mRNA_D-mesarthrocarpus_Contig9432.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9432.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9432.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: A0A6H5KXJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ8_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.860e-38
Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:   55 EGEGGEWEGVNLPEDNDDIDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKIMNAHKKEDEDTSGKRIASEAGRRYIMIPGAQRSVVGA 402
            EG G  WE V LPE N+DID EVIA+LPD +KKQVI AA+RRQR+RSR QYMPV+G+PAMYSQTQL+NFLRS +LNA+I+ A K++D D +GKRIASEAGRRYIM P      +GA
Sbjct:  291 EGRGVAWEEVELPERNEDIDPEVIASLPDHVKKQVIEAAKRRQRMRSRAQYMPVAGNPAMYSQTQLSNFLRSNQLNAQILKAQKQDDSDRTGKRIASEAGRRYIMTPAGASGRIGA 406
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: D7FZY4_ECTSI (DNA repair enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY4_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 4.600e-37
Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 1 
Query:   73 WEGVNLPEDNDDIDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKIMNAHKKEDEDTSGKRIASEAGRRYIMIPGAQRSVVGA 402
            WE V LPE N+DID EVIA+LPD +KKQVI AA+RRQR+RSR QYMPV+G+PAMYSQTQL+NFLRS +LNA+I+ A K++D D +GKRIASEAGRRYIM P       GA
Sbjct:  295 WEEVELPERNEDIDPEVIASLPDHVKKQVIEAAKRRQRMRSRAQYMPVAGNPAMYSQTQLSNFLRSNKLNAQILKAQKQDDSDRTGKRIASEAGRRYIMTPAGASGRSGA 404
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: A0A482SD95_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SD95_9ARCH)

HSP 1 Score: 88.6 bits (218), Expect = 1.490e-18
Identity = 42/94 (44.68%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   88 LPEDNDDIDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKIMNAHKKED--EDTSGKRIASEAGRRY 363
            LP++ DD D++V+A+LP  M+K +I  A+RR+R ++R  Y+P+S DP++YSQTQ+ANFL + RLN +++ A + ++  E   G++IA++ G+RY
Sbjct:   96 LPDNYDDFDVDVLASLPAHMRKSIIEDARRRERQKARSSYLPLSHDPSLYSQTQIANFLNASRLNRRLVQAQESQEGKEKDEGRKIAAQGGKRY 189
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: A0A7S3M1G1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1G1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.530e-17
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:   88 LPEDNDDIDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKIMNAHKKEDEDTSGKRIASEAGRRYIMI 372
            LPED  D+  + +AALP  ++K +I  A+RRQR++SR  Y+PV+G+PA+YSQTQL+NFL S +LN K ++AH+       G  IA+E  ++Y  I
Sbjct:  107 LPEDCGDLSADALAALPAHLRKSLIEEARRRQRMQSRAHYLPVAGNPALYSQTQLSNFLNSSKLNRKFIDAHQSTQSTLVGTSIAAEGKKKYQFI 201
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: A0A7S2U599_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U599_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.130e-12
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:   76 EGVNLP--EDNDD---IDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKIMNAHKKEDEDTS--------GKRIASEAGRRYIM 369
            EG N    ED DD   ID +   ++PD +KK+V+  A+R+QRLRSR ++MPV+  P  +SQ QL NFLRS  LN +I    K     +S        G+RIAS+A RR I 
