mRNA_D-mesarthrocarpus_Contig9515.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9515.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9515.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 9.670e-44
Identity = 80/88 (90.91%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    7 NRCFLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQ 270
             RCFL+NLALLRL+QAWRAALQLDER YWLALSNKAMEVLDVQMA++VYRQLGDAGMVMGLERIA+VEDKNLLAGHVALLFG+YQTAQ
Sbjct:  718 ERCFLENLALLRLKQAWRAALQLDERRYWLALSNKAMEVLDVQMAVHVYRQLGDAGMVMGLERIAYVEDKNLLAGHVALLFGNYQTAQ 805          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: F0YFC0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFC0_AURAN)

HSP 1 Score: 130 bits (327), Expect = 4.350e-33
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQ 270
            F QNLALLRL+ AW AAL L  R YWLALS KAME++D+ +AI VYRQLGDAGMVMGLERIAH+EDKNLLAGHV LLF +Y  AQ
Sbjct:  674 FCQNLALLRLKDAWNAALALKNRAYWLALSGKAMEIMDIDLAIRVYRQLGDAGMVMGLERIAHLEDKNLLAGHVLLLFSNYNAAQ 758          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: A0A7S3JVG1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVG1_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.080e-33
Identity = 64/85 (75.29%), Postives = 72/85 (84.71%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQ 270
            F QNLALL+L  AW AAL+L+ R YWLALSNKAME++ VQ+AI VYRQLGDAGMV GLER+AH EDKNLLAGHV LLFG+Y  AQ
Sbjct:  483 FSQNLALLKLNDAWNAALELNARAYWLALSNKAMELIQVQLAIRVYRQLGDAGMVTGLERVAHHEDKNLLAGHVLLLFGNYNAAQ 567          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: A0A7S2CHC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHC0_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.740e-32
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQ 270
            F Q LALL+L++AW AAL LD R YWLALSNKAMEV+D+ MAI VYR+LGDAGMVMGLERI H EDKNLLAGH+ALL+  Y  AQ
Sbjct:  698 FTQKLALLQLKEAWNAALVLDGRAYWLALSNKAMEVMDINMAIRVYRELGDAGMVMGLERIMHYEDKNLLAGHIALLYDDYNKAQ 782          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: A0A7S4A1K5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1K5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.170e-30
Identity = 61/85 (71.76%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQ 270
            F QNLALLRL+ AW AA+ +++RPYWLALS KAM+VLDV MAI VYRQLGDAGMV+GLERI   ED NLLAGH+ LLF  Y  AQ
Sbjct:  686 FCQNLALLRLKDAWNAAIDINKRPYWLALSGKAMDVLDVNMAIRVYRQLGDAGMVLGLERIKPFEDTNLLAGHILLLFQDYDAAQ 770          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: A0A1W0A7H3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7H3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.400e-29
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQASEVN 285
            F QNL+LLR+  AW+ AL +D R YWLAL+++AM  LD+ ++  VYRQLGDAGMV+GL+RI HVEDKNLLAGHV++LFG Y  AQ   +N
Sbjct:  673 FKQNLSLLRMSNAWKTALSIDMREYWLALASRAMHTLDINLSKRVYRQLGDAGMVLGLDRIEHVEDKNLLAGHVSMLFGQYDQAQKLYLN 762          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: A0A1V9ZP03_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZP03_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.680e-28
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQASEVN 285
            F Q LAL RLQ AW+AAL +D R YW AL+++AM  LD+  +  VYRQLGDAGMV+GL+RI HVEDKNLLAGHV++LFG Y  AQ   +N
Sbjct:  675 FKQTLALCRLQHAWKAALAVDAREYWSALASRAMHTLDIAFSKRVYRQLGDAGMVLGLDRIEHVEDKNLLAGHVSMLFGQYDMAQKLFLN 764          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: A0A6G0XL25_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XL25_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.130e-28
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQASEVN 285
            F Q L+LLR++ AW+ A+ LD R YWLAL+ +AM  LD+ ++  VYRQLGDAGMVMGL RI HVEDKNLLAGHV++LFG Y+ AQ   +N
Sbjct:  670 FKQCLSLLRMEAAWKQAIVLDAREYWLALAGRAMHTLDIALSKRVYRQLGDAGMVMGLNRIEHVEDKNLLAGHVSMLFGQYEQAQKLFLN 759          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: A0A485KW28_9STRA (Aste57867_12461 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW28_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.840e-28
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQASEVNGA 291
            F Q L+LLR+  AW+ A+ +D R YWLAL+ +AM  LD+ ++  VYRQLGDAGMVMGL RI HVEDKNLLAGHV++LFG Y  AQ   +N +
Sbjct:  681 FKQCLSLLRMDMAWKQAIAIDAREYWLALAGRAMHTLDIALSKRVYRQLGDAGMVMGLNRIEHVEDKNLLAGHVSMLFGQYDQAQKLYLNSS 772          
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Match: A0A7S2W386_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W386_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.960e-28
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   16 FLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINVYRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQ 270
            F QNL+L +L+ AW AAL L+ R +W ALSNKAME++DV MAI VYRQLGDAGMVM LE+I+ VEDKNLLAGH+ALL+  Y  AQ
Sbjct:  628 FTQNLSLHKLRAAWDAALDLNGRAFWYALSNKAMELMDVAMAIRVYRQLGDAGMVMALEQISGVEDKNLLAGHIALLYDDYNKAQ 712          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9515.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK0_ECTSI9.670e-4490.91WD repeat membrane protein n=1 Tax=Ectocarpus sili... [more]
F0YFC0_AURAN4.350e-3375.29Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3JVG1_9STRA8.080e-3375.29Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2CHC0_9STRA2.740e-3274.12Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4A1K5_9STRA1.170e-3071.76Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A1W0A7H3_9STRA1.400e-2962.22Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZP03_9STRA1.680e-2863.33Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0XL25_9STRA3.130e-2862.22Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KW28_9STRA5.840e-2859.78Aste57867_12461 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2W386_9STRA7.960e-2868.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9515contigD-mesarthrocarpus_Contig9515:1316..2408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FIK0
Preferred nameFAP66
PFAMsANAPC4_WD40,Coatomer_WDAD,WD40_3
Model size300
Max annot lvl2759|Eukaryota
KEGG koko:K19671
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.59e-44
EggNOG OGsKOG2247@1|root,KOG2247@2759|Eukaryota
Descriptionmyotome development
Cds size300
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791106.6285498-CDS-D-mesarthrocarpus_Contig9515:1315..15041680791106.6285498-CDS-D-mesarthrocarpus_Contig9515:1315..1504Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9515 1316..1504 -
1680791106.6401062-CDS-D-mesarthrocarpus_Contig9515:2297..24081680791106.6401062-CDS-D-mesarthrocarpus_Contig9515:2297..2408Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9515 2298..2408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9515.2.1prot_D-mesarthrocarpus_Contig9515.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9515 1316..2408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9515.2.1

