mRNA_D-mesarthrocarpus_Contig9513.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9513.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9513.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: A0A6H5L2I6_9PHAE (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2I6_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.710e-57
Identity = 83/102 (81.37%), Postives = 95/102 (93.14%), Query Frame = 1
Query:    1 MNGIDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEELASNSRK 306
            MN IDYS+KYVDG FEYRHVILPKETA++LP++RLL E+EWR+LGVQQSRGWQHYA+H PEPHILLFRRPLGT+PVTG+VDPELEREAK+KYAEEL+   RK
Sbjct:    1 MNRIDYSEKYVDGSFEYRHVILPKETAKILPQSRLLTEDEWRHLGVQQSRGWQHYAVHTPEPHILLFRRPLGTNPVTGRVDPELEREAKEKYAEELSDGIRK 102          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: A0A7S3MEH0_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEH0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.880e-50
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEELASNSR 303
            I+YS+KY DG +EYRHVILPK++AR LPK R L E EWRN+GVQQSRGW+HYA H+PEPHILLFRRPLGTDPV+G+VDPELEREA++KY +ELA N R
Sbjct:    6 IEYSEKYQDGKYEYRHVILPKDSARNLPKNRTLTELEWRNIGVQQSRGWEHYACHKPEPHILLFRRPLGTDPVSGEVDPELEREAREKYQQELAVNQR 103          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: A0A7S2BWV6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWV6_9STRA)

HSP 1 Score: 162 bits (411), Expect = 6.680e-50
Identity = 77/99 (77.78%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEELASNSRK 306
            I+YS+KY D  FEYRHVILPKE A+ LPK RLL E+EWR +GVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVD ELER+AK  Y   LA N RK
Sbjct:   24 IEYSEKYTDDAFEYRHVILPKELAKNLPKARLLGEQEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDVELERDAKDAYNASLAVNQRK 122          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: W7T145_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T145_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.130e-49
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEEL 288
            I+YS+KY+D   EYRHVILPKE AR LPK RLL E EWR +GVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV+ ELEREAK+KYAE +
Sbjct:    5 IEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESM 97          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: A0A835YHQ2_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.540e-48
Identity = 76/99 (76.77%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEELASNSRK 306
            I+YSDKY D  +EYRHVILPKE AR LP TRLL EEEWR LGVQQSRGW HYAIHRPEPHILLF RPLGTDP++G+VDPE EREAK+ YAE L  N R+
Sbjct:    5 IEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHLLLNMRR 103          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: A0A7S1UE56_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE56_9STRA)

HSP 1 Score: 158 bits (399), Expect = 6.750e-48
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEELASN 297
            I+YS+KY D  FEYRHVILPKE A+ +PKTR+LAE+EWRNLGVQQSRGW+HYAIHRPEPHILLFRRPLGTDP TG+VD +L+REAK+ Y   L  N
Sbjct:   38 IEYSEKYNDEDFEYRHVILPKELAKSIPKTRILAEQEWRNLGVQQSRGWEHYAIHRPEPHILLFRRPLGTDPTTGRVDADLQREAKESYLRTLREN 133          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.230e-47
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEELASN 297
            I+YS+KY D  +EYRHVILPKE A+ LPK RLL+E+EWR +GVQQSRGW HYAIHRPEPHILLFRRPLGTDPVTGK+DP LEREAK  Y   L  N
Sbjct:   23 IEYSEKYQDDKYEYRHVILPKELAKNLPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNLELN 118          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 3.840e-47
Identity = 71/94 (75.53%), Postives = 83/94 (88.30%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEELA 291
            I+YS+KY D  FEYRHVILPK+ A+ LPK+R+L E+EWR LGVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKVDP LE+EAK+ Y +ELA
Sbjct:    5 IEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQELA 98          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: A0A7S0UH58_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UH58_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.870e-46
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKY 276
            I+YS+KY D L EYRHVILPKE A+ LPK+RLL+E EWR +GVQQSRGWQHYAIHRPEPHILLFRRPLGTDP +G+VDPE+ER+A+ +Y
Sbjct:   37 IEYSEKYADDLNEYRHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKARDEY 125          
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Match: A0A7S2VEK7_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEK7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.640e-45
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1
Query:   10 IDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKY 276
            I+YS+KY D + EYRHVILPKE A+ LPK+RLL E EWR +GVQQSRGWQHYAIHRPEPHILLFRRPLGTDP +G+VDPELER A+ +Y
Sbjct:   23 IEYSEKYADDVNEYRHVILPKELAKTLPKSRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPELERAARDEY 111          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9513.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2I6_9PHAE1.710e-5781.37Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S3MEH0_9STRA1.880e-5075.51Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S2BWV6_9STRA6.680e-5077.78Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
W7T145_9STRA3.130e-4980.65Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A835YHQ2_9STRA3.540e-4876.77Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S1UE56_9STRA6.750e-4875.00Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S2BBH9_9STRA3.230e-4775.00Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
D7G7T5_ECTSI3.840e-4775.53Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S0UH58_9STRA5.870e-4676.40Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S2VEK7_9STRA1.640e-4576.40Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9513contigD-mesarthrocarpus_Contig9513:943..2063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMM5
PFAMsCKS
Model size309
Max annot lvl2759|Eukaryota
KEGG koko:K02219
KEGG Pathwayko04111,ko05200,ko05222,map04111,map05200,map05222
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.52e-57
EggNOG OGsKOG3484@1|root,KOG3484@2759|Eukaryota
Ec32 ortholog descriptionCyclin-dependent kinase, regulatory subunit
Ec32 orthologEc-06_003970.1
Descriptioncyclin-dependent protein serine/threonine kinase activator activity
Cds size309
COG categoryD
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791106.4824307-CDS-D-mesarthrocarpus_Contig9513:942..10141680791106.4824307-CDS-D-mesarthrocarpus_Contig9513:942..1014Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9513 943..1014 -
1680791106.4934797-CDS-D-mesarthrocarpus_Contig9513:1332..13931680791106.4934797-CDS-D-mesarthrocarpus_Contig9513:1332..1393Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9513 1333..1393 -
1680791106.5070226-CDS-D-mesarthrocarpus_Contig9513:1616..17391680791106.5070226-CDS-D-mesarthrocarpus_Contig9513:1616..1739Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9513 1617..1739 -
1680791106.5216439-CDS-D-mesarthrocarpus_Contig9513:2010..20631680791106.5216439-CDS-D-mesarthrocarpus_Contig9513:2010..2063Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9513 2011..2063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9513.2.1prot_D-mesarthrocarpus_Contig9513.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9513 943..2063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9513.2.1

