mRNA_D-mesarthrocarpus_Contig9569.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9569.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9569.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9569.2.1 vs. uniprot
Match: A0A6H5JLL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 6.500e-27
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 2 
Query:  599 ESTGSAYDGLRVAVVIPYIGGQLPAWFDSFAELAAASSDFVDWIIFCAEDLANISTPPNVVMVPMSPTELAWQLSGIVYPPDADQKPEMY 868
            E   + Y  +RVAV+IPY G  LP WFD+F +LAA + D VDW+IFC EDLA + TPPNV M+  SP ELAW L+G+VYP DAD++P++Y
Sbjct:  150 EDEDNGYGDMRVAVLIPYSGPGLPTWFDAFTDLAALNKDLVDWLIFCEEDLAQVKTPPNVRMMSTSPAELAWMLAGVVYPADADERPDVY 239
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BLAST of mRNA_D-mesarthrocarpus_Contig9569.2.1 vs. uniprot
Match: D7G2Z3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z3_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-14
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 2 
Query:  578 GIQKEFEESTGSAYDGLRVAVVIPYIGGQLPAWFDSFAELAAASSDFVDWIIFCAEDLANISTPPNVVMVPMSPTELAWQLSGIVYPPD 844
            G Q   + +    ++G +VAVV+PY+G  LP W+D FAE A  +   VDWIIFC + L    +PPN+   PM+   +AW L+G+V P D
Sbjct:  232 GAQAPPQPTEPDQFNGQKVAVVVPYVGKDLPVWWDVFAEQARLNDGLVDWIIFCDQKLVRKRSPPNIKFFPMTTRRMAWLLAGVVEPGD 320
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BLAST of mRNA_D-mesarthrocarpus_Contig9569.2.1 vs. uniprot
Match: A0A6H5L1U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-12
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 2 
Query:  617 YDGLRVAVVIPYIGGQLPAWFDSFAELAAASSDFVDWIIFCAE-----------DLANISTPPNVVMVPMSPTELAWQLSGIVYPPD 844
            ++G +VAVVIPY+G  LP W+D+FAE A  +   VDWIIFC +            L    +PPN+   PM+   +AW L+G+V P D
Sbjct:  238 FNGQKVAVVIPYVGKDLPVWWDAFAEQARLNDGLVDWIIFCDQAKLAPTVALSLKLVRKQSPPNIKFFPMTTRRMAWLLAGVVEPED 324
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BLAST of mRNA_D-mesarthrocarpus_Contig9569.2.1 vs. uniprot
Match: A0A835Z713_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z713_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.810e-9
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2 
Query:  542 AARESVGIPVESGIQKEFEESTGSAYDGL--RVAVVIPYIGGQLPAWFDSFAELAAASSDFVDWIIFCAEDLANISTPPNV 778
            AA+E  G   +  +  +  ++ G+   G   RVA+V+PY+G  LPAWFD FA  A AS+  +DW+I C   LA+I+TPP+V
Sbjct:  126 AAKEGEGGGEDLALTLDMVKAMGAPAAGQQHRVAMVMPYVGDALPAWFDLFALTADASAALLDWLILCPPHLAHIATPPSV 206
