V  I+  CV+G +  A +++  L +TGYS+ DIIGTVFRV
Sbjct:  224 KVCDQPHPNAVRSIIAHCVQGKIDPAEKELISLWKTGYSTQDIIGTVFRV 273
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: A0A4P9YSI9_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YSI9_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 4.690e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHP VV  IL +C +GD+ +A R +S L + GYSS DI+ T+FRV
Sbjct:  221 KVCDQPHPAVVSRILLSCQQGDIDVAVRGVSDLWDQGYSSIDIVTTLFRV 270
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: A0A2D4C0G1_PYTIN (Replication factor C subunit 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0G1_PYTIN)

HSP 1 Score: 61.6 bits (148), Expect = 8.960e-10
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHP  V  I+  C +GD+  A +++  L +TGYS+ DIIGTVFRV
Sbjct:  224 KVCDQPHPTAVRSIIGHCTKGDIDGAEKELIALWKTGYSTQDIIGTVFRV 273
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BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Match: A0A8H5MC58_9AGAR (AAA domain-containing protein n=1 Tax=Gymnopus confluens TaxID=206315 RepID=A0A8H5MC58_9AGAR)

HSP 1 Score: 61.6 bits (148), Expect = 9.340e-10
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   13 QVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGTVFRV 162
            +VCDQPHP VV E++K+CV+G V +A  ++++L E GYS+ DI  T+FRV
Sbjct:  237 KVCDQPHPIVVQEMIKSCVDGKVDVAMEKLNELWENGYSAIDIAVTIFRV 286
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9571.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ53_ECTSI6.280e-1978.00AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YM50_9STRA3.290e-1468.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2K8F5_9STRA1.860e-1158.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
H3G8B8_PHYRM6.980e-1160.00AAA domain-containing protein n=16 Tax=Peronospora... [more]
W2PNZ0_PHYPN1.320e-1058.00AAA domain-containing protein n=10 Tax=Peronospora... [more]
B7GAD9_PHATC2.660e-1056.00Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A8K1CDT3_PYTOL3.440e-1054.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4P9YSI9_9FUNG4.690e-1056.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A2D4C0G1_PYTIN8.960e-1054.00Replication factor C subunit 2 n=1 Tax=Pythium ins... [more]
A0A8H5MC58_9AGAR9.340e-1054.00AAA domain-containing protein n=1 Tax=Gymnopus con... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9571contigD-mesarthrocarpus_Contig9571:642..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LJ53
Preferred nameRFC2
PFAMsAAA,DNA_pol3_delta2,Rep_fac_C,RuvB_N
Model size162
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00064
KEGG koko:K00620,ko:K10755
KEGG ReactionR00259,R02282
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,ko03030,ko03420,ko03430,map00220,map01100,map01110,map01130,map01210,map01230,map03030,map03420,map03430
KEGG ModuleM00028,M00289,M00295
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019985,GO:0022402,GO:0022616,GO:0030554,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045786,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0097367,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
Exons1
Evalue1.03e-19
EggNOG OGsCOG0470@1|root,KOG0991@2759|Eukaryota
Ec32 ortholog descriptionReplication factor C similar to EsV-1-87
Ec32 orthologEc-02_004800.1
EC2.3.1.1,2.3.1.35
DescriptionDNA replication
Cds size162
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791111.798041-CDS-D-mesarthrocarpus_Contig9571:641..8031680791111.798041-CDS-D-mesarthrocarpus_Contig9571:641..803Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9571 642..803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9571.1.1prot_D-mesarthrocarpus_Contig9571.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9571 642..803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9571.1.1

>prot_D-mesarthrocarpus_Contig9571.1.1 ID=prot_D-mesarthrocarpus_Contig9571.1.1|Name=mRNA_D-mesarthrocarpus_Contig9571.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=54bp
MGEKQVCDQPHPGVVLEILKACVEGDVSMATRQMSKLHETGYSSNDIIGT
VFRV
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mRNA from alignment at D-mesarthrocarpus_Contig9571:642..803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9571.1.1 ID=mRNA_D-mesarthrocarpus_Contig9571.1.1|Name=mRNA_D-mesarthrocarpus_Contig9571.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=162bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9571:642..803+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGAAAAACAGGTTTGTGACCAGCCGCACCCGGGGGTGGTCCTGGA
AATCCTGAAGGCGTGTGTGGAGGGGGATGTGTCCATGGCAACGAGGCAGA
TGAGCAAGCTGCACGAGACAGGATACTCCTCCAACGATATTATTGGGACT
GTGTTCCGGGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9571:642..803+

>mRNA_D-mesarthrocarpus_Contig9571.1.1 ID=mRNA_D-mesarthrocarpus_Contig9571.1.1|Name=mRNA_D-mesarthrocarpus_Contig9571.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=162bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9571:642..803+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGAAAAACAGGTTTGTGACCAGCCGCACCCGGGGGTGGTCCTGGA
AATCCTGAAGGCGTGTGTGGAGGGGGATGTGTCCATGGCAACGAGGCAGA
TGAGCAAGCTGCACGAGACAGGATACTCCTCCAACGATATTATTGGGACT
GTGTTCCGGGTG
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