mRNA_D-mesarthrocarpus_Contig9438.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: D7FUE3_ECTSI (UPF0250 protein NE1487 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUE3_ECTSI) HSP 1 Score: 163 bits (413), Expect = 8.010e-46 Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 2
Query: 338 NGPSA-----WGRTSPST-RMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
+GPSA G P+T R MVLRPD ER+G+++GL ERAFEYLV+YPCEFEIKVIG+NE +FA DIA TV VC V + VRF+VR T SGR+ S+TVHAPV NA MLYKCYE+ID+DPRVKFKF
Sbjct: 47 SGPSAAAARPTGSRPPTTARKMVLRPDWEREGRVYGLRMPRERTAERAFEYLVDYPCEFEIKVIGINEGSFADDIAATVSAVCEVETSDVRFTVRDTTSGRYQSITVHAPVKNATMLYKCYELIDEDPRVKFKF 180
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A836CJU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU5_9STRA) HSP 1 Score: 128 bits (322), Expect = 9.910e-33 Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 2
Query: 362 TSPSTRMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
+S M+LR DA+R+G+ G RAFEYLV+YPC+F+IK +G N+ N A D+A VG+VC V V ++VR T+SG++ SVT+ APVSN+DMLYKCYE+I QD RV+FKF
Sbjct: 38 SSRQALSMILRTDADREGRKMG--------NPRAFEYLVDYPCKFQIKAVGHNKGNLADDLAALVGSVCEVEPAAVEYTVRDTDSGKYRSVTLMAPVSNSDMLYKCYEVIGQDERVRFKF 149
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A836C812_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C812_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.960e-25 Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 2
Query: 371 STRMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
+ R M LR D +R+G+ G R FEYLVEYPCEF+IKV+G N+ + A D+A V C V V ++ R T SG++ SVT+ APV++ MLY+CY I +D RVKFKF
Sbjct: 42 AARGMALRSDDDREGRKLG--------NPRVFEYLVEYPCEFQIKVVGFNDASLADDLAAIVAATCEVEVGAVTYTTRETESGKYSSVTLTAPVASPAMLYECYAKIGEDARVKFKF 150
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S1BKS9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKS9_9STRA) HSP 1 Score: 104 bits (259), Expect = 4.590e-22 Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 2
Query: 371 STRMMVLRPDAERDGKIFGLG-GDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
S R++ + E D + F L + +K R FE LVEYPC F IK++G E F +D+ + V C VG+T V +S R G++ S+TV APV NA MLYK YE+I +DPRVKFKF
Sbjct: 180 SPRIVNDLNNLETDDQGFTLHTNEQTGEKARVFESLVEYPCTFPIKIVGAKEGQFVTDMVDLVAETCNVGRTDVTYSER--EKGKWTSITVQAPVENAQMLYKVYEVIGRDPRVKFKF 295
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: K0RVH1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RVH1_THAOC) HSP 1 Score: 99.8 bits (247), Expect = 2.710e-21 Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 2
Query: 386 VLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMN--EENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
+ P+ + +G + +K+R FE LVEYP F+IK++G + EE FA +I E V CGV K+ V+ S R +G++ SVTV APV NADMLY YE IDQ+PRVKFKF
Sbjct: 84 IQNPEYDENGYTL-YADETTGEKKRVFEALVEYPSLFKIKIVGADDEEETFAPEIVELVAKSCGVDKSMVKNSKR--KNGKWTSVTVSAPVQNADMLYALYETIDQNPRVKFKF 194
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S2SR06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR06_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 5.550e-21 Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 2
Query: 428 LGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
+ G A + FE +++YPCEFEIKVIG E FA D+ + V GV + FS R T + +F SV++ A V +DMLY+CYE +D+DPRVKFKF
Sbjct: 73 VNSGGEAPEGSVFERMLDYPCEFEIKVIGRLEGEFARDMVAIISTVTGVPAMDIAFSTRETPNNKFTSVSIKATVQTSDMLYQCYEELDKDPRVKFKF 170
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S1Z075_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z075_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.820e-20 Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 2
Query: 365 SPSTRMMVLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
+P V P+ + G + +K+R FE LV+YPC+F +K++G NE F +I + V + C VG V +S R ++G++ SVTVHAPV +A+MLY YE +D+DPRVKFKF
Sbjct: 135 APKYTNDVNNPEYDDQGYTLHTN-EVTGEKKRVFEALVDYPCDFTMKIVGRNEGAFVLEIVQVVADSCEVGIEDVPYSKR--DNGKWTSVTVHAPVKDAEMLYTLYENVDRDPRVKFKF 250
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A6U5NVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5NVB4_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.080e-20 Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 2
Query: 449 KKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
+K R F+ LVEYPC+F +K++G NE NFA ++ V +VC V ++ R G++ SVTV APV NA+MLY YE +D+DPRVKFKF
Sbjct: 57 EKSRVFDALVEYPCKFTMKIVGANEGNFAQEMVSLVADVCEKEMEDVAYTTRAM--GKWTSVTVKAPVENAEMLYAIYEAVDKDPRVKFKF 145
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S2PJC1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJC1_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.720e-19 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 2
Query: 386 VLRPDAERDGKIFGLGGDGVAKKERAFEYLVEYPCEFEIKVIGMNEE--NFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
V P+ + +G + +K+R FE LVEYP F++K++G ++E +FA +I + V CGV + V+ S+R +G++ SVTVHAPV +ADMLY YE +D++PRVKFKF
Sbjct: 163 VQNPEYDENGYTL-YADETTGEKKRVFEALVEYPSVFKMKIVGQDDEKESFAPEIVDIVAKSCGVELSMVKHSLR--KNGKWTSVTVHAPVKSADMLYSLYENVDKNPRVKFKF 273
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Match: A0A7S2YU36_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YU36_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 3.410e-19 Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 2
Query: 404 ERDGKIFGLGGDGVA-KKERAFEYLVEYPCEFEIKVIGMNEENFASDIAETVGNVCGVGKTKVRFSVRGTNSGRFCSVTVHAPVSNADMLYKCYEMIDQDPRVKFKF 721
E D + + L D +K R FE LV+YPC+F +K++G NE +F ++ V CGV KV SVR G++ SVTV APV +A+MLY+ YE +D+DPRV+FKF
Sbjct: 274 EYDDQGYTLYTDNTTGEKSRVFEALVDYPCDFTLKIVGANEGSFVQEMVAVVAESCGVSAEKVPHSVRAL--GKWMSVTVQAPVESAEMLYQLYENVDRDPRVRFKF 378 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9438.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9438.1.1 >prot_D-mesarthrocarpus_Contig9438.1.1 ID=prot_D-mesarthrocarpus_Contig9438.1.1|Name=mRNA_D-mesarthrocarpus_Contig9438.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=166bp MKPVTFAVPVLLGYPQALNALISKPRQLGTSHWGGSINGPSAWGRTSPSTback to top mRNA from alignment at D-mesarthrocarpus_Contig9438:612..2485- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9438.1.1 ID=mRNA_D-mesarthrocarpus_Contig9438.1.1|Name=mRNA_D-mesarthrocarpus_Contig9438.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1874bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9438:612..2485- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9438:612..2485- >mRNA_D-mesarthrocarpus_Contig9438.1.1 ID=mRNA_D-mesarthrocarpus_Contig9438.1.1|Name=mRNA_D-mesarthrocarpus_Contig9438.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=498bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9438:612..2485- (Discosporangium mesarthrocarpum MT17_79)back to top |