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9569.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JLL1_9PHAE6.500e-2757.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2Z3_ECTSI1.010e-1442.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1U3_9PHAE1.540e-1242.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z713_9STRA3.810e-943.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9569contigD-mesarthrocarpus_Contig9569:2326..4353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G2Z3
Model size928
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.52e-16
EggNOG OGs2BMGJ@1|root,2S1KX@2759|Eukaryota
Cds size672
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791111.3577242-UTR-D-mesarthrocarpus_Contig9569:2325..25811680791111.3577242-UTR-D-mesarthrocarpus_Contig9569:2325..2581Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9569 2326..2581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791111.369267-CDS-D-mesarthrocarpus_Contig9569:2581..30701680791111.369267-CDS-D-mesarthrocarpus_Contig9569:2581..3070Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9569 2582..3070 +
1680791111.3802328-CDS-D-mesarthrocarpus_Contig9569:4170..43531680791111.3802328-CDS-D-mesarthrocarpus_Contig9569:4170..4353Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9569 4171..4353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9569.2.1prot_D-mesarthrocarpus_Contig9569.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9569 2582..4353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9569.2.1

>prot_D-mesarthrocarpus_Contig9569.2.1 ID=prot_D-mesarthrocarpus_Contig9569.2.1|Name=mRNA_D-mesarthrocarpus_Contig9569.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=224bp
MTRFRIKSATISRASPPKLVVLLLLLLILVCVFFAEMVVVHFQTLDPHPF
TATVQTLGWREGVIPSYLDQDDIRAPLLRGSRSMQRRDETTDKESAARES
VGIPVESGIQKEFEESTGSAYDGLRVAVVIPYIGGQLPAWFDSFAELAAA
SSDFVDWIIFCAEDLANISTPPNVVMVPMSPTELAWQLSGIVYPPDADQK
PEMYPAHMPNNNSSPVEAGDLGRG
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mRNA from alignment at D-mesarthrocarpus_Contig9569:2326..4353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9569.2.1 ID=mRNA_D-mesarthrocarpus_Contig9569.2.1|Name=mRNA_D-mesarthrocarpus_Contig9569.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2028bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9569:2326..4353+ (Discosporangium mesarthrocarpum MT17_79)
CGGGGAGATCCGTTTCGGTGGCAATATCCCCGAAGCTCGAAACTTGACTC
TGGGACGGGTGAGGGAAACACAATGGTTCGAATACCCCACTATGGTATGT
CAGTGGAATAGGTGGGATTTGAGAAAGTTTCTTGCATTGTTGCTGTGAGA
AGGAGAGGTCCCCAAATTCGGCTGAGAAGGAGACACGGTGGACAAAGCAT
TGTCAAGCCCACAGGGCAGTTCGAGCTGTGAGGTTGGATGAGGAGGGTTG
CGCATCATGACGAGGTTCAGAATAAAATCTGCGACTATATCTCGTGCTTC
CCCACCGAAGCTCGTTGTCCTCCTGCTGCTGTTGCTGATTCTGGTTTGTG
TGTTCTTCGCCGAGATGGTTGTGGTACATTTTCAGACACTAGATCCGCAC
CCCTTCACAGCAACTGTACAAACATTGGGCTGGAGGGAGGGAGTTATCCC
TTCCTATCTTGACCAAGATGATATCAGAGCACCCCTTTTGCGTGGGTCGA
