mRNA_D-mesarthrocarpus_Contig9512.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9512.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9512.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A2E5PFD8_9PROT (EamA domain-containing protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PFD8_9PROT)

HSP 1 Score: 188 bits (477), Expect = 8.070e-59
Identity = 84/104 (80.77%), Postives = 97/104 (93.27%), Query Frame = 1
Query:    1 NIGMLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLARKA 312
            N+ MLPLA +P L  WVTP++EQWPL+IG+G++SSIGGYCFTR+VS+ADARIVQPFQFSRMIFAT IGWIMFSELPD+WTWVGA VIFGASYYIVYREGLAR++
Sbjct:   80 NLMMLPLALVPALIFWVTPSIEQWPLVIGIGIVSSIGGYCFTRSVSAADARIVQPFQFSRMIFATAIGWIMFSELPDIWTWVGAGVIFGASYYIVYREGLARRS 183          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A2S6Q8V5_9PROT (Riboflavin transporter n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q8V5_9PROT)

HSP 1 Score: 187 bits (474), Expect = 5.420e-57
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 1
Query:    1 NIGMLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLARKA 312
            N+ MLPLA IP L  WVTPT+EQWPL+IG+GV+SS+GGYCFTR+VS+ADAR+VQPFQFSRMIFAT IGWIMFSELPD+WTWVGA VIF ASYYIVYREGLARKA
Sbjct:  184 NLLMLPLALIPALVFWVTPTLEQWPLVIGIGVVSSVGGYCFTRSVSAADARVVQPFQFSRMIFATAIGWIMFSELPDIWTWVGAGVIFCASYYIVYREGLARKA 287          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A2D8G2R3_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D8G2R3_9PROT)

HSP 1 Score: 185 bits (469), Expect = 3.260e-56
Identity = 83/104 (79.81%), Postives = 94/104 (90.38%), Query Frame = 1
Query:    1 NIGMLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLARKA 312
            N GMLPLA IP LF+WVTPT+ QWPL+IG G++SSIGGYCFTR+VS+ADARIVQPFQFSRMIFA  IGW MFSELPDLWTW+GAAVIF ASYY+V+REGL R+A
Sbjct:  184 NFGMLPLALIPTLFLWVTPTITQWPLVIGXGIVSSIGGYCFTRSVSAADARIVQPFQFSRMIFAAAIGWXMFSELPDLWTWIGAAVIFAASYYLVFREGLTRRA 287          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A2E6P415_9GAMM (Uncharacterized protein n=1 Tax=Acidiferrobacteraceae bacterium TaxID=2024893 RepID=A0A2E6P415_9GAMM)

HSP 1 Score: 176 bits (446), Expect = 7.950e-53
Identity = 78/107 (72.90%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    1 NIGMLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLARKAAAT 321
            N+ MLP A +P LF WVTPT+ QWPL+IG+ ++SSIGGYCFTR+VS+A+ARIVQPFQFSRMIFAT IGWIMFSELPD+WTW+GA VIF ASYYIVYREG  ++   T
Sbjct:  184 NMIMLPFALLPALFFWVTPTLSQWPLVIGIAIVSSIGGYCFTRSVSAAEARIVQPFQFSRMIFATAIGWIMFSELPDIWTWIGAGVIFAASYYIVYREGFGKRKQQT 290          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A2E7QZ97_9PROT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E7QZ97_9PROT)

HSP 1 Score: 145 bits (367), Expect = 7.510e-41
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 NIGMLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLARKA 312
            N+ MLPLA +P LFVWVTPT+ + P +IG  + S++GG CFT AV +ADAR+VQPFQF+RMIFA  IG+ MF ELPD WTWVGAAVIFGASYYIV RE   R +
Sbjct:  185 NLLMLPLALVPTLFVWVTPTLTEVPWVIGAALFSAVGGLCFTLAVGAADARVVQPFQFTRMIFAAVIGYWMFFELPDFWTWVGAAVIFGASYYIVLREAKERSS 288          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A2E5V3M3_9PROT (Uncharacterized protein n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E5V3M3_9PROT)

