mRNA_D-mesarthrocarpus_Contig9513.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9513.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9513.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A6H5KID0_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.950e-26
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:   10 QAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGDK 192
            +AEVGDDVLGEDPT+++LEAE AE+LGKEAALFVPSGTMANL+CHL WCS RGSEM+VGD+
Sbjct:  117 KAEVGDDVLGEDPTVQRLEAETAEVLGKEAALFVPSGTMANLICHLIWCSNRGSEMIVGDQ 177
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A836CDC2_9STRA (Pyridoxal phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.610e-22
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   10 QAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGDK 192
            +AEVGDDV GEDPT+ K E EVA LLGKEAALFVP+GTMANL+  L WC +RG+EM+VGD+
Sbjct:   34 KAEVGDDVFGEDPTINKFEKEVAALLGKEAALFVPTGTMANLIAELVWCDRRGAEMIVGDR 94
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A7R9BHC7_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BHC7_9CRUS)

HSP 1 Score: 88.6 bits (218), Expect = 8.740e-20
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   10 QAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGDK 192
            +AEVGDDV G+DPT+KKLE +VAE+LG EA LFVPSGTM NL+  +T C  RGSE+++GDK
Sbjct:   23 EAEVGDDVFGDDPTIKKLERKVAEILGMEAGLFVPSGTMGNLLAVMTHCCSRGSEVILGDK 83
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A3D0D138_9CHLR (Threonine aldolase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D0D138_9CHLR)

HSP 1 Score: 87.8 bits (216), Expect = 9.680e-20
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 ACCQAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGDK 192
            A  +AEVGDDV GEDPT+ +LEA  AE+LGKEAALFVPSGTM NLVC LT C  RG E+++GD+
Sbjct:   21 AMAKAEVGDDVYGEDPTVNRLEALAAEMLGKEAALFVPSGTMGNLVCLLTHCG-RGDEVIMGDR 83
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A2G9GYR3_9LAMI (Low-specificity L-threonine aldolase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GYR3_9LAMI)

HSP 1 Score: 87.8 bits (216), Expect = 1.060e-19
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 ACCQAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGD 189
            A   AEV DDVLG DPT  +LE E+A ++GKEAALFVPSGTMANL+C LT C  RGSE+++GD
Sbjct:   23 AIASAEVDDDVLGNDPTAARLEKEMARIMGKEAALFVPSGTMANLICVLTHCQIRGSEVILGD 85
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A392Q9D3_9FABA (L-allo-threonine aldolase (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q9D3_9FABA)

HSP 1 Score: 84.0 bits (206), Expect = 1.070e-19
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 ACCQAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGD 189
            A   AEV DDVLG DPT  +LE E+A+++GKEAALFVPSGTM NL+C L  C  RGSE+++GD
Sbjct:   26 AMASAEVDDDVLGYDPTALRLETEMAKIMGKEAALFVPSGTMGNLICVLVHCDIRGSEVILGD 88
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A815DGU9_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815DGU9_ADIRI)

HSP 1 Score: 88.6 bits (218), Expect = 2.470e-19
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 ACCQAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGDK 192
            A  +AEVGDDV G+DPT+ KL+   A+LLGK+AALFVPSGTMANL+C L  CSQ GSEM++GD+
Sbjct:   24 AMFEAEVGDDVYGDDPTVLKLQDMAAKLLGKQAALFVPSGTMANLICVLNHCSQFGSEMILGDE 87
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A6A0H5J0_HYAAZ (Beta_elim_lyase domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H5J0_HYAAZ)

HSP 1 Score: 88.6 bits (218), Expect = 3.410e-19
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 ACCQAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGDK 192
            A  +A VGDDV GEDPT+K+LE ++A LLGKE+AL VPSGTMANL+C LT C  RGSE+++GD+
Sbjct:   33 AMFRAPVGDDVFGEDPTVKELEKKIASLLGKESALLVPSGTMANLICVLTHCWMRGSEVILGDQ 96
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A6P6VKT0_COFAR (probable low-specificity L-threonine aldolase 1 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6VKT0_COFAR)

HSP 1 Score: 84.0 bits (206), Expect = 4.260e-19
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 ACCQAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGD 189
            A   AEV DDVL  DPT ++LE E+A + GKEAALFVPSGTM NL+C LT C  RGSE+++GD
Sbjct:   23 AMANAEVDDDVLSHDPTARRLETEMARITGKEAALFVPSGTMGNLICVLTHCPIRGSEVILGD 85
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BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Match: A0A8B7NC86_HYAAZ (probable low-specificity L-threonine aldolase 2 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NC86_HYAAZ)

