mRNA_D-mesarthrocarpus_Contig9438.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9438.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9438.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: D7FUE3_ECTSI (UPF0250 protein NE1487 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUE3_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 8.010e-46
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 2
Query:  338 NGPSA-----WGRTSPST-RMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            +GPSA      G   P+T R MVLRPD ER+G+++GL        ERAFEYLV+YPCEFEIKVIG+NE +FA DIA TV  VC V  + VRF+VR T SGR+ S+TVHAPV NA MLYKCYE+ID+DPRVKFKF
Sbjct:   47 SGPSAAAARPTGSRPPTTARKMVLRPDWEREGRVYGLRMPRERTAERAFEYLVDYPCEFEIKVIGINEGSFADDIAATVSAVCEVETSDVRFTVRDTTSGRYQSITVHAPVKNATMLYKCYELIDEDPRVKFKF 180          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A836CJU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 9.910e-33
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 2
Query:  362 TSPSTRMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            +S     M+LR DA+R+G+  G          RAFEYLV+YPC+F+IK +G N+ N A D+A  VG+VC V    V ++VR T+SG++ SVT+ APVSN+DMLYKCYE+I QD RV+FKF
Sbjct:   38 SSRQALSMILRTDADREGRKMG--------NPRAFEYLVDYPCKFQIKAVGHNKGNLADDLAALVGSVCEVEPAAVEYTVRDTDSGKYRSVTLMAPVSNSDMLYKCYEVIGQDERVRFKF 149          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A836C812_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C812_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.960e-25
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 2
Query:  371 STRMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            + R M LR D +R+G+  G          R FEYLVEYPCEF+IKV+G N+ + A D+A  V   C V    V ++ R T SG++ SVT+ APV++  MLY+CY  I +D RVKFKF
Sbjct:   42 AARGMALRSDDDREGRKLG--------NPRVFEYLVEYPCEFQIKVVGFNDASLADDLAAIVAATCEVEVGAVTYTTRETESGKYSSVTLTAPVASPAMLYECYAKIGEDARVKFKF 150          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S1BKS9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKS9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.590e-22
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  371 STRMMVLRPDAERDGKIFGLG-GDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            S R++    + E D + F L   +   +K R FE LVEYPC F IK++G  E  F +D+ + V   C VG+T V +S R    G++ S+TV APV NA MLYK YE+I +DPRVKFKF
Sbjct:  180 SPRIVNDLNNLETDDQGFTLHTNEQTGEKARVFESLVEYPCTFPIKIVGAKEGQFVTDMVDLVAETCNVGRTDVTYSER--EKGKWTSITVQAPVENAQMLYKVYEVIGRDPRVKFKF 295          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: K0RVH1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RVH1_THAOC)

HSP 1 Score: 99.8 bits (247), Expect = 2.710e-21
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  386 VLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMN--EENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            +  P+ + +G       +   +K+R FE LVEYP  F+IK++G +  EE FA +I E V   CGV K+ V+ S R   +G++ SVTV APV NADMLY  YE IDQ+PRVKFKF
Sbjct:   84 IQNPEYDENGYTL-YADETTGEKKRVFEALVEYPSLFKIKIVGADDEEETFAPEIVELVAKSCGVDKSMVKNSKR--KNGKWTSVTVSAPVQNADMLYALYETIDQNPRVKFKF 194          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S2SR06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR06_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.550e-21
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 2
Query:  428 LGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            +   G A +   FE +++YPCEFEIKVIG  E  FA D+   +  V GV    + FS R T + +F SV++ A V  +DMLY+CYE +D+DPRVKFKF
Sbjct:   73 VNSGGEAPEGSVFERMLDYPCEFEIKVIGRLEGEFARDMVAIISTVTGVPAMDIAFSTRETPNNKFTSVSIKATVQTSDMLYQCYEELDKDPRVKFKF 170          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S1Z075_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z075_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.820e-20
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 2
Query:  365 SPSTRMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            +P     V  P+ +  G       +   +K+R FE LV+YPC+F +K++G NE  F  +I + V + C VG   V +S R  ++G++ SVTVHAPV +A+MLY  YE +D+DPRVKFKF