HSP 1 Score: 142 bits (357), Expect = 2.310e-39
Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 1
Query:    1 NIGMLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREG 297
            N+ MLPLA IP  FVWVTPT EQ P ++G    S+IGG CFT +V +ADAR+VQPFQF+RMIFA  IG++MF ELPD WTW+GAA+IF +SYYIV REG
Sbjct:  184 NLLMLPLALIPTFFVWVTPTTEQLPWVLGAAFFSAIGGLCFTLSVGAADARVVQPFQFTRMIFAALIGYLMFLELPDTWTWIGAAIIFISSYYIVLREG 282          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A6N7FIE1_9PROT (EamA family transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FIE1_9PROT)

HSP 1 Score: 114 bits (285), Expect = 1.380e-28
Identity = 43/77 (55.84%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   46 WVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASY 276
            WVTP++E WP I+ +G+ +++G  C TRA+  A+AR+VQPF F R++++ G+GW++FSELP++WTWVGAA+IFG+SY
Sbjct:  205 WVTPSLEHWPWILAIGISNTLGALCHTRALGQAEARVVQPFSFLRLVWSVGVGWMLFSELPEVWTWVGAAIIFGSSY 281          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A2E6QP41_9PROT (RNA polymerase subunit sigma-54 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QP41_9PROT)

HSP 1 Score: 110 bits (274), Expect = 6.380e-27
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   16 PLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLARKAAAT 321
            P++ IP LFVW TP+ EQ   +I +G+I+++   CF RA + ADA  V PF F R+ FA  +G+I F E+PDLWTW+GAAVI G+S YI  RE + R+ AA+
Sbjct:  199 PVSLIPALFVWETPSWEQLFWLILLGIIATLAHQCFARAFAGADATAVLPFDFIRLPFAAALGYIAFGEIPDLWTWIGAAVIVGSSVYIARRESVMRRRAAS 300          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: A0A2E7QZ94_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QZ94_9PROT)

HSP 1 Score: 109 bits (273), Expect = 7.040e-27
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 NIGMLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLAR 306
            N+ M+ +A IP+LF W  P  +    +I +GV ++ G +   RA+++ADARIV PF F RM F  G+G++MF +LP LWTWVGA VIFGA+YY++  E   R
Sbjct:  194 NLVMVVIALIPLLFSWRLPPTQTIGWVIALGVFTTAGQWALARAIATADARIVWPFDFLRMPFTVGVGYVMFGQLPGLWTWVGAVVIFGAAYYVIREEAAVR 295          
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Match: UPI00146C6D0C (DMT family transporter n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146C6D0C)