>prot_D-mesarthrocarpus_Contig9513.2.1 ID=prot_D-mesarthrocarpus_Contig9513.2.1|Name=mRNA_D-mesarthrocarpus_Contig9513.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=103bp
MNGIDYSDKYVDGLFEYRHVILPKETARVLPKTRLLAEEEWRNLGVQQSR
GWQHYAIHRPEPHILLFRRPLGTDPVTGKVDPELEREAKQKYAEELASNS
RK*
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mRNA from alignment at D-mesarthrocarpus_Contig9513:943..2063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9513.2.1 ID=mRNA_D-mesarthrocarpus_Contig9513.2.1|Name=mRNA_D-mesarthrocarpus_Contig9513.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1121bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9513:943..2063- (Discosporangium mesarthrocarpum MT17_79)
ATGAACGGTATCGATTACTCAGACAAATACGTGGACGGACTGTTCGAGTA CAGGTAAACAGGGTTCTTGGACTTGTCGCTGAACAGGGACCACGGTTCCT TGAGAGGGCTTTTTTGCTGCCATGTAGTGTCCTTCGTGGATCCTTGCCTT CCCAAGGCAGCTTTCCTTCCGAATGCAAATATCCCTCGCGAATTAAGTAG CTCAAAGTATTCCTGGAACCTCAGGGACAAGGTTTAAGACGGATCTCGAC AATGGCGGACCTCTATAACAGCTTCTCTTGTGTAAGGTGGAGTCTCATGT GTCGCGTCCTGCCGTCTCCATCAGGCACGTGATCCTGCCGAAGGAGACAG CTAGGGTCCTACCTAAGACTCGCCTCTTGGCTGAGGAAGAGTGGAGAAAT CTGGGGGTGCAGCAGAGCCGGGGCTGGCAGCACTATGCCATTCACAGGTA CGCCTTCTCTCTGGAGTCCAATGTGGTACATCTTCCCTTGAAGGTAAGTG AGACCAGCCTTCTTTGCAGCGCAGACACGCTCTTCCCTGTATCCCTAACC GTCCACGTGTGCGTCCAGTTCGGCGATATGAAGGCTTGACCAACCTGTTT GCCCTGTCTGTCTCCCATGCCTCCTCGTCTCCGCCATCACCTGTGCCATC ATCCTTCTGCGTGTCGGCAGGCCGGAACCGCATATCCTTCTCTTCCGGAG GCCGCTAGGAACAGATCCAGTCACCGGCAAGGTACGCATCTGATTGAGGC AACCGATCCCCATAACCTGGGAGTGATCCAATAGATTGAGCACCTGCCAC TTTTGGAAATATCCACAGTTCCTATCCCGAAAACCGCTCTCGTTTTGGTT GCTCCCAGCTGTGCTCCTCCTCTTTCCGTCCCGTTTTTTGTTTTTAGTCC CGTTTTCCCCTGACTTCCCTAAACCCTTTGGCTCGCTAAGACAGCAGCCT TCCCACCCACAGCCTCCAAAATGTTTTATCTGTAAAATGTTCGTGCCGTT CCCACGGCCACCTGTTACTCCAACGCTGTGCCGGTTGGTGCCCCGAAAGG TGGATCCGGAGCTGGAGAGGGAAGCGAAACAAAAGTACGCTGAGGAGCTT GCCTCCAACAGCCGCAAATAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9513:943..2063-

>mRNA_D-mesarthrocarpus_Contig9513.2.1 ID=mRNA_D-mesarthrocarpus_Contig9513.2.1|Name=mRNA_D-mesarthrocarpus_Contig9513.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=309bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9513:943..2063- (Discosporangium mesarthrocarpum MT17_79)
ATGAACGGTATCGATTACTCAGACAAATACGTGGACGGACTGTTCGAGTA
CAGGCACGTGATCCTGCCGAAGGAGACAGCTAGGGTCCTACCTAAGACTC
GCCTCTTGGCTGAGGAAGAGTGGAGAAATCTGGGGGTGCAGCAGAGCCGG
GGCTGGCAGCACTATGCCATTCACAGGCCGGAACCGCATATCCTTCTCTT
CCGGAGGCCGCTAGGAACAGATCCAGTCACCGGCAAGGTGGATCCGGAGC
TGGAGAGGGAAGCGAAACAAAAGTACGCTGAGGAGCTTGCCTCCAACAGC
CGCAAATAA
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