mRNA_D-mesarthrocarpus_Contig9476.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9476.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9476.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9476.2.1 vs. uniprot
Match: D7FK07_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK07_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.160e-60
Identity = 107/195 (54.87%), Postives = 137/195 (70.26%), Query Frame = 1 
Query:   52 EDAAAMTWAYARAALVLRTEALAKALKWVDSSLVVQVAFRAFRCRKAYKTLLERRNRATLLLQCTSRRKKAFAVAKGLREQRCSEWEQLWDEKANQFYYFHKT-------TMESLWEEPSAPYRPMVRDPHTARMIQAWPQLERENMEAREAEPGFCMRCKIERATRLCDQCVH--KDKAAWHGGLWHFCFACFA 609
            EDAA+ TWA+ARAALVLRTE ++ AL+WV ++  +QVAFR FRCR +Y+ LL RR RA  ++Q   RRK+A A A  LREQR S WEQLWD++  + Y+F K        T ES W+ P  P+RPM+RD  +  ++QAWPQLERE +EA  A PG+CM+CK E+ATR+CDQC    + K AW GG +H CF CFA
Sbjct: 3108 EDAASRTWAHARAALVLRTEGVSVALRWVSAAKAIQVAFRGFRCRSSYRALLARRRRAATMIQSAERRKRACATAADLREQRASPWEQLWDDENGRLYFFFKAYVPGAKDTGESYWDPPDEPFRPMIRDRLSGALVQAWPQLERELLEAVGAAPGYCMQCKTEKATRVCDQCTFGGRKKPAWGGGKYHLCFVCFA 3302
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BLAST of mRNA_D-mesarthrocarpus_Contig9476.2.1 vs. uniprot
Match: A0A7S2NUD7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUD7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.270e-18
Identity = 59/175 (33.71%), Postives = 90/175 (51.43%), Query Frame = 1 
Query:   82 ARAALVLRTEALAKALKWVDSSLVVQVAFRAFRCRKAYKTLLERRNRATLLLQCTSRRKKAFAVAKGLREQRCSEWEQLWDEKANQFYYFHKTTMESLWEEPSAPYRPMVRDPHTARMIQAWPQLERENMEAREAEPGFCMRCKIERATRLCDQCVHKDKAAWHGGLWHFCFACF 606
            A+ AL+LR +A    ++W  SS+++Q  FR  +   +Y  +   R  +   +QC  R   A    + L  Q+ S+WEQLWD++   FY++   + E+ WEEP+  YRPMV +  + ++IQAWP L +      + E   C +C  E ATR C        +A       FCF CF
Sbjct:  238 AKGALILREDACKAIIEWWASSILIQKTFRGHQQYLSYLEIRAHRYNSVATIQCFIRLGLAVQCKEDLLAQQQSQWEQLWDDEKELFYWYDTESGETTWEEPAV-YRPMVPERRSQKLIQAWPLLGKATRSQNKYEQ-MCAKCADEIATRACSCSECAANSASGRKSKPFCFICF 410
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BLAST of mRNA_D-mesarthrocarpus_Contig9476.2.1 vs. uniprot
Match: A0A482SRF5_9ARCH (WW domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRF5_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 1.220e-7
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:   82 ARAALVLRTEALAKALKWVDSSLVVQVAFRAFRCRKAYKTLLERRNRATLLLQCTSRRKKAFAVAKGLREQRCSEWEQLWDEKANQFYYFHKTTMESLWEEP-SAPYRPMVRDPHTARMIQAWPQL 456
            A+ A ++R +     L  + S+ VVQ   R F  RK +                      A+  A  LR Q  S WEQLWD + ++ YY++  T  S ++EP    YRP++R+ H+A ++QAWP L
Sbjct:   86 AKGAWMIRQDIFEYLLSLIASAKVVQRNVRTFILRKKFVIXXXXXXXXXXXXXXXXXXXLAYRKAGWLRRQLYSVWEQLWDNRYHRLYYYNIDTHYSQYDEPPDRVYRPLIREKHSAALMQAWPHL 211