HSP 1 Score: 108 bits (271), Expect = 1.420e-26
Identity = 53/109 (48.62%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    1 NIGMLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIVQPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLARKAAATNR 327
             I ++P++ +P LFVW TPT+EQ   ++G+GV +++G   FTRA S ADA  V PF F R++FA  IG++ FS+ PD++ W+GAAVIF ++ YI YRE  AR A+   R
Sbjct:  173 QILIIPMSLVPALFVWQTPTLEQMYYVVGMGVCATLGHLMFTRAFSLADATYVMPFDFFRLVFAAVIGFMFFSQQPDMFVWIGAAVIFVSAVYIAYRE--ARTASERRR 279          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9512.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E5PFD8_9PROT8.070e-5980.77EamA domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2S6Q8V5_9PROT5.420e-5782.69Riboflavin transporter n=1 Tax=Alphaproteobacteria... [more]
A0A2D8G2R3_9PROT3.260e-5679.81Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A2E6P415_9GAMM7.950e-5372.90Uncharacterized protein n=1 Tax=Acidiferrobacterac... [more]
A0A2E7QZ97_9PROT7.510e-4166.35Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A2E5V3M3_9PROT2.310e-3966.67Uncharacterized protein n=3 Tax=Rhodospirillales T... [more]
A0A6N7FIE1_9PROT1.380e-2855.84EamA family transporter n=1 Tax=Alphaproteobacteri... [more]
A0A2E6QP41_9PROT6.380e-2750.98RNA polymerase subunit sigma-54 n=1 Tax=Rhodospiri... [more]
A0A2E7QZ94_9PROT7.040e-2748.04Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
UPI00146C6D0C1.420e-2648.62DMT family transporter n=1 Tax=Sneathiella chinens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9512contigD-mesarthrocarpus_Contig9512:1..342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog331869.BAL199_15443
PFAMsEamA
Model size342
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.19e-22
EggNOG OGsCOG0697@1|root,COG0697@2|Bacteria,1MX07@1224|Proteobacteria,2TQNT@28211|Alphaproteobacteria,4BRZ4@82117|unclassified Alphaproteobacteria
DescriptionEamA-like transporter family
Cds size333
COG categoryEG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791106.3394709-UTR-D-mesarthrocarpus_Contig9512:0..91680791106.3394709-UTR-D-mesarthrocarpus_Contig9512:0..9Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9512 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791106.354652-CDS-D-mesarthrocarpus_Contig9512:9..3421680791106.354652-CDS-D-mesarthrocarpus_Contig9512:9..342Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9512 10..342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9512.1.1prot_D-mesarthrocarpus_Contig9512.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9512 10..342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9512.1.1

>prot_D-mesarthrocarpus_Contig9512.1.1 ID=prot_D-mesarthrocarpus_Contig9512.1.1|Name=mRNA_D-mesarthrocarpus_Contig9512.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
MLPLAFIPMLFVWVTPTVEQWPLIIGVGVISSIGGYCFTRAVSSADARIV
QPFQFSRMIFATGIGWIMFSELPDLWTWVGAAVIFGASYYIVYREGLARK
AAATNRQNPG*
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mRNA from alignment at D-mesarthrocarpus_Contig9512:1..342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9512.1.1 ID=mRNA_D-mesarthrocarpus_Contig9512.1.1|Name=mRNA_D-mesarthrocarpus_Contig9512.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=342bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9512:1..342+ (Discosporangium mesarthrocarpum MT17_79)
AATATCGGCATGTTGCCCCTTGCCTTCATCCCCATGCTGTTTGTCTGGGT GACGCCGACCGTGGAACAATGGCCGCTGATCATCGGCGTCGGGGTGATCA GCAGCATTGGCGGCTATTGCTTTACCCGCGCGGTATCGTCGGCGGATGCG CGTATCGTGCAGCCTTTCCAGTTTTCCCGCATGATCTTCGCAACGGGTAT CGGCTGGATCATGTTCTCCGAGCTGCCCGACCTCTGGACCTGGGTCGGGG CGGCGGTGATTTTCGGCGCGTCATACTATATCGTTTACCGCGAGGGGCTG GCGCGAAAGGCCGCCGCGACGAACCGGCAGAACCCGGGCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9512:1..342+

>mRNA_D-mesarthrocarpus_Contig9512.1.1 ID=mRNA_D-mesarthrocarpus_Contig9512.1.1|Name=mRNA_D-mesarthrocarpus_Contig9512.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9512:1..342+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTGCCCCTTGCCTTCATCCCCATGCTGTTTGTCTGGGTGACGCCGAC
CGTGGAACAATGGCCGCTGATCATCGGCGTCGGGGTGATCAGCAGCATTG
GCGGCTATTGCTTTACCCGCGCGGTATCGTCGGCGGATGCGCGTATCGTG
CAGCCTTTCCAGTTTTCCCGCATGATCTTCGCAACGGGTATCGGCTGGAT
CATGTTCTCCGAGCTGCCCGACCTCTGGACCTGGGTCGGGGCGGCGGTGA
TTTTCGGCGCGTCATACTATATCGTTTACCGCGAGGGGCTGGCGCGAAAG
GCCGCCGCGACGAACCGGCAGAACCCGGGCTAG
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