HSP 1 Score: 88.6 bits (218), Expect = 5.100e-19
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 ACCQAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLTWCSQRGSEMMVGDK 192
            A  +A VGDDV GEDPT+K+LE ++A LLGKE+AL VPSGTMANL+C LT C  RGSE+++GD+
Sbjct:  180 AMFRAPVGDDVFGEDPTVKELEKKIASLLGKESALLVPSGTMANLICVLTHCWMRGSEVILGDQ 243
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9513.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KID0_9PHAE1.950e-2681.97Beta_elim_lyase domain-containing protein n=2 Tax=... [more]
A0A836CDC2_9STRA5.610e-2272.13Pyridoxal phosphate-dependent transferase n=1 Tax=... [more]
A0A7R9BHC7_9CRUS8.740e-2067.21Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A3D0D138_9CHLR9.680e-2068.75Threonine aldolase (Fragment) n=1 Tax=Chloroflexi ... [more]
A0A2G9GYR3_9LAMI1.060e-1966.67Low-specificity L-threonine aldolase n=1 Tax=Handr... [more]
A0A392Q9D3_9FABA1.070e-1963.49L-allo-threonine aldolase (Fragment) n=1 Tax=Trifo... [more]
A0A815DGU9_ADIRI2.470e-1967.19Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A6A0H5J0_HYAAZ3.410e-1965.63Beta_elim_lyase domain-containing protein n=1 Tax=... [more]
A0A6P6VKT0_COFAR4.260e-1963.49probable low-specificity L-threonine aldolase 1 n=... [more]
A0A8B7NC86_HYAAZ5.100e-1965.63probable low-specificity L-threonine aldolase 2 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9513contigD-mesarthrocarpus_Contig9513:4508..4702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LF44
Preferred nameTHA1
PFAMsBeta_elim_lyase
Model size195
Max annot lvl2759|Eukaryota
KEGG rclassRC00312,RC00372
KEGG koko:K01620
KEGG ReactionR00751,R06171
KEGG Pathwayko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004793,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008732,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0019752,GO:0042133,GO:0042136,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
Exons1
Evalue1.26e-27
EggNOG OGsCOG2008@1|root,KOG1368@2759|Eukaryota
EC4.1.2.48
DescriptionL-allo-threonine aldolase activity
Cds size195
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791106.5518293-CDS-D-mesarthrocarpus_Contig9513:4507..47021680791106.5518293-CDS-D-mesarthrocarpus_Contig9513:4507..4702Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9513 4508..4702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9513.3.1prot_D-mesarthrocarpus_Contig9513.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9513 4508..4702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9513.3.1

>prot_D-mesarthrocarpus_Contig9513.3.1 ID=prot_D-mesarthrocarpus_Contig9513.3.1|Name=mRNA_D-mesarthrocarpus_Contig9513.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=65bp
ACCQAEVGDDVLGEDPTLKKLEAEVAELLGKEAALFVPSGTMANLVCHLT
WCSQRGSEMMVGDK*
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mRNA from alignment at D-mesarthrocarpus_Contig9513:4508..4702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9513.3.1 ID=mRNA_D-mesarthrocarpus_Contig9513.3.1|Name=mRNA_D-mesarthrocarpus_Contig9513.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9513:4508..4702+ (Discosporangium mesarthrocarpum MT17_79)
GCTTGCTGTCAGGCGGAGGTCGGGGATGACGTCCTCGGGGAGGACCCCAC
CCTCAAGAAGCTGGAGGCAGAGGTAGCGGAGTTGCTGGGGAAGGAGGCGG
CGCTGTTTGTCCCGTCTGGGACAATGGCGAACCTCGTCTGCCATCTCACC
TGGTGCTCCCAGAGAGGCTCTGAGATGATGGTCGGGGACAAGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9513:4508..4702+

>mRNA_D-mesarthrocarpus_Contig9513.3.1 ID=mRNA_D-mesarthrocarpus_Contig9513.3.1|Name=mRNA_D-mesarthrocarpus_Contig9513.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9513:4508..4702+ (Discosporangium mesarthrocarpum MT17_79)
GCTTGCTGTCAGGCGGAGGTCGGGGATGACGTCCTCGGGGAGGACCCCAC
CCTCAAGAAGCTGGAGGCAGAGGTAGCGGAGTTGCTGGGGAAGGAGGCGG
CGCTGTTTGTCCCGTCTGGGACAATGGCGAACCTCGTCTGCCATCTCACC
TGGTGCTCCCAGAGAGGCTCTGAGATGATGGTCGGGGACAAGTGA
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