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9476.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK07_ECTSI1.160e-6054.87Calmodulin-binding WW domain protein n=1 Tax=Ectoc... [more]
A0A7S2NUD7_9STRA1.270e-1833.71Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A482SRF5_9ARCH1.220e-732.54WW domain-containing protein n=1 Tax=archaeon TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9476contigD-mesarthrocarpus_Contig9476:995..2816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FK07
PFAMsIQ
Model size612
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.9e-61
EggNOG OGs28ZVB@1|root,2R6Q0@2759|Eukaryota
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791101.42252-CDS-D-mesarthrocarpus_Contig9476:995..11301680791101.42252-CDS-D-mesarthrocarpus_Contig9476:995..1130Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9476 996..1130 -
1680791101.4374368-CDS-D-mesarthrocarpus_Contig9476:1459..15761680791101.4374368-CDS-D-mesarthrocarpus_Contig9476:1459..1576Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9476 1460..1576 -
1680791101.4476013-CDS-D-mesarthrocarpus_Contig9476:1872..20701680791101.4476013-CDS-D-mesarthrocarpus_Contig9476:1872..2070Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9476 1873..2070 -
1680791101.4603639-CDS-D-mesarthrocarpus_Contig9476:2657..28161680791101.4603639-CDS-D-mesarthrocarpus_Contig9476:2657..2816Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9476 2658..2816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9476.2.1prot_D-mesarthrocarpus_Contig9476.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9476 996..2816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9476.2.1

>prot_D-mesarthrocarpus_Contig9476.2.1 ID=prot_D-mesarthrocarpus_Contig9476.2.1|Name=mRNA_D-mesarthrocarpus_Contig9476.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=203bp
HSEATSIAASTLVSSSSEDAAAMTWAYARAALVLRTEALAKALKWVDSSL
VVQVAFRAFRCRKAYKTLLERRNRATLLLQCTSRRKKAFAVAKGLREQRC
SEWEQLWDEKANQFYYFHKTTMESLWEEPSAPYRPMVRDPHTARMIQAWP
QLERENMEAREAEPGFCMRCKIERATRLCDQCVHKDKAAWHGGLWHFCFA
CFA
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mRNA from alignment at D-mesarthrocarpus_Contig9476:995..2816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9476.2.1 ID=mRNA_D-mesarthrocarpus_Contig9476.2.1|Name=mRNA_D-mesarthrocarpus_Contig9476.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1822bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9476:995..2816- (Discosporangium mesarthrocarpum MT17_79)
CATTCAGAGGCTACCTCAATTGCAGCGTCAACTCTGGTATCCTCCTCATC
AGAGGATGCAGCAGCCATGACCTGGGCGTACGCCAGAGCCGCACTGGTGC
TTCGAACGGAGGCACTGGCGAAGGCGTTGAAGTGGGTGGACAGCAGCTTA
GTGGTTCAGGTGCAACAAATCCGATAGAAGTACGACATTTCCCCTGTGGG