>prot_D-mesarthrocarpus_Contig9515.2.1 ID=prot_D-mesarthrocarpus_Contig9515.2.1|Name=mRNA_D-mesarthrocarpus_Contig9515.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=100bp
VRNRCFLQNLALLRLQQAWRAALQLDERPYWLALSNKAMEVLDVQMAINV
YRQLGDAGMVMGLERIAHVEDKNLLAGHVALLFGSYQTAQASEVNGAWF*
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mRNA from alignment at D-mesarthrocarpus_Contig9515:1316..2408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9515.2.1 ID=mRNA_D-mesarthrocarpus_Contig9515.2.1|Name=mRNA_D-mesarthrocarpus_Contig9515.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1093bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9515:1316..2408- (Discosporangium mesarthrocarpum MT17_79)
GTGAGAAACAGATGCTTCCTTCAGAACTTGGCCCTGCTCAGGTTGCAGCA GGCATGGCGCGCTGCTTTACAACTGGATGAGCGTCCCTACTGGCTGGCAC TGAGCAACAAGGTGGAGCGTTGGATATGCTGTAGTGCAGCGGTAGTATGG TTTGAGCTGCCAAAACTTCGTGCGGGAAAAGAGAGTCCCTTCACACGTCA GTCACCTCATTTGGGGATTTCCCCTAGGGTGGGGATACAGAAAAGCGGCG TTTGCAGGGCCCTTCAAGTCAAGGGTTTTAATATCGTCATGAAACACATT TGAATGGGCTCTTCATTCTGGAATTCTGGAACCTCTTGTGTGTGCATCCA CACAGAAGTGTTGTGTTTGAAGTAGCCCCTGGGTAGAGTCTTACTGTAGG AACTGCAGAGTAAATCTAAACAGCAACTGGAAATACACTTGGTATGAAGT ATTTGTATCTTTTTTCTGTGTTTTAAAGTGTACATTACTCTTACTGTTTG TAGCGAGAGTTTGGGGACTCCTTCTCCTTACTGCTCTTTGAGTGCACCCA TGCTCTACAAGGATCTCGCTTAAGACACAGCGCTTATGGTCAGATGTCCA CAGACAGTGCTCGAACCATTGGAGGTACCCCATAGTAGTTCTCACTCCGA GTGATTGCTCAACATTAGTCATACTTCAGAGTGGACACCTTGGTGTATTT GGTGTGGTGAGCTTGAAGTTGTTTCAAGAGATATCGAACACCATCACCAA TACTCCCGCCCTTACCCCCTTCCCCTCCCCCCTTCTCCTCTCTCCCCTTC ATCCTGTGCTTTGTGACGTGCCACTCCGGCCGGATTTTTCTCTTTCCATC CTTTCCCCCCCCCGTTGTTCTTTCTTTCCCCCCCCCTTCCTCCTTCCTCC CCAGGCAATGGAAGTGCTCGATGTCCAGATGGCAATCAACGTGTACCGAC AGCTGGGTGACGCCGGCATGGTGATGGGGCTGGAGCGCATTGCTCATGTG GAGGACAAGAACCTGCTCGCAGGGCACGTTGCTCTGCTCTTTGGCAGCTA TCAGACAGCACAGGCTAGTGAAGTGAATGGGGCATGGTTTTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9515:1316..2408-

>mRNA_D-mesarthrocarpus_Contig9515.2.1 ID=mRNA_D-mesarthrocarpus_Contig9515.2.1|Name=mRNA_D-mesarthrocarpus_Contig9515.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=300bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9515:1316..2408- (Discosporangium mesarthrocarpum MT17_79)
GTGAGAAACAGATGCTTCCTTCAGAACTTGGCCCTGCTCAGGTTGCAGCA
GGCATGGCGCGCTGCTTTACAACTGGATGAGCGTCCCTACTGGCTGGCAC
TGAGCAACAAGGCAATGGAAGTGCTCGATGTCCAGATGGCAATCAACGTG
TACCGACAGCTGGGTGACGCCGGCATGGTGATGGGGCTGGAGCGCATTGC
TCATGTGGAGGACAAGAACCTGCTCGCAGGGCACGTTGCTCTGCTCTTTG
GCAGCTATCAGACAGCACAGGCTAGTGAAGTGAATGGGGCATGGTTTTAG
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