Sbjct:  135 APKYTNDVNNPEYDDQGYTLHTN-EVTGEKKRVFEALVDYPCDFTMKIVGRNEGAFVLEIVQVVADSCEVGIEDVPYSKR--DNGKWTSVTVHAPVKDAEMLYTLYENVDRDPRVKFKF 250          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A6U5NVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5NVB4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.080e-20
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  449 KKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            +K R F+ LVEYPC+F +K++G NE NFA ++   V +VC      V ++ R    G++ SVTV APV NA+MLY  YE +D+DPRVKFKF
Sbjct:   57 EKSRVFDALVEYPCKFTMKIVGANEGNFAQEMVSLVADVCEKEMEDVAYTTRAM--GKWTSVTVKAPVENAEMLYAIYEAVDKDPRVKFKF 145          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S2PJC1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJC1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.720e-19
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 2
Query:  386 VLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEE--NFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            V  P+ + +G       +   +K+R FE LVEYP  F++K++G ++E  +FA +I + V   CGV  + V+ S+R   +G++ SVTVHAPV +ADMLY  YE +D++PRVKFKF
Sbjct:  163 VQNPEYDENGYTL-YADETTGEKKRVFEALVEYPSVFKMKIVGQDDEKESFAPEIVDIVAKSCGVELSMVKHSLR--KNGKWTSVTVHAPVKSADMLYSLYENVDKNPRVKFKF 273          
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S2YU36_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YU36_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.410e-19
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  404 ERDGKIFGLGGDGVA-KKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
            E D + + L  D    +K R FE LV+YPC+F +K++G NE +F  ++   V   CGV   KV  SVR    G++ SVTV APV +A+MLY+ YE +D+DPRV+FKF
Sbjct:  274 EYDDQGYTLYTDNTTGEKSRVFEALVDYPCDFTLKIVGANEGSFVQEMVAVVAESCGVSAEKVPHSVRAL--GKWMSVTVQAPVESAEMLYQLYENVDRDPRVRFKF 378          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE3_ECTSI8.010e-4663.43UPF0250 protein NE1487 n=2 Tax=Ectocarpus TaxID=28... [more]
A0A836CJU5_9STRA9.910e-3352.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C812_9STRA2.960e-2547.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BKS9_9STRA4.590e-2246.61Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
K0RVH1_THAOC2.710e-2148.25Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2SR06_9STRA5.550e-2147.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1Z075_9STRA1.820e-2042.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U5NVB4_9STRA2.080e-2050.55Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2PJC1_9STRA2.720e-1943.86Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2YU36_9STRA3.410e-1946.73Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9438contigD-mesarthrocarpus_Contig9438:612..2485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUE3
PFAMsDUF493
Model size1050
Max annot lvl2759|Eukaryota
KEGG koko:K09158
Hectar predicted targeting categorysignal peptide
Exons3
Evalue3.85e-49
EggNOG OGs2E2JJ@1|root,2S9SY@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family UPF0250
Ec32 orthologEc-03_000560.1
DescriptionProtein of unknown function (DUF493)
Cds size498
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791097.8994815-UTR-D-mesarthrocarpus_Contig9438:611..9371680791097.8994815-UTR-D-mesarthrocarpus_Contig9438:611..937Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9438 612..937 -
1680791097.9574296-UTR-D-mesarthrocarpus_Contig9438:2259..24851680791097.9574296-UTR-D-mesarthrocarpus_Contig9438:2259..2485Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9438 2260..2485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791097.9190557-CDS-D-mesarthrocarpus_Contig9438:937..9641680791097.9190557-CDS-D-mesarthrocarpus_Contig9438:937..964Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9438 938..964 -
1680791097.9302192-CDS-D-mesarthrocarpus_Contig9438:1484..16101680791097.9302192-CDS-D-mesarthrocarpus_Contig9438:1484..1610Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9438 1485..1610 -