AAACGTAACGTTGCAGAGGGAAATGCGCGTTTTTGCTCCTTCATAGGGTG
CGGAACCAAGGGGTCAAGAATTAGAAATTGAAACCCGGTTCCGAAATACT
TCGATTCCATCGTGCTGCAATAGGTTTAAGGCAGGTGCATCCTATAAAAT
ATTTCCAAGCATAAAGTACGAAATACGCGAAAGTACTTCGGGGCTCTATG
TTTTTGGATCTGTTTTGGCGTAGCTGTATGCAAGATATAGCGTAGGGCTA
AAGCAAATGAACGCCCTGGGGAAATCCGGCCATATCTTTCTTGTTGATTT
CCGTCGCTCCGGCAACGGTCTTCCCTCCACACTTAATACTAGTCTGGTCC
TTCAACTGTTGTTCGCGCGAATATCAATTTGTGTTTTGTTCTAAGGTTCA
GGTCAGGAATCGGAAAATAGAAAACACTTACTGGGTGTCAGCAAAGGTAT
ACTGCCGACCCAAGCAAAGATGAAAACAAAACGCTTGAATCACCCAGGAT
TTTCCCTCTTTCTACAGTTAGCTCTAACCTCGTGCCATCCTCACAGGTTG
CGTTTCGGGCCTTCCGGTGCCGCAAGGCATATAAAACACTTCTTGAGAGG
CGCAACCGTGCAACTCTCCTGCTGCAGTGTACTAGTCGTCGGAAGAAGGC
GTTTGCAGTGGCAAAAGGGTTGCGAGAGCAACGGTGCAGTGAGTGGGAGC
AACTGTGGGATGAGAAAGCCAATCAGTTCTATTACTTTCACAAGGTGAAA
GCAGCAAGACGGGATGAGGTTGATTTTGTCTAAGCCCTACTATCGAAATT
CCGAAGGACTTGTGTAACGTCTACCGTTATTGGATTGCCTACTAGGGTGT
TTCGAACTAAAACAGAATAGGATTAACTAGCGCTTCGTGCCCTGGGAAGC
CCTGATGTTGCAACTTCGACGTCCATTGGCACGACTCTGTAGAGAATTCT
ATTGGGACAAAAGAAAAGACCGGGCGACTGCCGACTTTGCCTGTAGTCCC
TATCCTCTTGTCATTTTAACCCTCTCCAACTTCACGCCAGACAACAATGG
AATCCCTGTGGGAGGAGCCTTCGGCACCCTACCGACCTATGGTTCGTGAT
CCCCATACCGCAAGGATGATCCAGGCCTGGCCACAGCTGGAAAGAGAGAA
TATGGAGGCAAGAGCAGTCAAGAAGACAACTTATCCATAGATAACAGTGA
CAAAAAACGTAGAGGTACTACTGTACGTCGAACTGTTCCAGAGTGCCTCG
AATTGCACAGTAGATAGTGCAAGCCCGTAAGTCCAAGCCGATACGAAACA
CCCCGAAGTACAGCTTTCCTTGGTCACCCCTCCCCCAACAAACGTCCCTT
CTGACCAAGTCCCTGCCACTGGTAACCTCTTCTCGCTCGTGTTGCTGCTG
ACCAGCGACAAACTGATCACTTCTACATGAATTTGTTCTCCTGCACAAAT
ACCTCCCGTCCCTTCGACCACCATTGCCATCCACAGGCTCGGGAGGCTGA
GCCCGGGTTTTGCATGCGCTGCAAGATTGAGCGCGCCACCAGACTCTGCG
ACCAGTGCGTGCACAAGGACAAGGCGGCCTGGCATGGGGGGCTGTGGCAC
TTTTGCTTTGCTTGCTTTGCTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9476:995..2816-

>mRNA_D-mesarthrocarpus_Contig9476.2.1 ID=mRNA_D-mesarthrocarpus_Contig9476.2.1|Name=mRNA_D-mesarthrocarpus_Contig9476.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=609bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9476:995..2816- (Discosporangium mesarthrocarpum MT17_79)
CATTCAGAGGCTACCTCAATTGCAGCGTCAACTCTGGTATCCTCCTCATC
AGAGGATGCAGCAGCCATGACCTGGGCGTACGCCAGAGCCGCACTGGTGC
TTCGAACGGAGGCACTGGCGAAGGCGTTGAAGTGGGTGGACAGCAGCTTA
GTGGTTCAGGTTGCGTTTCGGGCCTTCCGGTGCCGCAAGGCATATAAAAC
ACTTCTTGAGAGGCGCAACCGTGCAACTCTCCTGCTGCAGTGTACTAGTC
GTCGGAAGAAGGCGTTTGCAGTGGCAAAAGGGTTGCGAGAGCAACGGTGC
AGTGAGTGGGAGCAACTGTGGGATGAGAAAGCCAATCAGTTCTATTACTT
TCACAAGACAACAATGGAATCCCTGTGGGAGGAGCCTTCGGCACCCTACC
GACCTATGGTTCGTGATCCCCATACCGCAAGGATGATCCAGGCCTGGCCA
CAGCTGGAAAGAGAGAATATGGAGGCTCGGGAGGCTGAGCCCGGGTTTTG
CATGCGCTGCAAGATTGAGCGCGCCACCAGACTCTGCGACCAGTGCGTGC
ACAAGGACAAGGCGGCCTGGCATGGGGGGCTGTGGCACTTTTGCTTTGCT
TGCTTTGCT
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