mRNA_D-mesarthrocarpus_Contig9475.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9475.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9475.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Match: A0A6H5JFN4_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.020e-15
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    1 QIWVYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDTG 138
            Q WVYS TF++YAMSHFSRKCYTNVK+QL   A MS +LLSRLDTG
Sbjct:   22 QAWVYSATFISYAMSHFSRKCYTNVKKQLVVNAGMSKSLLSRLDTG 67          
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Match: A0A835YZT8_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZT8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.130e-10
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   10 VYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDTG 138
            VY  TFVAYAMSHFSRK YTNVK+Q+   A M+T L SR+DTG
Sbjct:   26 VYFMTFVAYAMSHFSRKSYTNVKKQMKTDAGMTTELFSRMDTG 68          
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Match: H6WBB5_VAULI (MFS domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB5_VAULI)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 QIWVYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDTG 138
            Q +VY  TF+AYAMSHF+RK YT VK+Q+   A  S  L SRLDTG
Sbjct:   29 QKFVYITTFIAYAMSHFARKSYTTVKKQMRMEADFSPELFSRLDTG 74          
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Match: A0A7S3LCY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCY3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-6
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    1 QIWVYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDT 135
            Q W +  TF  Y M+HFSRKCY+ VK+Q+ N A  S  LLS +DT
Sbjct:   53 QPWAFFITFGGYFMAHFSRKCYSTVKKQIQNDAGYSPLLLSEMDT 97          
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Match: A0A8J5XS52_DIALT (MFS domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XS52_DIALT)

HSP 1 Score: 50.1 bits (118), Expect = 8.940e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   10 VYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDT 135
            V+  TFV YAMSHFSRKCYTNVK  L  +A +   +LS++DT
Sbjct:   25 VFFITFVNYAMSHFSRKCYTNVKTDLV-KAGVDKMILSQMDT 65          
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Match: A0A7S1XRA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRA5_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.220e-5
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    7 WVYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDT 135
            WV+  TFV YAMSH++RKCYTNVK QL ++  ++T +L+ +D+
Sbjct:   13 WVFVATFVNYAMSHWTRKCYTNVKVQLMDQG-LTTYVLASMDS 54          
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Match: A0A7S0P0T3_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P0T3_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 1.670e-5
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   10 VYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDT 135
            V++ TFV YAMSHFSRKCYTNVK  L + + +   +LS++DT
Sbjct:   42 VFAITFVNYAMSHFSRKCYTNVKTDLVD-SGVDKVILSQMDT 82          
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Match: A0A7S0LK54_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LK54_9EUKA)

HSP 1 Score: 47.4 bits (111), Expect = 8.030e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   10 VYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDT 135
            V+  TF+ YAMSHFSRKCYTNVK  L   + +   +LS++DT
Sbjct:   38 VFLITFINYAMSHFSRKCYTNVKTDLVE-SGVDKVILSQMDT 78          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9475.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JFN4_9PHAE7.020e-1576.09MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YZT8_9STRA2.130e-1069.77Major facilitator superfamily domain-containing pr... [more]
H6WBB5_VAULI1.700e-860.87MFS domain-containing protein n=1 Tax=Vaucheria li... [more]
A0A7S3LCY3_9STRA1.870e-653.33Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A8J5XS52_DIALT8.940e-659.52MFS domain-containing protein n=1 Tax=Diacronema l... [more]
A0A7S1XRA5_9STRA1.220e-553.49Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0P0T3_9EUKA1.670e-557.14Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A7S0LK54_9EUKA8.030e-554.76Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9475contigD-mesarthrocarpus_Contig9475:4282..4422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr43611
PFAMsMFS_1
Model size141
Max annot lvl2836|Bacillariophyta
KEGG koko:K13783
KEGG TC2.A.1.4
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.72e-07
EggNOG OGsCOG0477@1|root,KOG2533@2759|Eukaryota,2XAF1@2836|Bacillariophyta
DescriptionMajor Facilitator Superfamily
Cds size141
COG categoryG
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791101.3521733-CDS-D-mesarthrocarpus_Contig9475:4281..44221680791101.3521733-CDS-D-mesarthrocarpus_Contig9475:4281..4422Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9475 4282..4422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9475.1.1prot_D-mesarthrocarpus_Contig9475.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9475 4282..4422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9475.1.1

>prot_D-mesarthrocarpus_Contig9475.1.1 ID=prot_D-mesarthrocarpus_Contig9475.1.1|Name=mRNA_D-mesarthrocarpus_Contig9475.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=47bp
QIWVYSCTFVAYAMSHFSRKCYTNVKRQLANRASMSTNLLSRLDTG*
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mRNA from alignment at D-mesarthrocarpus_Contig9475:4282..4422-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9475.1.1 ID=mRNA_D-mesarthrocarpus_Contig9475.1.1|Name=mRNA_D-mesarthrocarpus_Contig9475.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=141bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9475:4282..4422- (Discosporangium mesarthrocarpum MT17_79)
CAGATATGGGTGTATTCTTGCACGTTTGTAGCGTACGCCATGTCCCACTT CAGCCGCAAGTGCTACACCAACGTGAAGAGGCAACTGGCCAACAGAGCGA GCATGTCCACCAATCTTCTGAGCCGGCTTGACACTGGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9475:4282..4422-

>mRNA_D-mesarthrocarpus_Contig9475.1.1 ID=mRNA_D-mesarthrocarpus_Contig9475.1.1|Name=mRNA_D-mesarthrocarpus_Contig9475.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=141bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9475:4282..4422- (Discosporangium mesarthrocarpum MT17_79)
CAGATATGGGTGTATTCTTGCACGTTTGTAGCGTACGCCATGTCCCACTT
CAGCCGCAAGTGCTACACCAACGTGAAGAGGCAACTGGCCAACAGAGCGA
GCATGTCCACCAATCTTCTGAGCCGGCTTGACACTGGGTGA
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