mRNA_D-mesarthrocarpus_Contig9544.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9544.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9544.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9544.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9544contigD-mesarthrocarpus_Contig9544:2683..3903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size580
Hectar predicted targeting categoryother localisation
Exons3
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791108.7388778-CDS-D-mesarthrocarpus_Contig9544:2682..29801680791108.7388778-CDS-D-mesarthrocarpus_Contig9544:2682..2980Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9544 2683..2980 -
1680791108.754278-CDS-D-mesarthrocarpus_Contig9544:3347..34881680791108.754278-CDS-D-mesarthrocarpus_Contig9544:3347..3488Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9544 3348..3488 -
1680791108.767245-CDS-D-mesarthrocarpus_Contig9544:3763..39031680791108.767245-CDS-D-mesarthrocarpus_Contig9544:3763..3903Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9544 3764..3903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9544.2.1prot_D-mesarthrocarpus_Contig9544.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9544 2683..3903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9544.2.1

>prot_D-mesarthrocarpus_Contig9544.2.1 ID=prot_D-mesarthrocarpus_Contig9544.2.1|Name=mRNA_D-mesarthrocarpus_Contig9544.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=193bp
MNEQAQLPLLHWSQRVQAVISGWELEGGIDGVEDGTQSFLQSMRSARLLS
RSAPTLPFQSERIDPCPLSSQSTPKMASGGDSFKRRAPQWPSSTNAVNLL
SGSPSSTKAHGGGQHEHNLSKADGQWNIGASGTHLSGGSRPINKGDFGRS
HKGRVERNTLMDPWLRKKECERRLKKNNAFINRTISGSSTTLT
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mRNA from alignment at D-mesarthrocarpus_Contig9544:2683..3903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9544.2.1 ID=mRNA_D-mesarthrocarpus_Contig9544.2.1|Name=mRNA_D-mesarthrocarpus_Contig9544.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1221bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9544:2683..3903- (Discosporangium mesarthrocarpum MT17_79)
ATGAACGAACAGGCTCAACTGCCTCTTCTACACTGGAGCCAGAGGGTACA
GGCGGTTATTTCGGGCTGGGAGTTGGAGGGGGGAATCGATGGAGTTGAAG
ATGGCACTCAGTCCTTTCTCCAGTCGATGCGGTCAGCCAGGTGGATATCA
GTCTCTCTTTGTTTCGAGTATGTCTTTCAAAATAAGATACTCTCCTGGGG
CACATCTCCTGCAACACGTACAGCTCCATGTGCCCATCGTTTACTGATAC
ATGAAAATGTCCCTCTGGAGCGTGAACATCCACTAATAATAGGGACTTGG
GTCACATGCTATTCAGCGAAAGCACCCCCAACCTCTGGTCTCTTCATGGC
CTCCAGCCCTCGTTCTTCTTGATGAGAAACCTGCCCTCACACAAGCACCG
TGTGTTTTTACTCAGGTTGCTGTCGAGGAGTGCACCGACCTTACCTTTTC
AGAGTGAGAGGATTGATCCCTGTCCACTATCTTCCCAGTCGACTCCAAAG
ATGGCCTCGGGTGGTGACAGTTTCAAGAGAAGAGCTCCACAATGGCCCTC
CTCAACGTGAGACATAAAATAAAAACGAAAACAAAAGTGGCCCTCAAACA
ACGATTCACCCCTGCAGAAGTACAATAATATTGTTAGCTCAGTTGTTGAT
GTCCTGTAGAGCTGTGTCATGTCATGGCAAGGTTCTTAGGAGTAACCGCT
TTGTCTCTCTCTGCCAGCAGCCATGTTCTTTGCTCCTTGTGTCCCTGAAG
CAGGCACTCACTATGTAACTCCAGGGATGAACAATCCCATGCATGGTGCA
CAAATCAGCATCCCACAGAGTGTAGACGATTTCTTAAGTAAATCTTGCAA
AATACTGAATCCAGTTCTACCCTGGTGACTTTTTAAAATCAACGTCTTTT
CATCCCCCCTTGCTCCCTCCAAGGAATGCGGTGAATTTGCTTTCTGGCTC
GCCCTCCTCTACCAAGGCACACGGTGGGGGTCAGCATGAGCATAATCTCT
CTAAGGCGGATGGTCAATGGAACATTGGAGCTTCAGGCACTCATCTGAGT
GGTGGTAGTAGGCCCATAAACAAGGGGGATTTTGGCCGGAGCCACAAGGG
TAGAGTTGAGAGAAATACGTTGATGGATCCATGGCTCAGAAAGAAGGAGT
GTGAGAGGCGTTTGAAGAAGAACAATGCCTTTATCAATAGGACAATTTCT
GGAAGTAGTACTACTCTCACG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9544:2683..3903-

>mRNA_D-mesarthrocarpus_Contig9544.2.1 ID=mRNA_D-mesarthrocarpus_Contig9544.2.1|Name=mRNA_D-mesarthrocarpus_Contig9544.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=579bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9544:2683..3903- (Discosporangium mesarthrocarpum MT17_79)
ATGAACGAACAGGCTCAACTGCCTCTTCTACACTGGAGCCAGAGGGTACA
GGCGGTTATTTCGGGCTGGGAGTTGGAGGGGGGAATCGATGGAGTTGAAG
ATGGCACTCAGTCCTTTCTCCAGTCGATGCGGTCAGCCAGGTTGCTGTCG
AGGAGTGCACCGACCTTACCTTTTCAGAGTGAGAGGATTGATCCCTGTCC
ACTATCTTCCCAGTCGACTCCAAAGATGGCCTCGGGTGGTGACAGTTTCA
AGAGAAGAGCTCCACAATGGCCCTCCTCAACGAATGCGGTGAATTTGCTT
TCTGGCTCGCCCTCCTCTACCAAGGCACACGGTGGGGGTCAGCATGAGCA
TAATCTCTCTAAGGCGGATGGTCAATGGAACATTGGAGCTTCAGGCACTC
ATCTGAGTGGTGGTAGTAGGCCCATAAACAAGGGGGATTTTGGCCGGAGC
CACAAGGGTAGAGTTGAGAGAAATACGTTGATGGATCCATGGCTCAGAAA
GAAGGAGTGTGAGAGGCGTTTGAAGAAGAACAATGCCTTTATCAATAGGA
CAATTTCTGGAAGTAGTACTACTCTCACG
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