Sbjct:  216 EGPNFEWKEDEDDFKSIDPDAWVSMPDNVKKEVVEGARRKQRLRSRKEFMPVAAQPEDFSQVQLQNFLRSSNLNKQIQGLAKTAATTSSSTSNPFLQGERIASDASRRIIF 326
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: W7TX36_9STRA (Dna repair enzyme n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX36_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.080e-12
Identity = 33/65 (50.77%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   97 DNDDIDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKI 291
            ++D++D+ V+A+LP  ++K V+ +A+RRQR+ SR  +MPV+G+PA+YSQ Q++NFL+S RLN K+
Sbjct:  249 EDDNVDVMVLASLPPELQKDVVESAKRRQRMLSRQAFMPVAGNPALYSQAQISNFLKSSRLNQKV 313
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: A0A4D9D712_9STRA (XPGI domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D712_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.640e-12
Identity = 33/65 (50.77%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   97 DNDDIDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKI 291
            ++D++D+ V+A+LP  ++K V+ +A+RRQR+ SR  +MPV+G+PA+YSQ Q++NFL+S RLN K+
Sbjct:  160 EDDNVDVMVLASLPPELQKDVVESAKRRQRMLSRQAFMPVAGNPALYSQAQISNFLKSSRLNQKV 224
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: A0A7R9YE34_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE34_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.540e-6
Identity = 29/72 (40.28%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   76 EGVNLPEDNDDIDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKI 291
            +GV +     D+D +++A LP  ++K++I AA R +R++SR +Y+ V+  P +YSQTQ++NFL+  +LN  I
Sbjct:  100 DGVLVLPKTGDMDPDMLANLPPLLRKEIIEAAHRERRVKSRQEYISVAERPLLYSQTQISNFLKHCKLNDNI 171
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BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Match: A0A7R9YE64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE64_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.120e-6
Identity = 29/72 (40.28%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   76 EGVNLPEDNDDIDMEVIAALPDRMKKQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKI 291
            +GV +     D+D +++A LP  ++K++I AA R +R++SR +Y+ V+  P +YSQTQ++NFL+  +LN  I
Sbjct:  258 DGVLVLPKTGDMDPDMLANLPPLLRKEIIEAAHRERRVKSRQEYISVAERPLLYSQTQISNFLKHCKLNDNI 329
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9432.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KXJ8_9PHAE3.860e-3868.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY4_ECTSI4.600e-3769.09DNA repair enzyme n=1 Tax=Ectocarpus siliculosus T... [more]
A0A482SD95_9ARCH1.490e-1844.68Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S3M1G1_9STRA1.530e-1747.37Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7S2U599_9STRA3.130e-1244.14Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
W7TX36_9STRA8.080e-1250.77Dna repair enzyme n=2 Tax=Nannochloropsis gaditana... [more]
