mRNA_D-mesarthrocarpus_Contig9506.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9506.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9506.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9506.3.1 vs. uniprot
Match: W4H1M3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H1M3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.020e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 WVYVMRDGATIYMRPGEDIRNPPRA-QGKRFIVKIIFLGTVARLRKLFNG-VWFDAKIGIWPVIEKVKTKRSGKNSTGGAMEIK 246
            W Y+ ++    Y+ PGE  + P R  + KR+I K++FL  VAR R +    +W+D KIGIWP++E V+ +R+  N   G +E K
Sbjct:  175 WFYITKERRKFYLVPGE--KEPKRVCKSKRYITKVMFLCAVARPRYVHGAEMWWDGKIGIWPIVESVQAQRASVNRPAGTLETK 256          
BLAST of mRNA_D-mesarthrocarpus_Contig9506.3.1 vs. uniprot
Match: A0A225VUR9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VUR9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.590e-7
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 WVYVMRDGATIYMRPGEDIRNPPRA-QGKRFIVKIIFLGTVARLRKLFNG-VWFDAKIGIWPVIEKVKTKRSGKNSTGG 231
            W  + +  +  Y+   E++  P R+   +R+I K++F+  VAR R  F    +FD KIGIWP++E++K +++ KN   G
Sbjct:  141 WFNMCKASSRYYLSADEEL--PYRSCSNRRYIGKVMFIAAVARPRYDFRRKTYFDGKIGIWPIVERIKAQKASKNRPAG 217          
BLAST of mRNA_D-mesarthrocarpus_Contig9506.3.1 vs. uniprot
Match: W4GSS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GSS2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.730e-6
Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   34 YMRPGEDIRNPPR--AQGKRFIVKIIFLGTVARLRKLFNGV-WFDAKIGIWPVIEKVKTKRSGKNSTGGAMEIK 246
            Y+ P ED   PP    + K FI+K++FL TVAR R   +   WFD KIG W   ++V   R  +N+  G M +K
Sbjct:  136 YLAPDED---PPHLTVKSKTFIMKVMFLSTVARSRWDHDKCEWFDGKIGTWHFTDRVPALRGSRNTPAGTMVMK 206          
BLAST of mRNA_D-mesarthrocarpus_Contig9506.3.1 vs. uniprot
Match: A0A397BNC9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BNC9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.250e-6
Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = 1
Query:    1 WVYVMRDGATIYMRPGEDIRNPPRAQGKRFIVKIIFLGTVARLRK-LFNGVWFDAKIGIWPVIEKVKTKRSGKNSTGGAM 237
            W    +D   +Y+  G+ I     A+ K+FI K +FL  VAR R     GV FD KIG+WP+++ V   R+ +N   G +
Sbjct:  149 WFNADKDRRKVYLVKGQTIGRRV-AKSKKFIPKFMFLAAVARPRYGPEEGVSFDGKIGMWPIVKYVPAVRNSRNRPAGTL 227          
BLAST of mRNA_D-mesarthrocarpus_Contig9506.3.1 vs. uniprot
Match: W4GI93_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GI93_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.600e-6
Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = 1
Query:    1 WVYVMRDGATIYMRPGEDIRNPPRAQGKRFIVKIIFLGTVARLRK-LFNGVWFDAKIGIWPVIEKVKTKRSGKNSTGGAM 237
            W    +D   +Y+  G+ I     A+ K+FI K +FL  VAR R     GV FD KIG+WP+++ V   R+ +N   G +
Sbjct:  138 WFNADKDRRKVYLVKGQTIGRRV-AKSKKFIPKFMFLAAVARPRYGPEEGVSFDGKIGMWPIVKYVPAVRNSRNRPAGTL 216          
BLAST of mRNA_D-mesarthrocarpus_Contig9506.3.1 vs. uniprot
Match: W4G213_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G213_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.900e-5
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   31 IYMRPGEDIRNPPRA-QGKRFIVKIIFLGTVARLRKLFNG---VWFDAKIGIWPVIEKVKTKRSGKNSTGGAMEIK 246
            +Y+ PGE   +P R+ + KRFI K++ LGTVAR R   +G   V  + KIG+WP +  V   R+ +N   G M  K
Sbjct:   95 VYLVPGE--ASPRRSWKSKRFIPKVMLLGTVARPR--IDGDRSVVINGKIGMWPFVRLVPALRNSRNRPAGTMVTK 166          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9506.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
W4H1M3_9STRA6.020e-1239.29Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A225VUR9_9STRA8.590e-734.18Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
W4GSS2_9STRA3.730e-640.54Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397BNC9_9STRA5.250e-636.25Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GI93_9STRA5.600e-636.25Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4G213_9STRA4.900e-540.79Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9506contigD-mesarthrocarpus_Contig9506:4622..4867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog161934.XP_010696038.1
PFAMsHTH_Tnp_Tc3_2
Model size246
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.88e-10
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791105.401645-UTR-D-mesarthrocarpus_Contig9506:4621..46331680791105.401645-UTR-D-mesarthrocarpus_Contig9506:4621..4633Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9506 4622..4633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791105.41252-CDS-D-mesarthrocarpus_Contig9506:4633..48671680791105.41252-CDS-D-mesarthrocarpus_Contig9506:4633..4867Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9506 4634..4867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9506.3.1prot_D-mesarthrocarpus_Contig9506.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9506 4634..4867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9506.3.1

>prot_D-mesarthrocarpus_Contig9506.3.1 ID=prot_D-mesarthrocarpus_Contig9506.3.1|Name=mRNA_D-mesarthrocarpus_Contig9506.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=78bp
MRDGATIYMRPGEDIRNPPRAQGKRFIVKIIFLGTVARLRKLFNGVWFDA
KIGIWPVIEKVKTKRSGKNSTGGAMEIK
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mRNA from alignment at D-mesarthrocarpus_Contig9506:4622..4867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9506.3.1 ID=mRNA_D-mesarthrocarpus_Contig9506.3.1|Name=mRNA_D-mesarthrocarpus_Contig9506.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=246bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9506:4622..4867+ (Discosporangium mesarthrocarpum MT17_79)
TGGGTTTATGTGATGAGGGACGGGGCCACAATCTACATGCGACCTGGTGA GGACATCCGCAACCCCCCCAGGGCACAGGGCAAGCGGTTCATCGTCAAGA TCATATTTCTTGGGACTGTGGCTAGGCTCCGGAAGCTATTTAACGGTGTC TGGTTCGATGCCAAGATCGGCATCTGGCCGGTCATCGAGAAAGTGAAGAC AAAGCGCTCCGGCAAGAACTCTACTGGTGGTGCCATGGAAATCAAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9506:4622..4867+

>mRNA_D-mesarthrocarpus_Contig9506.3.1 ID=mRNA_D-mesarthrocarpus_Contig9506.3.1|Name=mRNA_D-mesarthrocarpus_Contig9506.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=234bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9506:4622..4867+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGGGACGGGGCCACAATCTACATGCGACCTGGTGAGGACATCCGCAA
CCCCCCCAGGGCACAGGGCAAGCGGTTCATCGTCAAGATCATATTTCTTG
GGACTGTGGCTAGGCTCCGGAAGCTATTTAACGGTGTCTGGTTCGATGCC
AAGATCGGCATCTGGCCGGTCATCGAGAAAGTGAAGACAAAGCGCTCCGG
CAAGAACTCTACTGGTGGTGCCATGGAAATCAAA
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