GGTCGATGCAACGGCGAGACGAGACAACCGACAAGGAAAGTGCCGCGAGA
GAAAGTGTGGGAATCCCCGTGGAGTCAGGAATACAAAAGGAGTTCGAGGA
GTCTACGGGGTCGGCCTACGATGGACTAAGGGTAGCTGTTGTGATCCCTT
ATATCGGGGGCCAACTTCCTGCTTGGTTTGATTCCTTTGCGGAGCTAGCG
GCAGCGAGCTCGGACTTCGTTGACTGGATAATATTCTGTGCAGAGGTGTG
TACAGTAGTATGCTGTCGATCATAATGGGCCACTTATCGTTCACTAGAGA
TGTCGATACCCACGGGCCGCAAATTGCTTGAAAGGAGTCTTTTTTGCTCT
CAGTTGTGGATTTAAACATTTTGATCCCAGTAGTTCAAAGTTTTGGCTCA
CACCCAAGCAAAAATAATCCCTTCTATACGACACGCTACACCTGATACGA
AAAATTGACCTGTTGCCTTACCAAGGTGGCGATGTTCCTGTTTTTCATAA
ATGCCAGCAACTGATGGTGTGCAAGGTTGAGTTCCTAGACACCCTTGAGC
TTTGTTAGGAAATTGGTTCAATGAAGAAGAGGTCAAACCTAACCCAGCCC
CTGGCCTGTTGGTGACATCCCTGGGATATCTCGTCTACAGTACTGACTTG
ACTCTCAATGTGACTCCGTGGTGTTGCCAAGTCAGACTGGTTCAAGCCTG
AGGATATGATTACAGTCTAGATCATGCACAATGAACTCCCTAGTAGATGG
TGAAAATGCAACAAGCTGGTTCCGTACATACCAGTCCAACCCATTTCCAA
CCCATTGTGTAGGAGGGGCAAGGTTGAGGTTATTTGATTGATCAGGTATC
AAATCTGGCTCTTTGGGTGTTAAATCCTGCCTTGACCCTTGTTGGAAACC
AGTATTGGTGTACTTGTACTTGGAGTATTGGTGCCACGTTTGTACACCTT
TTCATGGGGTACACTGTCCTGTCTTTTGTTACAATAATAAGGGCTTAGGT
GTTTCATCCAATGCAGAAGGGGATCGGTGGGAAGCACTTGAGTGTTGACA
ATTGAGATTTGAGTGTTGTCGTACCCGCCTGTCTCCTGCCCCACGTCAAT
GGAGTGTTACCATCCTCTCCACGGAGCAATTCTCACCCCTTGTACTCACT
CATCAATTTTCCTCTGTTGCACCCTTAGCACACATCCATCACTTTTCCTC
CCCTTGTACTCCCCCCCATATGGCCCTGCCACACACATCCATCACTTTTC
CTCCCCTTGTACTCCCCCCCGTATGGCCCTGCCACACACACCCATCACTT
TTCCTCCCCTTGTACTCCCCCCCGTATGGCCCTGCCACATGGTAGGACCT
GGCGAATATATCTACACCGCCAAATGTTGTGATGGTCCCAATGTCCCCCA
CCGAGTTAGCCTGGCAACTCTCGGGCATTGTGTATCCTCCAGATGCTGAC
CAGAAACCGGAGATGTACCCAGCACACATGCCTAACAACAACTCTAGCCC
TGTCGAAGCTGGGGACTTGGGGAGGGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9569:2326..4353+

>mRNA_D-mesarthrocarpus_Contig9569.2.1 ID=mRNA_D-mesarthrocarpus_Contig9569.2.1|Name=mRNA_D-mesarthrocarpus_Contig9569.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=672bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9569:2326..4353+ (Discosporangium mesarthrocarpum MT17_79)
ATGACGAGGTTCAGAATAAAATCTGCGACTATATCTCGTGCTTCCCCACC
GAAGCTCGTTGTCCTCCTGCTGCTGTTGCTGATTCTGGTTTGTGTGTTCT
TCGCCGAGATGGTTGTGGTACATTTTCAGACACTAGATCCGCACCCCTTC
ACAGCAACTGTACAAACATTGGGCTGGAGGGAGGGAGTTATCCCTTCCTA
TCTTGACCAAGATGATATCAGAGCACCCCTTTTGCGTGGGTCGAGGTCGA
TGCAACGGCGAGACGAGACAACCGACAAGGAAAGTGCCGCGAGAGAAAGT
GTGGGAATCCCCGTGGAGTCAGGAATACAAAAGGAGTTCGAGGAGTCTAC
GGGGTCGGCCTACGATGGACTAAGGGTAGCTGTTGTGATCCCTTATATCG
GGGGCCAACTTCCTGCTTGGTTTGATTCCTTTGCGGAGCTAGCGGCAGCG
AGCTCGGACTTCGTTGACTGGATAATATTCTGTGCAGAGGACCTGGCGAA
TATATCTACACCGCCAAATGTTGTGATGGTCCCAATGTCCCCCACCGAGT
TAGCCTGGCAACTCTCGGGCATTGTGTATCCTCCAGATGCTGACCAGAAA
CCGGAGATGTACCCAGCACACATGCCTAACAACAACTCTAGCCCTGTCGA
AGCTGGGGACTTGGGGAGGGGC
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