A0A4D9D712_9STRA8.640e-1250.77XPGI domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7R9YE34_9STRA1.540e-640.28Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7R9YE64_9STRA3.120e-640.28Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9432contigD-mesarthrocarpus_Contig9432:891..3098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZY4
Preferred namegen-1
PFAMsXPG_I,XPG_N
Model size582
Max annot lvl2759|Eukaryota
KEGG koko:K10846
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0008821,GO:0009987,GO:0012501,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0023052,GO:0031570,GO:0033554,GO:0034641,GO:0035556,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051716,GO:0051726,GO:0061062,GO:0061064,GO:0065007,GO:0071704,GO:0072395,GO:0072401,GO:0072422,GO:0090304,GO:0090305,GO:0097190,GO:0097193,GO:0140097,GO:1901360,GO:2000026
Exons4
Evalue7.54e-38
EggNOG OGsCOG0258@1|root,KOG2520@2759|Eukaryota
Descriptionnucleotide-excision repair, DNA incision, 3'-to lesion
Cds size579
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791097.5752633-CDS-D-mesarthrocarpus_Contig9432:891..9891680791097.5752633-CDS-D-mesarthrocarpus_Contig9432:891..989Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9432 892..989 -
1680791097.586833-CDS-D-mesarthrocarpus_Contig9432:1506..16991680791097.586833-CDS-D-mesarthrocarpus_Contig9432:1506..1699Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9432 1507..1699 -
1680791097.6013181-CDS-D-mesarthrocarpus_Contig9432:2294..24621680791097.6013181-CDS-D-mesarthrocarpus_Contig9432:2294..2462Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9432 2295..2462 -
1680791097.611419-CDS-D-mesarthrocarpus_Contig9432:2978..30981680791097.611419-CDS-D-mesarthrocarpus_Contig9432:2978..3098Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9432 2979..3098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9432.2.1prot_D-mesarthrocarpus_Contig9432.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9432 892..3098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9432.2.1

>prot_D-mesarthrocarpus_Contig9432.2.1 ID=prot_D-mesarthrocarpus_Contig9432.2.1|Name=mRNA_D-mesarthrocarpus_Contig9432.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=193bp
EAGGGGDNWGSSSSSEWGEGEGGEWEGVNLPEDNDDIDMEVIAALPDRMK
KQVIAAAQRRQRLRSRHQYMPVSGDPAMYSQTQLANFLRSQRLNAKIMNA
HKKEDEDTSGKRIASEAGRRYIMIPGAQRSVVGAPWRRRGAQGNPGDGWG
RGSDAVIGHGDPSPKGGGETRRRRRVVDSDGDSDYLSDGMQQW
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mRNA from alignment at D-mesarthrocarpus_Contig9432:891..3098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9432.2.1 ID=mRNA_D-mesarthrocarpus_Contig9432.2.1|Name=mRNA_D-mesarthrocarpus_Contig9432.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2208bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9432:891..3098- (Discosporangium mesarthrocarpum MT17_79)
GAGGCAGGCGGTGGTGGGGATAACTGGGGATCAAGCTCATCTTCTGAGTG
GGGCGAGGGTGAGGGGGGGGAATGGGAAGGTGTCAACCTCCCGGAGGATA
ATGATGACATTGATATGGAGGCAAGCCTGTGCCAAGGGGATAGTGTATGG
AGGGGGGGGAGAGATCCGGTGTATACCTTGTTTGTGTTTATGTATTCCGG
TACAGTACATTGCTCTAGTACTCATACTTCATCTATATCACTCTAACTTC