1680791097.9402962-CDS-D-mesarthrocarpus_Contig9438:1914..22591680791097.9402962-CDS-D-mesarthrocarpus_Contig9438:1914..2259Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9438 1915..2259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9438.1.1prot_D-mesarthrocarpus_Contig9438.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9438 938..2259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9438.1.1

>prot_D-mesarthrocarpus_Contig9438.1.1 ID=prot_D-mesarthrocarpus_Contig9438.1.1|Name=mRNA_D-mesarthrocarpus_Contig9438.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=166bp
MKPVTFAVPVLLGYPQALNALISKPRQLGTSHWGGSINGPSAWGRTSPST
RMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEE
NFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYK
CYEMIDQDPRVKFKF*
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mRNA from alignment at D-mesarthrocarpus_Contig9438:612..2485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9438.1.1 ID=mRNA_D-mesarthrocarpus_Contig9438.1.1|Name=mRNA_D-mesarthrocarpus_Contig9438.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1874bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9438:612..2485- (Discosporangium mesarthrocarpum MT17_79)
GTGGAAGGGGGTTCCGGGCTACTCAACTTCCTGACTTTCCAAGTCAAGGT TGGTTTGCAACCATGAACTTCAGATGGTAGAAAAATAATGCTCTGGGGCT TTAACAGGAAGACAAACCGGCTCTCTGTTTATCCTATTGCTTAACTGTGG GTCTGTGTTTTGAGGTGTTGGCCCTCCTTGAGGACCTCGTAAAGATTGGG TTGGGGCATTGGCACCTTTTGAAGAGATGAAACCCGTTACCTTTGCCGTT CCGGTGTTGCTGGGATACCCGCAAGCGTTGAACGCCCTCATTTCCAAACC GCGACAGCTGGGAACCTCGCACTGGGGTGGGTCAATTAATGGGCCTTCCG CGTGGGGAAGGACTTCTCCTTCAACAAGGATGATGGTACTTCGGCCCGAC GCGGAGAGGGATGGGAAGATTTTTGGACTGGGAGGAGATGGTGTCGCGAA GAAAGAACGTGCCTTCGAGTACCTTGTAGAGTACCCTTGTGAGTTCGAGA TCAAGGTTATCGGTATGAACGAGGAGAACTTCGCCTCGGACATCGCGGAG ACGGTCGGAAACGTATGCGGGGTGAGTGGCATTTCAGTCCCATGAATTCG GAAGTGGACAAGGAATTGCTATCCGCATGATCACCCAGGGTCGTTAGCTC ACGCTGAAGAATAAGGAGTATACAGAAAGTCAGGAGAAGGCGAGTGTGAG GCTCAGTACTCTTTTTCCCATTTTTTGATCACTTCCAGATGAAACGATCT CGCGAGCTTACCGTCCGCTCTACTTCCGACTACCGACCGGACGAGCATGA TAGAATAGACCGTACCTCATGCCCCAGTTGTTATTTCCCTCTATGACACC TTGCGCGACTCCCTTGCTTTGCCAGGTAGGCAAGACGAAAGTGCGCTTCT CTGTCCGCGGCACAAACAGCGGGCGGTTTTGTAGCGTGACCGTCCACGCG CCTGTCTCCAATGCTGATATGTTGTACAAGTGCTACGAGATGATCGATCA GGTTTGGTCCATAACTTTCCCTGTCACTAGGAGGGATAGCTGGGGGTGTT CTGTAGTTTTGAACGTACTTGCCTGGTGACGTGTTGAAAGAGTTGGAGGT TTATCAGATGGTGTCCCTTTTTTTGTGAGCGATTCCATGTGTGAGCGATT CCTCCACACAGTGTTCCGTGGATTCGTTTACAGACGGTGATAGGTCATGT TCTCTTATAAATGGGGGAGAAGAACATAGGACAGTCAAAGGGTGGTGGAA CTCCACAGCAGTCAATGATTCGCAATGAGAGACCTGGGGTATTCCTTTGC ACAACCCAAGCCATGAACATGTTCCCAGGAATCACCGAGTATTTATCAAA AAGGGAGCGTACGAAATGTAAGTTAATAGGTGTTTCTGGAGCAAGACACG AGGTTTAGCCTGTCTTTGGAATTACGGTTGCCTCACTTTACCTTCTGTTC CCCCATCATGCCCTCTCTCTTCTGGCTGCCCGATCTTTGTCTTGTAATTG GTCTGCTTTTCCTACTCCCAGGACCCACGTGTTAAGTTCAAATTTTAGGC ATACATGTTGGCCTTGAATCCCTCTTGTGCAAGAGGGGCCAGGGGAAAGC AGAGCTGGGAGACAAAACATTGCAGTTGACTGCCAAGGCTCAATATCCAG GATGAGGCTTTTGATGGCTTGGGGCGTGAGCAGGTGCCCACCTGCCTATC CCTCCAATCCCAGCTGGACCATAGCAGAGGTAAGGGAAGCCAATCGCTGT TGTCCAGTATTGGCCACGGTAAAATTCTATAGTAAAAGTTAAAAGTAAGA AAAAAAATTGAAATGGATGGTCGACTTCTGAGCTTCTGTTTTTCCCTGTT AATTTATGGGTGGAAAGCAGCAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9438:612..2485-

>mRNA_D-mesarthrocarpus_Contig9438.1.1 ID=mRNA_D-mesarthrocarpus_Contig9438.1.1|Name=mRNA_D-mesarthrocarpus_Contig9438.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=498bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9438:612..2485- (Discosporangium mesarthrocarpum MT17_79)
ATGAAACCCGTTACCTTTGCCGTTCCGGTGTTGCTGGGATACCCGCAAGC
GTTGAACGCCCTCATTTCCAAACCGCGACAGCTGGGAACCTCGCACTGGG
GTGGGTCAATTAATGGGCCTTCCGCGTGGGGAAGGACTTCTCCTTCAACA
AGGATGATGGTACTTCGGCCCGACGCGGAGAGGGATGGGAAGATTTTTGG
ACTGGGAGGAGATGGTGTCGCGAAGAAAGAACGTGCCTTCGAGTACCTTG
TAGAGTACCCTTGTGAGTTCGAGATCAAGGTTATCGGTATGAACGAGGAG
AACTTCGCCTCGGACATCGCGGAGACGGTCGGAAACGTATGCGGGGTAGG
CAAGACGAAAGTGCGCTTCTCTGTCCGCGGCACAAACAGCGGGCGGTTTT
GTAGCGTGACCGTCCACGCGCCTGTCTCCAATGCTGATATGTTGTACAAG
TGCTACGAGATGATCGATCAGGACCCACGTGTTAAGTTCAAATTTTAG
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