mRNA_D-mesarthrocarpus_Contig946.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig946.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig946.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig946.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig946contigD-mesarthrocarpus_Contig946:2450..3835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size501
Hectar predicted targeting categoryother localisation
Exons3
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791099.6198227-CDS-D-mesarthrocarpus_Contig946:2449..26211680791099.6198227-CDS-D-mesarthrocarpus_Contig946:2449..2621Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig946 2450..2621 -
1680791099.6350148-CDS-D-mesarthrocarpus_Contig946:3121..32891680791099.6350148-CDS-D-mesarthrocarpus_Contig946:3121..3289Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig946 3122..3289 -
1680791099.6471238-CDS-D-mesarthrocarpus_Contig946:3674..38261680791099.6471238-CDS-D-mesarthrocarpus_Contig946:3674..3826Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig946 3675..3826 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791099.6606529-UTR-D-mesarthrocarpus_Contig946:3826..38351680791099.6606529-UTR-D-mesarthrocarpus_Contig946:3826..3835Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig946 3827..3835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig946.1.1prot_D-mesarthrocarpus_Contig946.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig946 2450..3826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig946.1.1

>prot_D-mesarthrocarpus_Contig946.1.1 ID=prot_D-mesarthrocarpus_Contig946.1.1|Name=mRNA_D-mesarthrocarpus_Contig946.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=164bp
MGSRLGSVGAGVQHVQGLAGVCQAWGWLSVDARAVILGLVVGLPVVILGL
RWKRGAARKTGLDGQGREEVHLRDLPVEYDGVERRTSRHTINFGEAANAT
APPHRRTSISERRPSMRRGSTRRTSVFDVLTGNIPPSAGEEGPGGLPATR
AEILGGEDRGSAGG
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mRNA from alignment at D-mesarthrocarpus_Contig946:2450..3835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig946.1.1 ID=mRNA_D-mesarthrocarpus_Contig946.1.1|Name=mRNA_D-mesarthrocarpus_Contig946.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1386bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig946:2450..3835- (Discosporangium mesarthrocarpum MT17_79)
TGGGGTCATATGGGATCGCGCTTAGGGAGCGTCGGCGCCGGGGTTCAGCA
CGTTCAAGGACTCGCGGGTGTATGTCAAGCATGGGGATGGCTGTCTGTTG
ATGCTCGGGCGGTGATCCTGGGACTCGTGGTTGGGCTTCCCGTAGTTATC
CTCGGGTTGAGGTTGGTCTCGTCGCCTGTCCCCCCTGGCCGCCACTTTTC
GAATCCTTTGTGGAGTTGAACCCTTTTTGAGGTTTGACTCCGAACACCAC
GGCAGAGTACTGCAAAGAAGAATTTGCCTCTGTGGTTCGGTGTCTCACGT
CCACGGCGCTTTTAGTGTCCTTCATTCGGTCAGGGTCACTGTGTGACAGA
CCGTCGGTACAGTCCTGCAGGTCGGGCAGCCGTTCTTGATGCACAGGCTC
AAGTTTTGAGCTCCCAATGGCTGCGATGCCTAAATTTCGAGTTGGTAACG
CTCCCCGTTGTGGACGGCCTACCCAGTAATCATTGAGATAATGCGGCCAA
ATGTAAGATTTGTCCCGAAACCGTGTCCCGTCTGCAAAAAACCTAGGTGG
AAGAGAGGAGCTGCAAGGAAGACAGGGTTAGACGGGCAAGGAAGGGAAGA
AGTGCATCTTCGAGACCTCCCTGTGGAGTACGATGGAGTAGAGCGGAGGA
CCAGCAGGCACACAATTAATTTCGGTGAAGCGGCTAACGCGACAGCCCCA
CCGCACCGGAGAACGTAAGTCCACCGTGACCTTACTTCCAAGACCAAGAA
GTGGGAGTACGGTTTACCTATGACATCCCCGATGCCTTCACCCCCTGAAA
ACTAGCTCCAGTGGTTTTCCAACTTTTCCTGCTATCCGATCTATCACCGC
CAAACCCAACGGCAGTTATCCAAACTTGACACGCCGTACCCCTTCCTCTA
CCCTGTGGTCAACTGCGCCCATTAGCGTCACTGCTGACCCCCTTTAGCCT
TGTTCCTCCCCTCCCGCTCTCTGGACAGTGGCAGAAAAACCTCCCCCCAA
AGCCTTGGCATTAGCCTGGTCTCAAATGCTACCAACCCACTACGCTAGAG
CCATACCCTCAAAGCAACAGACCACAGATTAACTCTCCCCTCACCCTAAC
CCTAAGCCCAGCTCTAGATTGACTGATAGGAGCAACATATACACCCGAGA
AGCCGATGAAAGCATTCCTCCCCCCCTCACCGCCCACCCGCATGGCAAAA
AACGAAAAAAATAGTTCAATCTCCGAGAGGCGACCAAGTATGAGGCGAGG
CAGCACAAGGCGCACCAGCGTCTTCGACGTCCTCACCGGGAACATACCCC
CCTCTGCGGGAGAGGAGGGGCCGGGGGGCCTGCCAGCCACCCGGGCCGAG
ATTCTCGGAGGTGAAGATCGTGGGTCAGCTGGGGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig946:2450..3835-

>mRNA_D-mesarthrocarpus_Contig946.1.1 ID=mRNA_D-mesarthrocarpus_Contig946.1.1|Name=mRNA_D-mesarthrocarpus_Contig946.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=492bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig946:2450..3835- (Discosporangium mesarthrocarpum MT17_79)
ATGGGATCGCGCTTAGGGAGCGTCGGCGCCGGGGTTCAGCACGTTCAAGG
ACTCGCGGGTGTATGTCAAGCATGGGGATGGCTGTCTGTTGATGCTCGGG
CGGTGATCCTGGGACTCGTGGTTGGGCTTCCCGTAGTTATCCTCGGGTTG
AGGTGGAAGAGAGGAGCTGCAAGGAAGACAGGGTTAGACGGGCAAGGAAG
GGAAGAAGTGCATCTTCGAGACCTCCCTGTGGAGTACGATGGAGTAGAGC
GGAGGACCAGCAGGCACACAATTAATTTCGGTGAAGCGGCTAACGCGACA
GCCCCACCGCACCGGAGAACTTCAATCTCCGAGAGGCGACCAAGTATGAG
GCGAGGCAGCACAAGGCGCACCAGCGTCTTCGACGTCCTCACCGGGAACA
TACCCCCCTCTGCGGGAGAGGAGGGGCCGGGGGGCCTGCCAGCCACCCGG
GCCGAGATTCTCGGAGGTGAAGATCGTGGGTCAGCTGGGGGC
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