AAGATCAGCTCTGTCATCGAGTGCTGTTATTAATTGCTTGGGTGCTGAAG
TCGGCAGTACTTTGAGATACCATGGCCCATGTGGTATACTGTTGCCGCAC
CGCATTCTTGGCAGAGAAGAGGACCTGCATTGATATCAATTTTCTTGATA
GTCAGTACTACGCTTAGGTAGAGAGAGGTCTTCGATCCCTTGTGTGCTGT
CCAGGGTATACCTTACTCATGAACTGAAGTTCAAGGCCGTTCGGTGCTTT
ACGAGGCAGGCACTGACGTAACGGGTTTTTAAATCCCCTCCTTCCCCCCT
CCCCCCCCCCCCCCCCCCCCGCCTTCCCGCCAACCTGCTGTTCCCCTCCC
CTCCCCTCCCCTCCCCTCCCCCCACTGCATGAGCAGGTGATAGCGGCCCT
GCCCGATCGCATGAAAAAACAGGTGATTGCTGCGGCCCAACGAAGACAGA
GGCTCCGGAGCCGCCACCAGTACATGCCTGTGTCGGGTGACCCCGCCATG
TACAGCCAGACCCAGCTGGCCAATTTCCTCCGCTCCCAGAGGCTCAATGC
CAAGGTGAGGACCCAGGGGGCTGAGGGTTAGGGGTCGGGGTTGGGGTTGG
GGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGTACGAAGCAGTAAT
AGTGGTGGTAGTAATACATCTGTAGGGTTAGGGTTAAGGTTGGGGTTAGT
ACGTGGTAATGGTAGTGGTTTAGTGGTAATACAGCTACAGGGTTAGGGTT
AGGGCTAGTATATAGTAGTAGTAATACATCTATAGGGTTAGGGTTAGGGT
TAGCATGAAGCAATAATAGTAGTAGTTATAGGGTTAGGGTTAGGGTTAGG
GTTAGGTTTGGGGTGAGGGTTACGGTGAGGGTTGCGGGCTAATGGTTAGC
GTTGGGGTTTGGGCAGAGGTGAAGGGTGACCATTAGTATTATGGTTGGGG
TGAAGATTAGGGCGAGGGTTTGGGTTAGTGTTGGGGTTAGCAGGGGGACG
ACGGATAGGGTTATGGGGTTATAGGGCCAAAACGAAAGAATAGGATGGGG
GGTGGAGGGGGGAGAAGAAGGGGGAGTTACTAGCTACTGTACTGTGCCAA
GGAGGACAAAGAAAGGCAACTTTGTCTCCCCCCCCAACGCCTCCCTCAGA
TTATGAACGCCCACAAGAAGGAAGATGAGGACACCTCGGGCAAGCGCATT
GCCTCTGAGGCCGGCCGCCGCTACATCATGATCCCAGGCGCCCAGCGTTC
CGTGGTGGGGGCTCCGTGGCGGAGGAGGGGCGCCCAGGGAAACCCAGGAG
ACGGTTGGGGGAGAGGCAGCGATGCCGTTATCGGCCACGGAGGTGGAAGC
ATGATGGGCGGGGGGGGGGGACATGCAGGGGAAGCAAGCGCGTGTTTTGT
TGTTTTGGAATCCTTGTTTAAGAGGCCTTGAGGTCTGCTACAGTGGGGCT
AAGCAGAGTGTCACCCAGTTTAGGGTTAGGGTTAGGGCTGGGGTAAGGGT
TACCAAGTTATGTTGTAGGGTATGCTGTGGCATCTTTCTTCTCTTTGTTC
TTGTTCTTGTTGAAACACAGCCCTGGAGCAGCTGCGTTGTGGCTCTTAGA
GTTAGGGTTCCAAGTGTAGATGACGATTGGTTGTCAATATATCTAGGGTG
CAAAAAATGCTGTCCAGGCCTAACTGCAACTCTGACCTCAACCCCAACCC
CAACCCCAACCCTAGCCCCACCCTAGCCCCAAGCCTTAACCTTCGAAAGT
CCACTCTAGCCCTGTCACCATCCATATCCCTAAACCCTACCCCAAACCCT
AACCCTAATCCCATCCTCCACCCCCCCTCCCCGTCCCCTCCCCGGGCCTG
CAACACCAGACCCTTCTCCCAAGGGTGGCGGTGAGACGCGGCGCCGGCGG
AGGGTTGTGGACAGCGATGGTGACAGTGATTACTTGTCTGATGGCATGCA
ACAGTGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9432:891..3098-

>mRNA_D-mesarthrocarpus_Contig9432.2.1 ID=mRNA_D-mesarthrocarpus_Contig9432.2.1|Name=mRNA_D-mesarthrocarpus_Contig9432.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=579bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9432:891..3098- (Discosporangium mesarthrocarpum MT17_79)
GAGGCAGGCGGTGGTGGGGATAACTGGGGATCAAGCTCATCTTCTGAGTG
GGGCGAGGGTGAGGGGGGGGAATGGGAAGGTGTCAACCTCCCGGAGGATA
ATGATGACATTGATATGGAGGTGATAGCGGCCCTGCCCGATCGCATGAAA
AAACAGGTGATTGCTGCGGCCCAACGAAGACAGAGGCTCCGGAGCCGCCA
CCAGTACATGCCTGTGTCGGGTGACCCCGCCATGTACAGCCAGACCCAGC
TGGCCAATTTCCTCCGCTCCCAGAGGCTCAATGCCAAGATTATGAACGCC
CACAAGAAGGAAGATGAGGACACCTCGGGCAAGCGCATTGCCTCTGAGGC
CGGCCGCCGCTACATCATGATCCCAGGCGCCCAGCGTTCCGTGGTGGGGG
CTCCGTGGCGGAGGAGGGGCGCCCAGGGAAACCCAGGAGACGGTTGGGGG
AGAGGCAGCGATGCCGTTATCGGCCACGGAGACCCTTCTCCCAAGGGTGG
CGGTGAGACGCGGCGCCGGCGGAGGGTTGTGGACAGCGATGGTGACAGTG
ATTACTTGTCTGATGGCATGCAACAGTGG
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